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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 683 fasta sequence
[TTGCAAAAAAGAGTATTCAATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTAC---CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTG-CTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACATAGCTAGCTAAGCCTCAGGCTTTTCTCAATACCTAAATTGCTGAGTATTGCTTCTCAAAAGGAGAGTATTATTACAAAAGTTAACTGAAATATAAAAATTACCATTGAAAGTAAAAAAAACATGTTTAACTTTCTCATCTAAAAACTAACGTTTTGTTTGTTGTCAAATAAATTTATTCTGACTGGAAAAAAAAAAAAAAAAAA]
[-] EMBL CD178404 [TTGCAAAAAAGAGTATTCAATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTAC CAAACCTTCca ]
[+] EMBL CD083405 [ AGTATTCAATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTG CTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACGATACATAGCTAGCTAAGCCTCAGGCTTTTCTCAATACCTAAATTGCTGAGTATTGCTTCTCAAAAGGAGAGTATTA ]
[+] EMBL AF521094 [ ATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACCAGCAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTG CTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACAT ]
[+] EMBL CD186371 [ ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCA ]
[+] EMBL CD186339 [ ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCA ]
[-] EMBL CD182887 [ AGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTTTACCACTGAACCTACAGTAACTACCAGCAAACCTTCACCT ]
[-] EMBL CD182902 [ AAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTTTACCCCTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTTTACCCCTGAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTG CTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT ]
[-] EMBL CD179668 [ AACTTTTACCATTAGACCTACAGTAACTACTCNTAAAGCAGCAGCGACTTCTACCATTAAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGNCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACGTAGC ]
[-] EMBL AI395567 [ tACTAC CAAACCTTCACTTGCTAAACCTGCAGCATCTAATACTG CTAAACCTGCAGCATCTACTCNTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACATAGCTAGCTAAGCCTCAGGCTTTTCTCAATACCTAAATTGCTGAGTATTGCTTCTCAAAAGGAGAGTATTATTACAAAAGTTAACTGAAATATAAAAATTACCATTGAAAGTAAAAAAAACATGTTTAACTTTCTCATCTAAAAACTAACGTTTTGTTTGTTGTCAAATAAATTTATTCTGACTGGAAAAAAAAAAAAAAAAAA]
[-] EMBL AA999406 [ GCTTCTAATACTG CTAAACCTGCAGCATCTATTCCTAAGAAACCACATGATGAACGTGTTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGGGATTGGTTTTATACTACAATACATAGCTGGGTAAGCCTAAGGTTTTTCTCAATTCCTAAATTGCTGAGTATTGCTTCTCAAAAGGAGGGTTTTATTACAAAAGTTAACTGAAATATAAAAATTACCATTGAAGGTAAAAAAAACGGGTTTAAGTTTTTCATCTAAAAAATAACGTTTTGTTTGTTGTCAAAGAAATTTA ]
consensusID : consensus_10401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 339 fasta sequence
[ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTAC---CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT]
[+] EMBL BE505109 [ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTAC TACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATT AACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAG ]
[-] EMBL CD182758 [ AATAGTCGTACACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAATAACTACTCCT ]
[-] EMBL CD182811 [ AGTCGTACACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTTCTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTTCCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTTCCATTAAACCTACAGTGACTACCAGCAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT]
[+] EMBL CD182785 [ TGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCACCTTCTACCATTAAACCTACAGTACCTACTCCTAAAGCAGCAGCACCTTCAACCATTAAACCTACAGTACCTACCAGCAAACCTTCACCTGCTAAACCTGCAGCATCTAATAC ]
[-] EMBL CD182773 [ AAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT]
[-] EMBL CD183852 [ AGTATTTACTCCTAAAGCAGCAGAAAATTAAACCATTGAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10401#0 TTGCAAAAAAGAGTATTCAATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAAT 60
consensus_10401#1 ----------------------ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAAT 38
**************************************
consensus_10401#0 TTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTAC 120
consensus_10401#1 TTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTAC 98
************************************************************
consensus_10401#0 ACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATC 180
consensus_10401#1 ACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATC 158
******************* ****************************************
consensus_10401#0 TACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGC 240
consensus_10401#1 TACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGC 218
************************************************************
consensus_10401#0 AGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTAC 300
consensus_10401#1 AGCAGCAACTTCTACCATTAAACCTACAGTAACTAC------------------------ 254
***************** * ****************
consensus_10401#0 CACTGAACCTACAGTAACTACCAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGC 360
consensus_10401#1 ---------------------CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGC 293
***************************************
consensus_10401#0 TAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGC 420
consensus_10401#1 TAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT-------------- 339
**********************************************
consensus_10401#0 GGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACAT 480
consensus_10401#1 ------------------------------------------------------------
consensus_10401#0 AGCTAGCTAAGCCTCAGGCTTTTCTCAATACCTAAATTGCTGAGTATTGCTTCTCAAAAG 540
consensus_10401#1 ------------------------------------------------------------
consensus_10401#0 GAGAGTATTATTACAAAAGTTAACTGAAATATAAAAATTACCATTGAAAGTAAAAAAAAC 600
consensus_10401#1 ------------------------------------------------------------
consensus_10401#0 ATGTTTAACTTTCTCATCTAAAAACTAACGTTTTGTTTGTTGTCAAATAAATTTATTCTG 660
consensus_10401#1 ------------------------------------------------------------
consensus_10401#0 ACTGGAAAAAAAAAAAAAAAAAA 683
consensus_10401#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||