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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1043 fasta sequence
[GTTTTATTAGAACCATTTTGGTGACGAACAATATTGGAATCTTGTTACTTTCTGCTTTGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA-TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT--GCTA-AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA]
[+] EMBL CD080407 [GTTTTATTAGAACCATTTTGGTGACGAACAATATTGGAATCTTGTTACTTTCTGCTTTGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGATNNGCT AAGC AGAAGTACTANCAGTAAATTAGT ]
[+] EMBL CD078487 [ CTTGTTACTTTCTGCTTTGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGNAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTT ]
[+] EMBL CD078832 [ TGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA NAGCAAGAAGTACTANCAGTANATTAGT ]
[+] EMBL CD078795 [ TGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTGCTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTANNAGC AGAAGTACTACNAGTAAATT ]
[+] EMBL CD077837 [ aggGATACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATAATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATACACATCATATCTTGTACTTGCTCAAGAAGA TATACTAAACCTGATGAT ]
[+] EMBL CD080585 [ GTGATTAGAAAAATGCATTTATATTTGACTATATTTGCTTTATACACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAAGATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGTTGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGTGTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACANAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTNTGTGAACTTGATCGAA GAATAGAGG ]
[-] EMBL CD200444 [ ATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAATTTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAA TAGT ]
[-] EMBL CD074499 [ AAATCAATGTTATTGTCGTTCTGGCGATTCAAGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA]
[-] EMBL CD074322 [ AGATGTGGTAATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA]
[-] EMBL CD073256 [ AATGATCAA TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA]
[-] EMBL CD073292 [ A TTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAATATTATGATGAATGTCGTGATCTTAGCGGTTTATGTGATTGGGATCAAAATGAAAGTACATTTTCTTTTCGACTTGGAATGTGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCTACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGAT GCTA AAGCAAGAAGTACTACAAGTAAATTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAATTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATTTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATTGAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATTGATTTTTAAAAAAATTAATAATAAATAATA]
[-] EMBL BG931513 [ TCATTACAACAAGATGATCTGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATCGATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCACAAGAAGAACGTGTT ]
consensusID : consensus_10402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 497 fasta sequence
[GAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAGTGGTAGGCAACTTATTGGCAGCCTCAGTAGCTTTCGTGTATGCATCCAATGACCTTTGGACGACTTCAGCTCGAGTCTTATCACTGGCGACTTCAGCGAGATACCGATTGTAGTCACCTTGCATTTTCAAGAAAAAAACTTTGCTTTCGTCGTTACTTTCCTGTACAAGTAGATAATCTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCA-AAACCTGATCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCTTTCGTTTCACTTCCGGATATCACTCTCCATGCTGATCTTCTAGCACCTACGACATTTTTATATGCCACTGACAGTAAATTCCGTTCTTCGTTCCCTAAAGTCCCCGAAGCCTCGGTATAACGCTTCATAGCTGCAGCCATATCA]
[+] EMBL CD195560 [GAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAGTGGTAGGCAACTTATTGGCAGCCTCAGTAGCTTTCGTGTATGCATCCAATGACCTTTGGACGACTTCAGCTCGAGTCTTATCACTGGCGACTTCAGCGAGATACCGATTGTAGTCACCTTGCATTTTCAAGAAAAAAACTTTGCTTTCGTCGTTACTTTCCTGTACAAGTAGATAATCTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCA AAACCTGATCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCTTTCGTTTCACTTCCGGATAT ]
[-] EMBL BG932378 [ GACGACTTCAGCTCGAGTCTTATCACTGGCGACTTCAGCGAGATACCGATTGTAGTCACCTTGCATTTTCAAGAAAAAAACTTTGCTTTCGTCGTTACTTTCCTGTACAAGTAGATAATCTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCA AAACCTGTTCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCTTTCGTTTCACTg ]
[+] EMBL CD167377 [ TCCTGTAC AGTAGATAATC TTGAGC AAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCACAAACCTGATCACAAA TGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCTTTCGTTTCACTTCCGGATATCACTCTCCATGCTGATCTTCTAGCACCTACGACATTTTTATATGCCACTGACAGTAAATTCCGTTC ]
[-] EMBL CD181395 [ GAT ATCTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCA AAACCTGATCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCTCTGCAATTTGACTTTTCATATGGTCATTCGCCGCCTTCGTTTCACTTCCGGATATCACTCTCCATGCTGATCTTCTAGCACCTACGACATTTTTATATGCCACTGATAGTAAATTCCGTTCTTCGTTCCCTAAAGTCCCCGAAGCCTCGGTATAACGCTTCATAGCTGCAGCCATATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10402#0 GTTTTATTAGAACCATTTTGGTGACGAACAATATTGGAATCTTGTTACTTTCTGCTTTGA 60
consensus_10402#1 ------------------------------------------------------------
consensus_10402#0 TACATCAATAGTAAAAGATCTACATTGATTACATTCATTAAAACTGAAGTCAAAGTAATA 120
consensus_10402#1 ------------------------------------------------------------
consensus_10402#0 ATACATTACATATTGGTGATTAGAAAAATGCATTTATATTTGACTATATTTACTTTATAC 180
consensus_10402#1 ------------------------------------------------------------
consensus_10402#0 ACATCATATCTTGTACTTGCTCAAGAAGATTATACTAAACCTGATGATGAATCAGATGAA 240
consensus_10402#1 ------------------------------------------------------------
consensus_10402#0 GATCCTTGTGAAAATGTAAAATGTAAATTGGGTGAAATGTGCAAAGAGGGAAAATGTAGT 300
consensus_10402#1 ------------------------------------------------------------
consensus_10402#0 TGTTTGGATAGTTGTCCATCAGAATGGAATAGTTATAATAGACAATTATGTGTTGATGGT 360
consensus_10402#1 ------------------------------------------------------------
consensus_10402#0 GTCACATATAGACATGAATGTGATCTATGGAGAAATCAATGTTATTGTCGTTCTGGCGAT 420
consensus_10402#1 ------------------------------------------------------------
consensus_10402#0 TCAAGATGTGGTAATGATCAATTTAGTAATCATAGAGCAAATGAAAACTCGGCAATAAAA 480
consensus_10402#1 -----------------------GAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAG 37
** * * *** ** ** *
consensus_10402#0 TATTATGATGAATGTCG-TGATCTTAGCGGTTTATGTGATTGGGATCAA-AATGAAAGTA 538
consensus_10402#1 TGGTAGGCAACTTATTGGCAGCCTCAGTAGCTTTCGTGTATGCATCCAATGACCTTTGGA 97
* ** * * * * ** ** * ** *** ** *** * * *
consensus_10402#0 CATTTTCTTTTCGACTTGGAATG-TGGTTTCAAGAGTTGTTACGTCAAAAATGGTCTTCT 597
consensus_10402#1 CGACTTCAGCTCGAGTCTTATCACTGGCGACTTCAGC-GAGATACCGATTGTAGTCACCT 156
* *** **** * * *** * ** * * * * * *** **
consensus_10402#0 ACTTCATGGTCAAATGATGATGATAGTCTTCTACGTCCAATGGATGCTAAAGCAAGAAGT 657
consensus_10402#1 --TGCATTTTCAAGAAAAAAACTTTGCTTTCGTCGTTACTTTCCTGTACAAGTAGATAAT 214
* *** **** * * * * *** *** * ** *** * * *
consensus_10402#0 ACTACAAGTAAA--TTAGTATCACAAAGTTCACCACATGAAAGAGTTAATGGAGCTGTAA 715
consensus_10402#1 -CTTTGAGCAAAACCTAAAAACATTACTAATACTTCGCGTAAAGCTTACCAAAACC-TGA 272
** ** *** ** * ** * ** * * ** *** * * * *
consensus_10402#0 TTAGTTATTGGTTTTGTGAACTTGATCGAAGGAATAGAGGATCATTACAACAAGATGATT 775
consensus_10402#1 TCACAAATTGCATTCAACTCTTTTTCTATTTTAATACGGTACTCCT-CTGCAATTTGACT 331
* * **** ** ** **** * * * * *** *** *
consensus_10402#0 TGAACTATTTATATCAACTATTATTACCATCAACCCCATGTTTAGAAGTATTTATTAATC 835
consensus_10402#1 TTTCATATGGTCATTCGCCGCTTTCGTT-TCACTTCCGGATATCACTCTCCATGCTGATC 390
* *** ** * * * *** ** * * * * * ***
consensus_10402#0 GATGTTCCGGTTCTGGTGGTATATCATTTGATCAATGGCATAATTGTTTTGATATCCCAC 895
consensus_10402#1 T-TCTAGCACCTACGACATTTTTATATGCCACTGACAGTAAATTCCGTTCTTCGTTCCCT 449
* * * * * * * ** * * * * * * ** * **
consensus_10402#0 AAGAAGAACGTG--TTCAATGTAATGAATTCAAATAAAAAAAATTATAATCATGATTATT 953
consensus_10402#1 AAAGTCCCCGAAGCCTCGGTATAACGCTTC---ATAGCTGCAGCCATA-TCA-------- 497
** ** ** * *** * * *** * *** ***
consensus_10402#0 GAAATGGGGAATAGAAGACCGTATGTCCATTTGCAAACCAAAAAAAATGTAAAATTTATT 1013
consensus_10402#1 ------------------------------------------------------------
consensus_10402#0 GATTTTTAAAAAAATTAATAATAAATAATA 1043
consensus_10402#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||