These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1116 fasta sequence [TGTAATACGGCCTTTCTTCGGGATACTGACAAACTGCACCCACTGCATAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGGATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCAAAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACTGATCTGATCTAATTTTATTGTTCCAGTAAGAGGAGAGTAGTGAAGACAGAAGATAGTTTGTGTTTCGCGAGTGTGTTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTCTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACACGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACTA-TTCACA-ATCGGGGATCCTCTAGAG-TGACCGTCTA] [-] EMBL CD086660 [TGTAATACGGCCTTTCTTCGGGATACTGACAAACTGCACCCACTGCATAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAA ] [+] EMBL CD153915 [ TTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGGATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCANAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACCGATCTGATCTAATTNTATTGTTCCAGTAAGAGGAGAGTAGTGAAGACAGAAGATAGTTTGTG ] [-] EMBL CD097849 [ ATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGGATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCATCTACTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCAAAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACTGATCTGATCTAATT ] [+] EMBL CD127361 [ TGTTAATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGGATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCAAAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACCGATCTGATCTAATTTTATTGTTCCAGTAAGAGGAG ] [-] EMBL CD097924 [ TGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGGATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTGACTAACTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCACCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCAAAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACTGATCTGATCTAATT ] [+] EMBL CD154190 [ ATTAACATAAATAAAACTGGGATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAACTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCANAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACTGATCTGATCTAATTNTATTGTTCCAGTAAGAGGAGAGTAGTGAAGACAGAAGATAGTTTGTGTTTCGCGAGTGT ] [+] EMBL CD111201 [ ATTAACATAAATAAAACTGGGATGAAAGTTATTAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGT ] [+] EMBL CD191886 [ GTTATCAGCGGATAGTGGTTGGCAAACTAACTAGCTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCAAAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACCGATCTGATCTAATTTTATTGTTCCAGTAAGAGGAGAGTAGTGAAGACAGAAGATAGTTTGTGCTTTGCGAGTGTGTTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTA ] [-] EMBL CD116493 [ ATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGATGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCAAAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACTGATCTGATCTAATTTTATTGTTCCAGTAAGAGGAGAGTAGTGAAGACAGAAGATAGTTTG ] [-] EMBL CD065328 [ CACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTCTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACACGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACTATTTCACACATCGGGGATCCTCTA ] [-] EMBL CD065314 [ AGACTTATGGTCATTTCGATTGTC TGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACACGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACTA TTCACA ATCGGGGATCCTCTAGAG TGACCG ] [-] EMBL CD065336 [ AGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACTA TTCACA ATCGGGGATCCTCTATAGACGACC TCTA] consensusID : consensus_10400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence [ATGCTATGCCTCGCAGTCGACTCTAGAAGATCCCCTCTTCTTCTTCTTCTTCCTCCTCTATCTATCTGTGTTACTCACTATTTACCTATAGATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGGTGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACATTGACAAACAAACTAACTGCATAGTTTTCAACATTTGTTTACATGATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGA] [+] EMBL CD127458 [ATGCTATGCCTCGCAGTCGACTCTAGAAGATCCCCTCTTCTTCTTCTTCTTCCTCCTCTATCTATCTGTGTTACTCACTATTTACCTATAGATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGT ] [+] EMBL CD199560 [ ctctTCTTCTTCTTCTTCTTCCTCCTCTATCTATCTGTGTTACTCACTATTTACCTATAGATGATAATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCTCACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATTGTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGGTGAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACATTGACAAACAAACTAACTGCATAGTTTTCAACATTTGTTTACATGATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGA] consensusID : consensus_10400#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [TCATTTAGTAAAATTAGATANATAACGATGGTGGAATAAGTAGGTTAGATTATTGATTGTNTCTTTTTNCAGTATTGCACTCNACTGTTTATTNAAAACATTGCNATTAGTTNATTATTTAATAGTAAGGCCNGCTCAGTGAACAAGTTTGTTTAAATANCCNCCNATTATTGATCGTGCCTAAGGGTACCATAATATATAC] [+] EMBL AA559703 [TCATTTAGTAAAATTAGATANATAACGATGGTGGAATAAGTAGGTTAGATTATTGATTGTNTCTTTTTNCAGTATTGCACTCNACTGTTTATTNAAAACATTGCNATTAGTTNATTATTTAATAGTAAGGCCNGCTCAGTGAACAAGTTTGTTTAAATANCCNCCNATTATTGATCGTGCCTAAGGGTACCATAATATATAC] consensusID : consensus_10400#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence [TAAACAAACTTCTTCACTGAGCAGGCCTTACTATTAAACAATTAACTAATAGCAATGTTTTTAATAAACAGTTGAGTGCAATACTGAAAAAAGAAACAATCAATAATCTAACCTACTTATTCCACCATCATTATATATCTAATTTTACTAAATG] [+] EMBL BE463400 [TAAACAAACTTCTTCACTGAGCAGGCCTTACTATTAAACAATTAACTAATAGCAATGTTTTTAATAAACAGTTGAGTGCAATACTGAAAAAAGAAACAATCAATAATCTAACCTACTTATTCCACCATCATTATATATCTAATTTTACTAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TGTAATACGGCCTTTCTTCGGGATACTGACAAACTGCACCCACTGCATAGTTTTCTACAT 60 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTTAGACTGTTGAA 120 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGA 180 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 ATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGT 240 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAAC 300 consensus_10400#1 --------------------ATGCTATGCCTCGCAGTCG--ACTCTAGAAGATCCCCTCT 38 consensus_10400#2 ---------------------------TCATTTAGTAAAATTAGATANATAACGATGGTG 33 consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TGGGATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTATGATA 360 consensus_10400#1 TCTTCTTCTTCTTCCTCCTCTATC-TATCTGTGTTACTCACTATTTACCTATAGATGATA 97 consensus_10400#2 G-AATAAGTAGGTTAGATTATTGATTGTNTCTTTTTNCAGTATTG--CACTCNACTGTTT 90 consensus_10400#3 ----TAAACAAACTTCTTCACTGAGCAGGCCTT-----ACTATTA--AAC--AATTAACT 47 consensus_10400#0 ATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCT 420 consensus_10400#1 ATAATGGACAGGTTGGGTGGTCGTCATCTGCTACTATTACTTCTGTTAATTCTACTATCT 157 * * * * * ** * * * * * * * consensus_10400#2 ATT--NAAAACATTGCNATTAGTTNATTA--TTTAATAGT-AAGGCCNGCTCAGTGAACA 145 consensus_10400#3 AAT--AGCAATGTTTTTAATAAACAGTTGAGTGCAATACTGAAAAAAGAAACAATCAATA 105 consensus_10400#0 CACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATT 480 consensus_10400#1 CACTCATCAGCACTTACTGTAAGCGGATTGCCGAATTGTTGAATGACTCAAGTCTCTATT 217 * * ** * * * * ** * * consensus_10400#2 AGTTTGTTTAAATANCCNCCNATTATTGATCGTGCCTAAGGGTACCATAATATATAC--- 202 consensus_10400#3 ATCTAACCTACTTATTCCACCATCATTA--TATATCTAATTTTACTA-AATG-------- 154 consensus_10400#0 GTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGAT 540 consensus_10400#1 GTCCAACGTGAACAATCTTCTATTACGTTTGGTTTATAGTGGTTGTTTTATTGGCAAGGT 277 * * * * ** * * ** * ** consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 GAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACCTTGACAACTGTGTGGGTCAATGCA 600 consensus_10400#1 GAGTGTTTTTGTTCAACTTCTAGTGTCTCTTCCACATTGACAAACAAAC---TAACTGCA 334 consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 AAAATCACAATAATAGTAACTGTAATAATCGGAAATGAAGACTGATCTGATCTAATTTTA 660 consensus_10400#1 TAGTTTTCAACATTTGTTTACATGATTTT----------GACTGTTTC--TCTAATATGA 382 consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TTGTTCCAGTAAGAGGAGAGTAGTGAAGACAGAAGATA-GTTTGTGTTTCGCGAGTGTGT 719 consensus_10400#1 ACAGGTTCATGTTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATAC 442 consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGC 779 consensus_10400#1 TTTTATTACC-TTGTT-CTATGACTGAATTAATTTTGTCAATGA---------------- 484 consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAG 839 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 AGAAGACTTATGGTCATTTCGATTGTCTTGGTACAATATGAATTTTTGGAATGAAGCAGT 899 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATC 959 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 TGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACACGACGTCT 1019 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------------------------------ consensus_10400#3 ------------------------------------------------------------ consensus_10400#0 CAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTA 1079 consensus_10400#1 ------------------------------------------------------------ consensus_10400#2 ------------------------------------- consensus_10400#3 ------------------------------------- consensus_10400#0 CTATTCACAATCGGGGATCCTCTAGAGTGACCGTCTA 1116 consensus_10400#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||