These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1244 fasta sequence [GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAATGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGTTTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT-TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGGTGAATATTCTCTCTCAATGCCGCCTGTAACAACTAAACACAAGACAGATGGTAGCAATGCTTTGACAGAAGCAGCAAATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGACACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGTACTTACTCGGCTTCATTCGTTACAACGTGCCATCGCTTGCCTCAGTAAATACAGTTCATTGGATGGTGACATGTTACCAATTGCTGTTAAACTGGATCCCAGCGCCCACCGCCATAATATCTTCCACTGT] [+] EMBL CD098168 [GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACAAATGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACTAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTG ] [-] EMBL CD185818 [GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAATGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATT ] [-] EMBL CD185928 [GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAATGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATT ] [+] EMBL CD190056 [ AATATAGCGCCTCTCAATGTGTAGAAAGATTGATAATTGCTCCTCCAAGTGGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAGTGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAAAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGG CATGAATCTCT GCCATTGATCTAA GCAT ATTTTGG TTTACCCAGa ] [-] EMBL CD147839 [ TAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCC ] [-] EMBL CD147523 [ TAGAATCACAACTAGATTCTCTCCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCC ] [-] EMBL CD152770 [ TTCAGTCTGTACTTCANAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTAT ] [+] EMBL CD082408 [ tacgaggcGCCCATTTCGAAATTTGGAAAACTTGTAGACTTGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGTTTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTC AGTAACCAA ] [+] EMBL CD140343 [ TCTAAAACCACCGAATCTAT ATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGTTTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCNAACTTGATTTTT TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCCAAGTGCTCGCCAGCTG ] [+] EMBL CD198744 [ TACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGTTTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT TGTCTACAATACANAAAGAACCTGTGGATCCAGCTGCCGTGATTCANAGTG ] [-] EMBL CD062962 [ TCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGGTcta ] [-] EMBL CD153889 [ AGANAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGGTGAATATTCTCTCTCAATGCCGCCTGTAACAACTAAACACAAGACAGATGGTAGCAATGCTTTGACAGAAGCAGCAAATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGACACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGTACTTACTCGGCTTC ] [+] EMBL CD194810 [ AGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAAAATTGTCTAGCCAAACTTGATTTTTCTGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGG ] [+] EMBL CD190679 [ TGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGGTGAATATTCTCTCTCAATGTCGCCTGTAACAACTAAACACAAGACAGATGGTAGCAATGCTTTGACAGAAGCAGCAAATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGACACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGTACTTACTCGGCTTCATTCGTTACAACGTGCCATCGCTTGCCTCAGTAAATACAGTTCATTGGATGGTGACATGTTACCAATTGCTGTTAAACTGGATCCCAGCGCCCACCGCCATAATATCTTCCACTGT] [+] EMBL CD077753 [ tttCTGTGACACCAAAACACAAGACAGATGGTAGCAATGCTTTGACAGAAGCAGCATATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGACACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGAACggac ] consensusID : consensus_10403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [GTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACCGGTATCAAGCAACACACTGGCTTATTTGTATCGACTGTAAAGTCGAAATTGTCAGATTACAGGACAGCTCAGCCGTGATATCCACCTGCCCATGTCGAAATTTGGGACACCTGGTGAGACAAGAGAGTCCCAGACGCACTTTCTCATCTTAATAGCCTATTTCACAAATCACGAGAAGAAAGAATCTGAAACCACCTAATCTATAATAAAACCTGTTCTAAGAGACATCATCGTTATACAAAGATTCTGTGTCAACTGAAGCTCCAGATGATCTGTCGCGGTCGGTCATCATCTGAACACATACTTCGTGAAGACCATGAATCTCTGCCCAATTGATCCTAATGCATAATTTT] [-] EMBL CD098176 [GTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACCGGTATCAAGCAACACACTGGCTTATTTGTATCGACTGTAAAGTCGAAATTGTCAGATTACAGGACAGCTCAGCCGTGATATCCACCTGCCCATGTCGAAATTTGGGACACCTGGTGAGACAAGAGAGTCCCAGACGCACTTTCTCATCTTAATAGCCTATTTCACAAATCACGAGAAGAAAGAATCTGAAACCACCTAATCTATAATAAAACCTGTTCTAAGAGACATCATCGTTATACAAAGATTCTGTGTCAACTGAAGCTCCAGATGATCTGTCGCGGTCGGTCATCATCTGAACACATACTTCGTGAAGACCATGAATCTCTGCCCAATTGATCCTAATGCATAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10403#0 GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATA 60 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 TCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAATGCAGAAAGA 120 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 GGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTG 180 consensus_10403#1 ---------GTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTG 51 *************************************************** consensus_10403#0 ATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAAT 240 consensus_10403#1 ATAGTGATACCGGTATCAAGCAACACACTGGCTTATTTGTATCGACTGTAAAGTCGAAAT 111 ********** * ****************************** **************** consensus_10403#0 TGTCAGATTACATAAAAGCTCA-CCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAA 299 consensus_10403#1 TGTCAGATTACAGGACAGCTCAGCCGTGATATCCACCTGCCCATGTCGAAATTTGGGACA 171 ************ * ****** ********************* *********** * * consensus_10403#0 CTTGT--AGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATA-CCTATTTTACAAAT 356 consensus_10403#1 CCTGGTGAGACAAGAGAGTCCCAGACGCACTTTCTCATCTTAATAGCCTATTTCACAAAT 231 * ** ********* * **** ***************** ******* ****** consensus_10403#0 CACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAA-AGACATC 415 consensus_10403#1 CACGAGAAGAAAGAATCTGAAACCACCTAATCTATAATAAAACCTGTTCTAAGAGACATC 291 ****************** ******** ************************ ******* consensus_10403#0 ATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCAT 475 consensus_10403#1 ATCGTTATACAAAGATTCTGTGTCAACTGAAGCTCCAGATGATCTGTCGCGGTCGGTCAT 351 ******************* ******** ****************** ***** ****** consensus_10403#0 CATC-GAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCA-TTGATC-TAATGCATAA 532 consensus_10403#1 CATCTGAACACATACTTCGTGAAGACCATGAATCTCTGCCCAATTGATCCTAATGCATAA 411 **** ****** ************ ************* *** ****** ********** consensus_10403#0 TTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGT 592 consensus_10403#1 TTTT-------------------------------------------------------- 415 **** consensus_10403#0 TTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGA 652 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 GGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTTTGTC 712 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 TACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGT 772 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 TCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTAT 832 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 TGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAA 892 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 AATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGG 952 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 TGAATATTCTCTCTCAATGCCGCCTGTAACAACTAAACACAAGACAGATGGTAGCAATGC 1012 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 TTTGACAGAAGCAGCAAATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGA 1072 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 CACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGTACTTACTCGGCTTCATTC 1132 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 GTTACAACGTGCCATCGCTTGCCTCAGTAAATACAGTTCATTGGATGGTGACATGTTACC 1192 consensus_10403#1 ------------------------------------------------------------ consensus_10403#0 AATTGCTGTTAAACTGGATCCCAGCGCCCACCGCCATAATATCTTCCACTGT 1244 consensus_10403#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||