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Schistosoma mansoni
cluster # 10381 cluster # 10381       Sequences # 15       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10381#0 length = 1031 sequences # 6  
consensus_10381#1 length = 783 sequences # 7  
consensus_10381#2 length = 357 sequences # 1  
consensus_10381#3 length = 356 sequences # 1  

consensusID : consensus_10381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1031
fasta sequence
                              [TCCAGGCCAANAATTTGGCACGAGGAGCGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCACTGGAAAGCGTACTCCTTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCAGCTACAAATACTCCTTGGACTTTAGATTCCGCTATACGTCGTCGTTTTGAAAAGCGTATATATATTCCCCTTCCTGAAACAGGTGAACGTGTTAGTATGTTCAAAACGAATCTGGGAAACATATTTCATAGTCTGGTAGAGAAAGACTTTATTGAACTGGGGGCAAGAAGCACGGGTTATTCAGGTGCGGACATATCAGTTGTTGTTCGGGAAGCTTT-ATGATGCCT-GTTCGGAA-GTTCANACGTC-ACACACTTTAATATGTTACTGGTCCTCTNCTATGATCATCAAGATGTCATGATCTTTATGCATGCTCCCAGAGACATGTGCGATGAATGATNGAAAAAGCCNATGATACTTAAGACCCATGCTTCTGATTGTGATCATAACATAGCACGTATGCTAACTACACTGTATTACAGATGCGAGACTGATTTTTCAAAGTCTGCAACTGTAGATTACATTGTGCATTAATAATTTTTTAGCAACAATCTGACTATAGTTCCTTCCCGTANGACAATCTCTATCGTCTGGCCCATGAAAGACCCTTAA]

[+] EMBL CD080841             [TCCAGGCCAANAATTTGGCACGAGGAGCGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCACTGGAAAGCGTACTCCTTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCAGCTACAAATACTCCTTGGACTTTAGATTCCGCTATACGTCGTCGTTTTGAAAAGCGTATATATATTCCCCTTCCTGAAACAGGTGAACGTGTTAGTATGTTCAAAACGAATCTGGGAAACATATTTCATAGTCTGGTAGAGAAAGACTTTATTGAACTGGGGGCAAGAAGCACGGGTTATTCAGGTGCGGACATATCAGTTGTTGTTCGGGAAGCTNT ATGATGCCTNGTTCGGAA GTTCANACGTC ACACACTTTAATATGTTACTGGTCCTCTNCTATGATCATCAAGATGTCATGATCTTTATGCATGCTCCCAGAGACATGTGCGATGAATGATNGAAAAAGCCNATGATACTTAAGACCCATGCTTCTGATTGTGATCATAACATAGCACGTATGCTAACTACACTGTATTACAGATGCGAGACTGATTTTTCAAAGTCTGCAACTGTAGATTACATTGTGCATTAATAATTTTTTAGCAACAATCTGACTATAGTTCCTTCCCGTANGACAATCTCTATCGTCTGGCCCATGAAAGACCCTTAA]
[+] EMBL CD190528             [                                                                                                                                                                  TTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCAGCTACAAATACTCCTTGGACTTTAGATTCCGCTATACGTCGTCGTTTTGAAAAGCGTATATATATTCCCCTTCCTGANACAGGTGAACGTGTTAGTATGTTCAAAACGAATCTGGG AACATATTTCATAGTCTGGTAGAG AAGACTTTATTGA                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD184281             [                                                                                                                                                                  TTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCAGCTACAAATACTCCTTGGACTTTAGATTCCGCTATACGTCGTCGTTTTGAAAAGCGTATATATATTCCCCTTCCTG AACAGGTGAACGTGTTAGTATGTTCAAAACGAATCTGGGAAACATATTTCATAGTCTGGTAGAGAAAGACTTTATTG                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD178977             [                                                                                                                                                                                                                                                                                                                                                                         TGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCAGCTACAAATACTCCTTGGACTTTAGATTCCGCTATACGTCGTCGTTTTGAAAAGCGTATATATATTCCCCTTCCTGAAACAGGTGAACGTGTTAGTATGTTCAAAACGAATCTGGGAAACATATTTCATAGTCTGGTAGAGAAAGACTTTATTGAACTGGGGGCAAGAAGCACGGGTTATTCAGGTGCGGACATATCAGTTGTTGTTCGGGAAGCTTTAATGATGCCT GTTCGGAAGGTTCAAACGTCAACACACTTTAAata                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD202321             [                                                                                                                                                                                                                                                                                                                                                                                                                              TAAAAACTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCAGCTACAAATACTCCTTGGACTTTAGATTCCGCTATACGTCGTCGTTTTGAAAAGCGTATATATATTCCCCTTCCTGAAACAGGTGAACGTGTTAGTATGTTCAAAACGAATCTGGGAAACATATTTCATAGTCTGGTAGAGAAAGACTTTATTGAACTGGGGGCAAGAAGCACGGGTTATTCAGGTGCGGACATATCAGTTGTTGTTCGGGAAGCTTTAATGATGCCT GTTCGGAA G                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD164112             [                                                                                                                                                                                                                                                                                                                                                                                                                                    CTGAATTTCTAGTTCAAGTGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCAGCTACAAATACTCCTTGGACTTTAGATTCCGCTATACGTCGTCGTTTTGAAAAGCGTATATATATTCCCCTTCCTGAAACAGGTGAACGTGTTAGTATGTTCAAAACGAATCTGGGAAACATATTTCATAGTCTGGTAGAGAAAGACTTTATTGAACTGGGGGCAAGA                                                                                                                                                                                                                                                                                                                                                                                                 ]


>consensus_10381#0 TCCAGGCCAANAATTTGGCACGAGGAGCGACTGAAAAACCTAATATCAGTTGGGATGATG TCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGT TTCCACACCTGTTCACTGGAAAGCGTACTCCTTGGAGAGGGATTCTTCTTTACGGGCCAC CCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACAT TTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGG TGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTTTCATCGATGAAG TTGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAA CTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGG CAGCTACAAATACTCCTTGGACTTTAGATTCCGCTATACGTCGTCGTTTTGAAAAGCGTA TATATATTCCCCTTCCTGAAACAGGTGAACGTGTTAGTATGTTCAAAACGAATCTGGGAA ACATATTTCATAGTCTGGTAGAGAAAGACTTTATTGAACTGGGGGCAAGAAGCACGGGTT ATTCAGGTGCGGACATATCAGTTGTTGTTCGGGAAGCTTTATGATGCCTGTTCGGAAGTT CANACGTCACACACTTTAATATGTTACTGGTCCTCTNCTATGATCATCAAGATGTCATGA TCTTTATGCATGCTCCCAGAGACATGTGCGATGAATGATNGAAAAAGCCNATGATACTTA AGACCCATGCTTCTGATTGTGATCATAACATAGCACGTATGCTAACTACACTGTATTACA GATGCGAGACTGATTTTTCAAAGTCTGCAACTGTAGATTACATTGTGCATTAATAATTTT TTAGCAACAATCTGACTATAGTTCCTTCCCGTANGACAATCTCTATCGTCTGGCCCATGA AAGACCCTTAA



consensusID : consensus_10381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 783
fasta sequence
                              [TAGTTTCCCAAAGTCCTGGATGTCGCTTGAAAAAGGCATACAGTTAGTCACTCTCGCAACGAATGAAGACAAAGCAAAGAATTATGAGCAGGCGCTCAGATATTACGAACATGCAATTGAATATTTCATTCATGCCATCAAGTATGAGGCTCCAAGTGATCGAGCTAAAGAATCTATTCAGCTCAGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAAGTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTCTGATAAAGAAGACGGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCACTGGAAAGCGTACTCCTTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGANACCAAGTATAATTTTCATCGATGAAGNTGATTCGNTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGNTTCAAATGCA-GGTGTCTGTTC]

[+] EMBL AI976289             [TAGTTTCCCAAAGTCCTGGATGTCGCTTGAAAAAGGCATACAGTTAGTCACTCTCGCAACGAATGAAGACAAAGCAAAGAATTATGAGCAGGCGCTCAGATATTACGAACATGCAATTGAATATTTCATTCATGCCATCAAGTATGAGGCTCCAAGTGATCGAGCTAAAGAATCTATTCAGCTCAGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAAGTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTCTGATAAAGAAGACGGCGAANACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCT                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD097204             [                             AAAAAGGCATACAGTTAGTCACTCTCGCAACGAATGAAGACAAAGCAAAGAATTATGAGCAGGCGCTCAGATATTACGAACATGCAATTGAATATTTCATTCATGCCATCAAGTATGAGGCTCCAAGTGATCGAGCTAAAGAATCTATTCAGTTCAGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAAGTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTCTGATAAAGAAGACGGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCACTGGAA                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD097203             [                                        CAGTTAGTCACTCTCGCAACGAATGAAGACAAAGCAAAGAATTATGAGCAGGCGCTCAGATATTACGAACATGCAATTGAATATTTCATTCATGCCATCAAGTATGAGGCTCCAAGTGATCGAGCTAAAGAATCTATTCAGCTCAGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAAGTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTCTGATAAAGAAGACGGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCACTGGAA                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD153885             [                                                                                                                                              TATGAGGCTCCAAGTGATCGAGCTAAAGAATCTATTCAGCTCAGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAAGTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTCTGATAAAGAAGACGGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCACTGGAAAGCGTACTCCTTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGANACCAAGTATAATTTTCATCGATGAAGNTGATTCGNTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGNTTCAAATGCA GGTGTCTGTTC]
[+] EMBL CD154237             [                                                                                                                                              TATGAGGCTCCAAGTGATCGAGCTAAAGAATCTATTCAGCTCAGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAAGTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTCTGATAAAGAAGACGGCGAAAACTCACGTTCTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCACTGGAAAGCGTACTCCTTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGANAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTNTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACCAGACGGATAANAACTGAANTTCTAG TTCANATGCANGGTGTCTGTT ]
[-] EMBL CD184446             [                                                                                                                                                                                        AGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAAGTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTCTGATAAAGAAGACGGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCGCTGGAAAGCGTACTCC                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD188627             [                                                                                                                                                                                                                                                                                                                                                                    TGACTGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCCTCACCTGTTCACTGGAAAGCGTACTCCTTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTAT                                                                                                                                               ]


>consensus_10381#1 TAGTTTCCCAAAGTCCTGGATGTCGCTTGAAAAAGGCATACAGTTAGTCACTCTCGCAAC GAATGAAGACAAAGCAAAGAATTATGAGCAGGCGCTCAGATATTACGAACATGCAATTGA ATATTTCATTCATGCCATCAAGTATGAGGCTCCAAGTGATCGAGCTAAAGAATCTATTCA GCTCAGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAA GTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTC TGATAAAGAAGACGGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGAC TGAAAAACCTAATATCAGTTGGGATGATGTCATTGGCTTACAGTCAGCAAAGGAAGCTTT GAAGGAAGCAGTGATTCTACCTATAAAGTTTCCACACCTGTTCACTGGAAAGCGTACTCC TTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGC TGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAG TAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACA GANACCAAGTATAATTTTCATCGATGAAGNTGATTCGNTATGCGGGTCACGTAATGATAA TGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGNTTCAAATGCAGGTGTCTG TTC



consensusID : consensus_10381#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence
                              [GGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCCTTTGGCTTAAACTCAACAAAAGGAACTCTTTGAAGGGAGCAAGGGATTTTACTATAAATTCCCCCACACCTGTCCTGTGAAGCTCTTCTCCTTGGAGAGGGATTCTTCTTTACGGNCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCA]

[+] EMBL CD184322             [GGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAATATCAGTTGGGATGATGTCCTTTGGCTTAAACTCAACAAAAGGAACTCTTTGAAGGGAGCAAGGGATTTTACTATAAATTCCCCCACACCTGTCCTGTGAAGCTCTTCTCCTTGGAGAGGGATTCTTCTTTACGGNCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCA]


>consensus_10381#2 GGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGACTGAAAAACCTAAT ATCAGTTGGGATGATGTCCTTTGGCTTAAACTCAACAAAAGGAACTCTTTGAAGGGAGCA AGGGATTTTACTATAAATTCCCCCACACCTGTCCTGTGAAGCTCTTCTCCTTGGAGAGGG ATTCTTCTTTACGGNCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACC GAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTT GGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCA



consensusID : consensus_10381#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence
                              [CCTGCAGGTCGATTTTAGGAGGACCCCCTTGCCTATTTTAGCGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCCCGCTA]

[+] EMBL CD063229             [CCTGCAGGTCGATTTTAGGAGGACCCCCTTGCCTATTTTAGCGGGCCACCCGGAACTGGTAAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCCCGCTA]


>consensus_10381#3 CCTGCAGGTCGATTTTAGGAGGACCCCCTTGCCTATTTTAGCGGGCCACCCGGAACTGGT AAATCATATTTGGCCAAAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTA TCAAGCTCGGATTTGGTTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTA TTTGCAATGGCTAGAGAACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTA TGCGGGTCACGTAATGATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTA GTTCAAATGCAAGGTGTCTGTTCGAATAATGAAAACGTCCTAGTATTGGCCCGCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10381#0      ------------------------------------------------------------
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      TAGTTTCCCAAAGTCCTGGATGTCGCTTGAAAAAGGCATACAGTTAGTCACTCTCGCAAC 60
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      ------------------------------------------------------------
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      GAATGAAGACAAAGCAAAGAATTATGAGCAGGCGCTCAGATATTACGAACATGCAATTGA 120
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      ------------------------------------------------------------
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ATATTTCATTCATGCCATCAAGTATGAGGCTCCAAGTGATCGAGCTAAAGAATCTATTCA 180
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      ------------------------------------------------------------
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      GCTCAGTTGTGCCCGGTACCTTGACAGGGCTGAGCAAATAAAGAAGTACATGGCCTCAAA 240
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      ------------------------------------------------------------
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      GTCACGTGAAAAAAGCGAAGCAAACTCTGGTGGCACAAGGGAAAAGAAAAGAGATGATTC 300
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      -----------------------------TCCAGGCCAANAATTTGGCACGAGGAGCGAC 31
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      TGATAAAGAAGACGGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGAC 360
consensus_10381#2      -------------GGCGAAAACTCACGTTTTCAAATTCAGTTGCAAGGAGCGATAGTGAC 47
                                                                                   

consensus_10381#0      TGAAAAACCTAATATCAGTTGGGATGATGTCATT-GGCTTACAGTCAGCAAAGGAAGCT- 89
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      TGAAAAACCTAATATCAGTTGGGATGATGTCATT-GGCTTACAGTCAGCAAAGGAAGCT- 418
consensus_10381#2      TGAAAAACCTAATATCAGTTGGGATGATGTCCTTTGGCTTAAACTCAACAAAAGGAACTC 107
                                                                                   

consensus_10381#0      -TTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCC-ACACCTGTTCACTGGAAAGCGTA 147
consensus_10381#3      -----------------------------------C-CTGCAGGTCGATTTTAGGAGGAC 24
consensus_10381#1      -TTGAAGGAAGCAGTGATTCTACCTATAAAGTTTCC-ACACCTGTTCACTGGAAAGCGTA 476
consensus_10381#2      TTTGAAGGGAGCAAGGGATTTTACTATAAATTCCCCCACACCTGTCCTGTG-AAGCTCTT 166
                                                          *    *  **    *  *       

consensus_10381#0      CTCCTTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCA 207
consensus_10381#3      CCCCTTG--------CCTATTTTAGCGGGCCACCCGGAACTGGTAAATCATATTTGGCCA 76
consensus_10381#1      CTCCTTGGAGAGGGATTCTTCTTTACGGGCCACCCGGAACTGGTAAATCATATTTGGCCA 536
consensus_10381#2      CTCCTTGGAGAGGGATTCTTCTTTACGGNCCACCCGGAACTGGTAAATCATATTTGGCCA 226
                       * *****            * **  *** *******************************

consensus_10381#0      AAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGG 267
consensus_10381#3      AAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGG 136
consensus_10381#1      AAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGG 596
consensus_10381#2      AAGCTGTTGCAACCGAAGCAAACAATTCAACATTTTTGTCTGTATCAAGCTCGGATTTGG 286
                       ************************************************************

consensus_10381#0      TTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAG 327
consensus_10381#3      TTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAG 196
consensus_10381#1      TTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAG 656
consensus_10381#2      TTAGTAAATGGCTTGGTGAATCTGAAAAATTGGTGAGATCACTATTTGCAATGGCTAGAG 346
                       ************************************************************

consensus_10381#0      AACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATG 387
consensus_10381#3      AACAGAAACCAAGTATAATTTTCATCGATGAAGTTGATTCGTTATGCGGGTCACGTAATG 256
consensus_10381#1      AACAGANACCAAGTATAATTTTCATCGATGAAGNTGATTCGNTATGCGGGTCACGTAATG 716
consensus_10381#2      AACAGAAACCA------------------------------------------------- 357
                       ****** ****                                                 

consensus_10381#0      ATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTG 447
consensus_10381#3      ATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGTTCAAATGCAAGGTG 316
consensus_10381#1      ATAATGAATCAGAGTCTACAAGACGGATAAAAACTGAATTTCTAGNTTCAAATGCAGGTG 776
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      TCTGTTCGAATAATGAAAACGTCCTAGTATTGGCA-GCTACAAATACTCCTTGGACTTTA 506
consensus_10381#3      TCTGTTCGAATAATGAAAACGTCCTAGTATTGGCCCGCTA-------------------- 356
consensus_10381#1      TCTGTTC----------------------------------------------------- 783
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      GATTCCGCTATACGTCGTCGTTTTGAAAAGCGTATATATATTCCCCTTCCTGAAACAGGT 566
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ------------------------------------------------------------
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      GAACGTGTTAGTATGTTCAAAACGAATCTGGGAAACATATTTCATAGTCTGGTAGAGAAA 626
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ------------------------------------------------------------
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      GACTTTATTGAACTGGGGGCAAGAAGCACGGGTTATTCAGGTGCGGACATATCAGTTGTT 686
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ------------------------------------------------------------
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      GTTCGGGAAGCTTTATGATGCCTGTTCGGAAGTTCANACGTCACACACTTTAATATGTTA 746
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ------------------------------------------------------------
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      CTGGTCCTCTNCTATGATCATCAAGATGTCATGATCTTTATGCATGCTCCCAGAGACATG 806
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ------------------------------------------------------------
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      TGCGATGAATGATNGAAAAAGCCNATGATACTTAAGACCCATGCTTCTGATTGTGATCAT 866
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ------------------------------------------------------------
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      AACATAGCACGTATGCTAACTACACTGTATTACAGATGCGAGACTGATTTTTCAAAGTCT 926
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ------------------------------------------------------------
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      GCAACTGTAGATTACATTGTGCATTAATAATTTTTTAGCAACAATCTGACTATAGTTCCT 986
consensus_10381#3      ------------------------------------------------------------
consensus_10381#1      ------------------------------------------------------------
consensus_10381#2      ------------------------------------------------------------
                                                                                   

consensus_10381#0      TCCCGTANGACAATCTCTATCGTCTGGCCCATGAAAGACCCTTAA 1031
consensus_10381#3      ---------------------------------------------
consensus_10381#1      ---------------------------------------------
consensus_10381#2      ---------------------------------------------
                                                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)