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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1238 fasta sequence
[CTATGGTCTTTTTCTAAAAAAAACGAATATTTAAGTAATATTTTGGAAGAACGGACTATGAAACGGGAAGTAGGTCCTAAAAAACGACCACACTGGCTAAAAAACACTTTGAATAGTAAATACATTCATTATGGTAAGATAAACATTGAAAGGAAGAAAAACAAAATAGATGAGCAAGTGAAAGTGAATCATTTTTCTCATTCAATACAAATAAAAAATAGTTTTGGCAAATCAATTATTTCGCAATACATTATATATACGGCTATCAGCTTGTTTATTCAGCTTTCCTTGCCTTTGTTGTTGTTCGTTTTGATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCCTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAAGATTAAATATAGAGAACCCGAGTATAGTCCATACAAACCTTTATTCAACACGACTGAGGGTAGTCTACATTCAGTGAAGTTTGGAGTAGAAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGTTGACGCGCCCGAATACGACCTTTAGAACTTATGTCAACCCGAACACCCTGGAAATAATAAACTGGATTGATGACTTCAACTATATATGATCCAGATGGAACATTAGTCACTTCGAAATTACCATCTGCTTTCACAAAACCAACGAACTGATCACCGGCTATGTTAATCCGTGTGTTGACATGCCAGTCTGGAGGAGCTTCAGGAGGCATTACGACAGTACCTTCAATGACGTAACTATAACACTTGCTAAGATGGAAAATCGTGAACAACCAAACGGGATATCGCCACATGAGGAATCAATTGTGTAGAAGAAACTTATGAATAGCTCTAGATAGAGTATGTAACCCAATTATACTACTTCTTGATCGGTTCAAGGGTG]
[-] EMBL CD137301 [CTATGGTCTTTTTCTAAAAAAAACGAATATTTAAGTAATATTTTGGAAGAACGGACTATGAAACGGGAAGTAGGTCCTAAAAAACGACCACACTGGCTAAAAAACACTTTGAATAGTAAATACATTCATTATGGTAAGATAAACATTGAAAGGAAGAAAAACAAAATAGATGAGCAAGTGAAAGTGAATCATTTTTCTCATTCAATACAAATAAAAAATAGTTTTGGCAAATCAATTATTTCGCAATACATTATATATACGGCTATCAGCTTGTTTATTCAGCTTTCCTTGCCTTTGTTGTTGTTCGTTTTGATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCCTTTCTGCAGATTTTCGT ]
[-] EMBL CD161427 [ GATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAAGATTAAATATAGAGAACCCGAGTATAGTCCATACAAACCTTTATTCAACACGACTGAGGGTAGTCTACATTCAGTGAAGTTTGGAGTAGAAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGTTGACGCGCCCGAATACGACCTTTAG ]
[-] EMBL CD178837 [ TATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGTTGACGCGCCCGAATACGACCTTTAGAACTTATGTCAACCCGAACACCCTGGAAATAATAAACTGGATTGATGACTTCAACTATATATGATCCAGATGGAACATTAGTCACTTCGAAATTACCATCTGCTTTCACAAAACCAACGAACTGATCACCGGCTATGTTA ]
[+] EMBL CD160953 [ AATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGTTGACGCGCCCGAATACGACCTTTAGAACTTATGTCAACCCGAACACCCTGGAAATAATAAACTGGATTGATGACTTCAACTATATATGATCCAGATGGAACATTAGTCACTTCGAAATTACCATCTGCTTTCACAAAACCAACGAACTGATCACCGGCTATGTTAATCCGTGTGTTGACATGCCAGTCTGGAGGAGCTTCAGGAGGCATTACGACAGTACCTTCAATGACGTAACTATAACACTTGCTAAGATGGAAAATCGTGAACAACCAAACGGGATATCGCCACATGAGGAATCAATTGTGTAGAAGAAACTTATGAATAGCTCTAGATAGAGTATGTAACCCAATTATACTACTTCTTGATCGGTTCAAGGGTG]
[+] EMBL CD181996 [ CAACTATATATGATCCAGATGGAACATTAGTCACTTCGAAATTACCATCTGCTTTCACAAAACCAACGAACTGATCACCGGCTATGTTAATCCGTGTGTTGACATGCCAGTCTGGAGGAGCTTCAGGAGGCATTACGACAGTACCTTCAATGACGTAACTATAACACTTGCT ]
consensusID : consensus_10390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 569 fasta sequence
[TTGATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGT-TGACGCGCCCGAATACGACCTTTAAAACTTATGTCAACCCGAACACCCTGNAAATA-ATA-AACTGGATTGA-TGACCTCAACTATATATGATCCAGATGGAGACATTAGTCAC]
[+] EMBL CD123051 [TTGATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGT TGACGCGCCCGAATACGACCTTTA ]
[+] EMBL CD122839 [TTGATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGGTACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGT TGACGCGCCCGAATACGACCTTTA ]
[+] EMBL CD123080 [TTGATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGT TGACGCGCCCGAATACGACCTTTA ]
[+] EMBL CD161343 [ ATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGATGCATTTAGT TGACGCGCCCGAATACGACCTTTA ]
[+] EMBL CD161129 [ ATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGATGCATTTAGT TGACGCGCCCGAATACGACCTTTA ]
[+] EMBL CD122827 [ ATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGT TGACGCGCCCGAATACGACCTTTA ]
[+] EMBL BG931814 [ gTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGGTGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGA ]
[-] EMBL CD060228 [ AAGTGGTATTACTAGTGTTACTGACGCTGGTGTATTGGCTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTTCTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCCTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTACT TGACGCGCCCAGATACaga ]
[-] EMBL SMAA69229 [ nnnnCTTTTCCAAAGATTTTCGTTTATTTATCGCCGTTGGATTGGTCTTCTTAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGA ]
[+] EMBL CD125027 [ TAGTATTTCCACCAAATAAAGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGTGGTGCATTTAGT TGACGCGCCCGAATACGACCTTTAAAACTTATGTCAACCCGAACACCCTGNAAATA ATA AACTGGATTGA TGACCTCA ]
[-] EMBL CD127213 [ AGACAGTGACGAAAGGAATTCACTCATATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACTAGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTACATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAAGTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATTGGGCTGCGGTGCATTTAGTGGGGCGTGCCAGTATACGACCTTTAGAACTTATGTCAAGCCGAACGCCCTGAAGATAGATAGGTCTGGATCGAGTGGCTTCCACTATATATGATCCAGATGGAGACATTAGTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10390#0 CTATGGTCTTTTTCTAAAAAAAACGAATATTTAAGTAATATTTTGGAAGAACGGACTATG 60
consensus_10390#1 ------------------------------------------------------------
consensus_10390#0 AAACGGGAAGTAGGTCCTAAAAAACGACCACACTGGCTAAAAAACACTTTGAATAGTAAA 120
consensus_10390#1 ------------------------------------------------------------
consensus_10390#0 TACATTCATTATGGTAAGATAAACATTGAAAGGAAGAAAAACAAAATAGATGAGCAAGTG 180
consensus_10390#1 ------------------------------------------------------------
consensus_10390#0 AAAGTGAATCATTTTTCTCATTCAATACAAATAAAAAATAGTTTTGGCAAATCAATTATT 240
consensus_10390#1 ------------------------------------------------------------
consensus_10390#0 TCGCAATACATTATATATACGGCTATCAGCTTGTTTATTCAGCTTTCCTTGCCTTTGTTG 300
consensus_10390#1 ------------------------------------------------------------
consensus_10390#0 TTGTTCGTTTTGATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGG 360
consensus_10390#1 ---------TTGATGCTGAGTTCGATGAACTTGAAGTGGTATTACTAGTGTTACTGACGG 51
***************************************************
consensus_10390#0 TGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCCTTT 420
consensus_10390#1 TGGTGTATTGACTTGGACTCTCAGAAATCCCTGCACTATTCGTAACTTGGCGATGCTTTT 111
******************************************************** ***
consensus_10390#0 CTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATA 480
consensus_10390#1 CTGCAGATTTTCGTTTATTTATTGTTGTTGGATTGGTCTTCTTAGTATTTCCACCAAATA 171
************************************************************
consensus_10390#0 AAGACAGTGACGAAAGGAAGATTAAATATAGAGAACCCGAGTATAGTCCATACAAACCTT 540
consensus_10390#1 AAGACAGTGACGAAAGGAA----------------------------------------- 190
*******************
consensus_10390#0 TATTCAACACGACTGAGGGTAGTCTACATTCAGTGAAGTTTGGAGTAGAAATTCACTCAT 600
consensus_10390#1 ---------------------------------------------------TTCACTCAT 199
*********
consensus_10390#0 ATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACT 660
consensus_10390#1 ATCAGGTAATTGTTGTTGTGGATTAAGAATATTCATTTGTTGCATTTCTTTTTGTACACT 259
************************************************************
consensus_10390#0 AGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTAC 720
consensus_10390#1 AGGATCATTAGTATTCACTAATTTTGTCAATATCACAACCAGTAATAATGGAACTAGTAC 319
************************************************************
consensus_10390#0 ATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAA 780
consensus_10390#1 ATAAAGAACATTTGGATTGAATAATAGATCTAATGTGCGTAGTTGTTCACGTGCCTTGAA 379
************************************************************
consensus_10390#0 GTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATT 840
consensus_10390#1 GTAGACTGCTCTTCCAGAACTGGAAAGACGTAAGGGATACGGGAGTTCTTTCACAGCATT 439
************************************************************
consensus_10390#0 GGGCTGTGGTGCATTTAGTTGACGCGCCCGAATACGACCTTTAGAACTTATGTCAACCCG 900
consensus_10390#1 GGGCTGTGGTGCATTTAGTTGACGCGCCCGAATACGACCTTTAAAACTTATGTCAACCCG 499
******************************************* ****************
consensus_10390#0 AACACCCTGGAAATAATAAACTGGATTGATGACTTCAACTATATATGATCCAGATGGA-A 959
consensus_10390#1 AACACCCTGNAAATAATAAACTGGATTGATGACCTCAACTATATATGATCCAGATGGAGA 559
********* *********************** ************************ *
consensus_10390#0 CATTAGTCACTTCGAAATTACCATCTGCTTTCACAAAACCAACGAACTGATCACCGGCTA 1019
consensus_10390#1 CATTAGTCAC-------------------------------------------------- 569
**********
consensus_10390#0 TGTTAATCCGTGTGTTGACATGCCAGTCTGGAGGAGCTTCAGGAGGCATTACGACAGTAC 1079
consensus_10390#1 ------------------------------------------------------------
consensus_10390#0 CTTCAATGACGTAACTATAACACTTGCTAAGATGGAAAATCGTGAACAACCAAACGGGAT 1139
consensus_10390#1 ------------------------------------------------------------
consensus_10390#0 ATCGCCACATGAGGAATCAATTGTGTAGAAGAAACTTATGAATAGCTCTAGATAGAGTAT 1199
consensus_10390#1 ------------------------------------------------------------
consensus_10390#0 GTAACCCAATTATACTACTTCTTGATCGGTTCAAGGGTG 1238
consensus_10390#1 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||