These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1043 fasta sequence [GTTTTATTAGAACCATTTTGGTGACGAACAATATTGGAATCTTGTTACTTTCTGCTTTGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA-TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT--GCTA-AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA] [+] EMBL CD080407 [GTTTTATTAGAACCATTTTGGTGACGAACAATATTGGAATCTTGTTACTTTCTGCTTTGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGATNNGCT AAGC AGAAGTACTANCAGTAAATTAGT ] [+] EMBL CD078487 [ CTTGTTACTTTCTGCTTTGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGNAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTT ] [+] EMBL CD078832 [ TGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA NAGCAAGAAGTACTANCAGTANATTAGT ] [+] EMBL CD078795 [ TGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTGCTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTANNAGC AGAAGTACTACNAGTAAATT ] [+] EMBL CD077837 [ aggGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGA TATACTAAACCTGATGAT ] [+] EMBL CD080585 [ GTGATTAGAAAAATGCATTTATATTTGACTATATTTGCTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACANAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTNTGTGAACTTGATCGAA GAATAGAGG ] [-] EMBL CD200444 [ ATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAATTTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAA TAGT ] [-] EMBL CD074499 [ AAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA] [-] EMBL CD074322 [ AGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA] [-] EMBL CD073256 [ AATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA] [-] EMBL CD073292 [ A TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA] [-] EMBL BG931513 [ TCATTACAACAAGATGATCTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTT ] consensusID : consensus_10402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 497 fasta sequence [GAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAGTGGTAGGCAACTTATTGGCAGCCTCAGTAGCTTTCGTGTATGCATCCAATGACCTTTGGACGACTTCAGCTCGAGTCTTATCACTGGCGACTTCAGCGAGATACCGATTGTAGTCACCTTGCATTTTCAAGAAAAAAACTTTGCTTTCGTCGTTACTTTCCTGTACAAGTAGATAATCTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCA-AAACCTGATCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCTTTCGTTTCACTTCCGGATATCACTCTCCATGCTGATCTTCTAGCACCTACGACATTTTTATATGCCACTGACAGTAAATTCCGTTCTTCGTTCCCTAAAGTCCCCGAAGCCTCGGTATAACGCTTCATAGCTGCAGCCATATCA] [+] EMBL CD195560 [GAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAGTGGTAGGCAACTTATTGGCAGCCTCAGTAGCTTTCGTGTATGCATCCAATGACCTTTGGACGACTTCAGCTCGAGTCTTATCACTGGCGACTTCAGCGAGATACCGATTGTAGTCACCTTGCATTTTCAAGAAAAAAACTTTGCTTTCGTCGTTACTTTCCTGTACAAGTAGATAATCTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCA AAACCTGATCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCTTTCGTTTCACTTCCGGATAT ] [-] EMBL BG932378 [ GACGACTTCAGCTCGAGTCTTATCACTGGCGACTTCAGCGAGATACCGATTGTAGTCACCTTGCATTTTCAAGAAAAAAACTTTGCTTTCGTCGTTACTTTCCTGTACAAGTAGATAATCTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCA AAACCTGTTCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCTTTCGTTTCACTg ] [+] EMBL CD167377 [ TCCTGTAC AGTAGATAATC TTGAGC AAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCACAAACCTGATCACAAA TGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCTTTCGTTTCACTTCCGGATATCACTCTCCATGCTGATCTTCTAGCACCTACGACATTTTTATATGCCACTGACAGTAAATTCCGTTC ] [-] EMBL CD181395 [ GAT ATCTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCA AAACCTGATCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCCTTCGTTTCACTTCCGGATATCACTCTCCATGCTGATCTTCTAGCACCTACGACATTTTTATATGCCACTGATAGTAAATTCCGTTCTTCGTTCCCTAAAGTCCCCGAAGCCTCGGTATAACGCTTCATAGCTGCAGCCATATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10402#0 GTTTTATTAGAACCATTTTGGTGACGAACAATATTGGAATCTTGTTACTTTCTGCTTTGA 60 consensus_10402#1 ------------------------------------------------------------ consensus_10402#0 TACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATA 120 consensus_10402#1 ------------------------------------------------------------ consensus_10402#0 ATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATAC 180 consensus_10402#1 ------------------------------------------------------------ consensus_10402#0 ACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAA 240 consensus_10402#1 ------------------------------------------------------------ consensus_10402#0 GATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGT 300 consensus_10402#1 ------------------------------------------------------------ consensus_10402#0 TGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGT 360 consensus_10402#1 ------------------------------------------------------------ consensus_10402#0 GTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGAT 420 consensus_10402#1 ------------------------------------------------------------ consensus_10402#0 TCAAGATGTGGTAATGATCAATTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAA 480 consensus_10402#1 -----------------------GAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAG 37 ** * * *** ** ** * consensus_10402#0 TATTATGATGAATGTCG-TGATCTTAGCGGTTTATGTGATTGGGATCAA-AATGAAAGTA 538 consensus_10402#1 TGGTAGGCAACTTATTGGCAGCCTCAGTAGCTTTCGTGTATGCATCCAATGACCTTTGGA 97 * ** * * * * ** ** * ** *** ** *** * * * consensus_10402#0 CATTTTCTTTTCGACTTGGAATG-TGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCT 597 consensus_10402#1 CGACTTCAGCTCGAGTCTTATCACTGGCGACTTCAGC-GAGATACCGATTGTAGTCACCT 156 * *** **** * * *** * ** * * * * * *** ** consensus_10402#0 ACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGATGCTAAAGCAAGAAGT 657 consensus_10402#1 --TGCATTTTCAAGAAAAAAACTTTGCTTTCGTCGTTACTTTCCTGTACAAGTAGATAAT 214 * *** **** * * * * *** *** * ** *** * * * consensus_10402#0 ACTACAAGTAAA--TTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAA 715 consensus_10402#1 -CTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCAAAACC-TGA 272 ** ** *** ** * ** * ** * * ** *** * * * * consensus_10402#0 TTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATT 775 consensus_10402#1 TCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCT-CTGCAATTTGACT 331 * * **** ** ** **** * * * * *** *** * consensus_10402#0 TGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATC 835 consensus_10402#1 TTTCATATGGTCATTCGCCGCTTTCGTT-TCACTTCCGGATATCACTCTCCATGCTGATC 390 * *** ** * * * *** ** * * * * * *** consensus_10402#0 GATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCAC 895 consensus_10402#1 T-TCTAGCACCTACGACATTTTTATATGCCACTGACAGTAAATTCCGTTCTTCGTTCCCT 449 * * * * * * * ** * * * * * * ** * ** consensus_10402#0 AAGAAGAACGTG--TTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATT 953 consensus_10402#1 AAAGTCCCCGAAGCCTCGGTATAACGCTTC---ATAGCTGCAGCCATA-TCA-------- 497 ** ** ** * *** * * *** * *** *** consensus_10402#0 GAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATT 1013 consensus_10402#1 ------------------------------------------------------------ consensus_10402#0 GATTTTTAAAAAAATTAATAATAAATAATA 1043 consensus_10402#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||