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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1244 fasta sequence
[GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAATGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGTTTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT-TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGGTGAATATTCTCTCTCAATGCCGCCTGTAACAACTAAACACAAGACAGATGGTAGCAATGCTTTGACAGAAGCAGCAAATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGACACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGTACTTACTCGGCTTCATTCGTTACAACGTGCCATCGCTTGCCTCAGTAAATACAGTTCATTGGATGGTGACATGTTACCAATTGCTGTTAAACTGGATCCCAGCGCCCACCGCCATAATATCTTCCACTGT]
[+] EMBL CD098168 [GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACAAATGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACTAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTG ]
[-] EMBL CD185818 [GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAATGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATT ]
[-] EMBL CD185928 [GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAATGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATT ]
[+] EMBL CD190056 [ AATATAGCGCCTCTCAATGTGTAGAAAGATTGATAATTGCTCCTCCAAGTGGGAAAATATCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAGTGCAGAAAGAGGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAAAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGG CATGAATCTCT GCCATTGATCTAA GCAT ATTTTGG TTTACCCAGa ]
[-] EMBL CD147839 [ TAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCC ]
[-] EMBL CD147523 [ TAGAATCACAACTAGATTCTCTCCAGTCTGTACTTCAAAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCC ]
[-] EMBL CD152770 [ TTCAGTCTGTACTTCANAATGCTGATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAATTGTCAGATTACATAAAAGCTCACCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAACTTGTAGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTAT ]
[+] EMBL CD082408 [ tacgaggcGCCCATTTCGAAATTTGGAAAACTTGTAGACTTGAGTTTTGTCGACGAACTTTCTCATCTTAATACCTATTTTACAAATCACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGTTTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTC AGTAACCAA ]
[+] EMBL CD140343 [ TCTAAAACCACCGAATCTAT ATAAAACCTGTTCTAAAGACATCATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGTTTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCNAACTTGATTTTT TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCCAAGTGCTCGCCAGCTG ]
[+] EMBL CD198744 [ TACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCATCATCGAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCATTGATCTAATGCATAATTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGTTTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT TGTCTACAATACANAAAGAACCTGTGGATCCAGCTGCCGTGATTCANAGTG ]
[-] EMBL CD062962 [ TCCAGCGAGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGGTcta ]
[-] EMBL CD153889 [ AGANAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTT TGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGGTGAATATTCTCTCTCAATGCCGCCTGTAACAACTAAACACAAGACAGATGGTAGCAATGCTTTGACAGAAGCAGCAAATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGACACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGTACTTACTCGGCTTC ]
[+] EMBL CD194810 [ AGAAAATGGTTATCAAATAATCGAGAGGAACTTGGAGACAAAGCAAAGCAGTTAGAAAATTGTCTAGCCAAACTTGATTTTTCTGTCTACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGTTCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGG ]
[+] EMBL CD190679 [ TGTTTTTATTGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAAAATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGGTGAATATTCTCTCTCAATGTCGCCTGTAACAACTAAACACAAGACAGATGGTAGCAATGCTTTGACAGAAGCAGCAAATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGACACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGTACTTACTCGGCTTCATTCGTTACAACGTGCCATCGCTTGCCTCAGTAAATACAGTTCATTGGATGGTGACATGTTACCAATTGCTGTTAAACTGGATCCCAGCGCCCACCGCCATAATATCTTCCACTGT]
[+] EMBL CD077753 [ tttCTGTGACACCAAAACACAAGACAGATGGTAGCAATGCTTTGACAGAAGCAGCATATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGACACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGAACggac ]
consensusID : consensus_10403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence
[GTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACCGGTATCAAGCAACACACTGGCTTATTTGTATCGACTGTAAAGTCGAAATTGTCAGATTACAGGACAGCTCAGCCGTGATATCCACCTGCCCATGTCGAAATTTGGGACACCTGGTGAGACAAGAGAGTCCCAGACGCACTTTCTCATCTTAATAGCCTATTTCACAAATCACGAGAAGAAAGAATCTGAAACCACCTAATCTATAATAAAACCTGTTCTAAGAGACATCATCGTTATACAAAGATTCTGTGTCAACTGAAGCTCCAGATGATCTGTCGCGGTCGGTCATCATCTGAACACATACTTCGTGAAGACCATGAATCTCTGCCCAATTGATCCTAATGCATAATTTT]
[-] EMBL CD098176 [GTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTGATAGTGATACCGGTATCAAGCAACACACTGGCTTATTTGTATCGACTGTAAAGTCGAAATTGTCAGATTACAGGACAGCTCAGCCGTGATATCCACCTGCCCATGTCGAAATTTGGGACACCTGGTGAGACAAGAGAGTCCCAGACGCACTTTCTCATCTTAATAGCCTATTTCACAAATCACGAGAAGAAAGAATCTGAAACCACCTAATCTATAATAAAACCTGTTCTAAGAGACATCATCGTTATACAAAGATTCTGTGTCAACTGAAGCTCCAGATGATCTGTCGCGGTCGGTCATCATCTGAACACATACTTCGTGAAGACCATGAATCTCTGCCCAATTGATCCTAATGCATAATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10403#0 GAATATAGCGCCTCTCAATGTGTAGTAAGATTGATAATTGCTCCTCCAAGTTGGAAAATA 60
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 TCGACGGTGAACTGTCAAAGATAGAAGAAAAATTAGCAAACTTTGACGAATGCAGAAAGA 120
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 GGACATTTAGTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTG 180
consensus_10403#1 ---------GTTTACTAGAATCACAACTAGATTCTCTTCAGTCTGTACTTCAAAATGCTG 51
***************************************************
consensus_10403#0 ATAGTGATACGGATATCAAGCAACACACTGGCTTATTTGTATCAACTGTAAAGTCGAAAT 240
consensus_10403#1 ATAGTGATACCGGTATCAAGCAACACACTGGCTTATTTGTATCGACTGTAAAGTCGAAAT 111
********** * ****************************** ****************
consensus_10403#0 TGTCAGATTACATAAAAGCTCA-CCGTGATATCCACCTGCCCATTTCGAAATTTGGAAAA 299
consensus_10403#1 TGTCAGATTACAGGACAGCTCAGCCGTGATATCCACCTGCCCATGTCGAAATTTGGGACA 171
************ * ****** ********************* *********** * *
consensus_10403#0 CTTGT--AGACAAGAGTTTTGTCGACGAACTTTCTCATCTTAATA-CCTATTTTACAAAT 356
consensus_10403#1 CCTGGTGAGACAAGAGAGTCCCAGACGCACTTTCTCATCTTAATAGCCTATTTCACAAAT 231
* ** ********* * **** ***************** ******* ******
consensus_10403#0 CACGAGAAGAAAGAATCTAAAACCACCAAATCTATAATAAAACCTGTTCTAA-AGACATC 415
consensus_10403#1 CACGAGAAGAAAGAATCTGAAACCACCTAATCTATAATAAAACCTGTTCTAAGAGACATC 291
****************** ******** ************************ *******
consensus_10403#0 ATCGTTATACAAAGATTCTCTGTCAACTAAAGCTCCAGATGATCTGTTGCGGTTGGTCAT 475
consensus_10403#1 ATCGTTATACAAAGATTCTGTGTCAACTGAAGCTCCAGATGATCTGTCGCGGTCGGTCAT 351
******************* ******** ****************** ***** ******
consensus_10403#0 CATC-GAACACTTACTTCGTGAAGGCCATGAATCTCTGGCCA-TTGATC-TAATGCATAA 532
consensus_10403#1 CATCTGAACACATACTTCGTGAAGACCATGAATCTCTGCCCAATTGATCCTAATGCATAA 411
**** ****** ************ ************* *** ****** **********
consensus_10403#0 TTTTGGTTTTACTCAGGAAGATATAGGATTAGAAAAGTTTAAGGAGCTAAGTGATCTGGT 592
consensus_10403#1 TTTT-------------------------------------------------------- 415
****
consensus_10403#0 TTCATCTACACAACGAGGAGAGCTGGATCCAGCGAGAAAATGGTTATCAAATAATCGAGA 652
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 GGAACTTGGAGACAAAGCAAAGCAGTTAGAATATTGTCTAGCCAAACTTGATTTTTTGTC 712
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 TACAATACAAAAAGAACCTGTGGATCCAGCTGCCGTGATTCAAAGTGCTCGCCAGCTGGT 772
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 TCCTTTTGCATCTGATTACTCGTCAGATTTTGAACATCTTATGGGGAGTCTTGTTTTTAT 832
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 TGGACGTAGCCTAGAGGATACTCCGTATGCTGACTTGGCCCTGCCAACCAGCCCCACAAA 892
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 AATGTCTTCTGAAAGCTCTCAAGTAACCAAGACTTCTGAAGATGTTTGTATAATGGATGG 952
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 TGAATATTCTCTCTCAATGCCGCCTGTAACAACTAAACACAAGACAGATGGTAGCAATGC 1012
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 TTTGACAGAAGCAGCAAATTTGTTTAAGGCCTCTTGCTGTTATCATTTAAATTTATCAGA 1072
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 CACTGATCCACTACTCACTGCGTTTTCCTCCGGATGTCGTGTACTTACTCGGCTTCATTC 1132
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 GTTACAACGTGCCATCGCTTGCCTCAGTAAATACAGTTCATTGGATGGTGACATGTTACC 1192
consensus_10403#1 ------------------------------------------------------------
consensus_10403#0 AATTGCTGTTAAACTGGATCCCAGCGCCCACCGCCATAATATCTTCCACTGT 1244
consensus_10403#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||