Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10414 cluster # 10414       Sequences # 16       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10414#0 length = 1938 sequences # 14  
 consensus_10414#1 length = 630 sequences # 1  
consensus_10414#2 length = 385 sequences # 1  
consensusID : consensus_10414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1938
fasta sequence 
                              [CACGGCATAAATTTGTACTTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAGGATGACCAGGAGCAGGAGGCCTGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAGTCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGTATTCAGCCCAAGCTGCACTGTAAT-CAGGTTGGCCGGTG-T-ATGGGTT-ATATGTAGGAGCCGGCATGGCGGCG-GCCGCAACGGCACTTTGGGCACAGTTGGCCATGGTCCATGGATCTTATGGCTTGTTCTATCTCTTGTCTGTTACCACGGACATTAAATATTTTGATAGAGGGGTCCGGTGGTGGCTCCTTTGATATTTCGACATGGGCTCCACTGACGCGACAAATCTCTTTAATGGACTCGCCACCTTTGCCGATTACAAGTCCTGCCTTTTCAGCCGGAACGGCATATTGGGATGTTTCTTGGCCGTCGTATCCATAGTGCATTGAACCTCCAGGACGATCTCTAGAATTTATAAGGACAAGAACAGCTTGTCGAGCTTTTTCCACTCGTGCCGGCTCGCCGGATATTCTTAGCGGTTTGTCTTCAGGAGTCGGGTTGTTTGATTGTTGGATTAGCACCATCTTGACGCCATTCTCTTCTTGCAGATTCTTGATAGTCTCACCGTTCTTGCCAATCACTAAACCAGCCTTTNAACCAGGAACCATCATCTCAATGGTTGTTATGCTTCCAGTTGAATTATANGCAGGGGTAGTTGGTGTGCCGTTTTTCCCGGCACGCTCAATTATGTCACCAATCATTTGTTTCGCATGATCAATTTGCTGCGGAGTTCCAGTTAGGGTAACAGTACGCTCGGGAGTACCAGCTTTGGTTGGTTCTCATAGTCCTGATCAAACTCCCATGCAACCTTCTCAGGCGTTAGCTTTAGCGCAATTACTTATTGCTCGAGGAGTTGGGTTGGGTAGTATCAACACAGAAACGCCTGCTTCTAATGGGTTGCTCACTTCTAAGAAGGATAAACCTTCTGATAACGAATGCATTGCCAATTCATCGATCCTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCTACACTAAATCAAAATGCATCTCATTGCAGTGAAGGGCGATTCAATCCAGTACCGCTTAACAAGGTATCTAGTGAGTTATCTTATGGGAAAAACTGTGGGAACGACTCATCAGATAATACTTCTACTGTCAGTCAAAATCATCATAACTGTCGTCCAAATTACTTAGACAAGCCTCAATCTACGCCTTCTAAGCCGTCGACTAGTCCTCGACCGACTAATGTTAAGTCTAAAATACAACCAGATTCAACGTTATCTGAACCTATCCAGTCAATTTCTTCAGATGGATATAACCGAACTCAGCAAAATGGCCGAGGCCCCAAAAATACTGAGGTTTGTTCTGGGGGTTCTGTGCGCAGTACAGAGCAGAAACAGACTGCAGTTAGTTCATCTCGAACAGGGTCAACAAATCAAAGCAGAGTTAAGGGGTCTAAATCAAATAATGTCCGATCACCTACAAAGGTAGTCGTTCAGAATAATTCCTTATCATCCCAAATATCCTCTAGCGGGAATATTCGTCCTATGGAAGCAGCTTGCACCCCAGTTGCA]

[+] EMBL CD169329             [CACGGCATAAATTTGTACTTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAGGATGACCAGGAGCAGGAGGCCTGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAGTCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCTTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGTATTCAGCCCAAGCTGCACTGTAAT CAGGTTGGCCGGTG T ATGGGTT ATATGTAGGAGCCGGCATGGCGGCG GCCGCAACGGCACTTTGGGCACAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD169307             [CACGGCATAAATTTGTACTTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAGGATGACCAGGAGCAGGAGGCCTGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAGTCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGTATTCAGCCCAAGCTGCACTGTAAT CAGGTTGGCCGGTG T ATGGGTT ATATGTAGGAGCCGGCATGGCGGCG GCCGCAACGGCACTTTGGGCACAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD169298             [CACGGCATAAATTTGTACTTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAGGATGACCAGGAGCAGGAGGCCTGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAGTCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGTATTCAGCCCAAGCTGCACTGTAAT CAGGTTGGCCGGTG T ATGGGTT ATATGTAGGAGCCGGCATGGCGGCG GCCGCAACGGCACTTTGGGCACAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD169485             [               TACTTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAGGATGACCAGGAGCAGGAGGCATGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAGTCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGTATTCAGCCCAAGCTGCACTGTAAT CAGGTTGGCCGGTG T ATGGGTT ATATGTAGGAGCCGGCATGGCGGCG GCCGCAACGGCACTTTGGGCACAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD097006             [                 CTTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAGGATGACCAGGAGCAGGAGGCATGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAGTCTGTCCCGGAGGAGCTCCAGCAGGGGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD097045             [                  TTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAGGATGACCAGGAGCAGGAGGCATGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAGTCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTCGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCCGTCTTAAAATGGCATCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD178028             [                                                                                                 TATTGATTGTGTGCCTGGCATAGTCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGTATTCAGCCCAAGCTGCACTGTAAT CAGGTTGGCCGGTG T ATGGGTT ATATGTAGGAGCCGGCATGGCGGCG GCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL SMT14383             [                                                                                                                                                       ACCTGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCANTCATGCATACCTTGACGTCTGTAGTATTCAGCCCAAGCTGCACTGTAAT CAGGTTGGCCGGTGNA ATGGGTTGATAat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AI018836             [                                                                                                                                                          TGGTGCGCCTGTTTGCTGTTGTTGCCACGCTTGCCAAGCTTGCCANTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGGTAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATTGCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGGGTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCANTCATGCATACCTTGACGTCTGTAGTANTCAGCCCAAGCTGCACTGTAATGCAGGTTGGCCGGTG TAATGGGTT A ATGatg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD179459             [                                                                                                                                                                                                                                                                                                                                                                                     TCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGTATTCAGCCCAAGCTGCACTGTAAT CAGGTTGGCCGGTG T ATGGGTT ATATGTAGGAGCCGGCATGGCGGCG GCCGCAACGGCACTTTGGGCACAGTTGGCCATGGTCCATGGATCTTATGGCTTGTTCTATCTCTTGTCTGTTACCACGGACATTAAATATTTTGATAGAGGGGTCCGGTGGTGGCTCCTTTGATATTTCGACATGGGCTCCACTGACGCGACAAATCTCTTTAATGGACTCGCCACCTTTGCCGATTACAAGTCCTGCCTTTTCAGCCGGAACGGCATATTGGGATGTTTCTTGGCCGTCGTATCCATAGTGCATTGAACCTCCAGGACGATCTCTAGAATTTATAAGGACAAGAACAGCTTGTCGAGCTTTTTCCACTCGTGCCGGCTCGCCGGATATTCTTAGCGGTTTGTCTTCAGGAGTCGGGTTGTTTGATTGTTGGATTAGCACCATCTTGACGCCATTCTCTTCTTGCAGATTCTTGATAGTCTCACCGTTCTTGCCAATCACTAAACCAGCCTTTNAACCAGGAACCATCATCTCAATGGTTGTTATGCTTCCAGTTGAATTATANGCAGGGGTAGTTGGTGTGCCGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD200506             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAACCGGCATGGCGACGAGCCGCATCGGCTCTTTGGGCACAGTTGGCCATGGTCCATGGATCTTATGGCTTGTTCTATCTCTTGTCTGTTACCACGGACATTAAATATTTTGATAGAGGGGTCCGGTGGTGGCTCCTTTGATATTTCGACATGGGCTCCACTGACGCGACAAATCTCTTTAATGGACTCGCCACCTTTGCCAATTACAAGTCCTGCCTTTTCAGCCGGAACGGCATATTGGGATGTTTCTTGGCCGTCGTATCCATAGTGCATTGAACCTCCAGGACGATCTCTAGAATTTATAAGGACAAGAACAGCTTGTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD161580             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGTTTGATTGTTGGATTAGCACCATCTTGACGCCATTCTCTTCTTGCAGATTCTTGATAGTCTCACCGTTCTTGCCAATCACTAAACCAGCCTTTAAACCAGGAACCATCATCTCAATGGTTGTTATGCTTCCAGTTGAATTATAGGCAGGGGTAGTTGGTGTGCCGTTTTTCCCGGCACGCTCAATTATGTCACCAATCATTTGTTTCGCATGATCAATTTGCTGCGGAGTTCCAGTTAGGGTAACAGTACGCTCGGGAGTACCAGCTTTGGTTGGTTCTCATAGTCCTGATCAAACTCCCATGCAACCTTCTCAGGCGTTAGCTTTAGCGCAATTACTTATTGCTCGAGGAGTTGGGTTGGGTAGTATCAACACAGAAACGCCTGCTTCTAATGGGTTGCTCACTTCTAAGAAGGATAAACCTTCTGATAACGAATGCATTGCCAATTCATCGATCCTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCTACACTAAATCAAAATGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD123715             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTACCAACACAGAAACGCCTGCTTCTAATGGTTTGCTCACTTCTAAGAAGGATAAACCTTCTGATAACGAATGCATTGCCAATTCATCGATCTTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCTACACTAAATCAAAATGCATCTCATTGCAGTGAAGGGCGATTCAATCCAGTACCGCTTAACAAGGTATCTAGTGAGTTATCTTATGGGAAAAACTGTGGGAACGACTCATCAGATAATACTTCTACTGTCAGTCAAAATCATCATAACTGTCGTCCAAATTACTTAGACAAGCCTCAATCTACGCCTTCTAAGCCGTCGACTAGTCCTCGACCGACTAATGTTAAGTCTAAAATACAACCAGATTCAACGTTATCTGAACCTATCCAGTCAATTTCTTCAGATGGATATAACCGAACTCAGCAAAATGGCCGAGGCCCCAAAAATACTGAGGTTTGTTCTGGGGGTTCTGTGCGCAGTACAGAGCAGAAACAGACTGCAGTTAGTTCATCTCGAACAGGGTCAACAAATCAAAGCAGAGTTAAGGGGTCTAAATCAAATAATGTCCGATCACCTACAAAGGT                                                                                     ]
[+] EMBL CD192927             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCTTCTAAGCCGTCGACTAGTCCTCGACCGACTAATGTTAAGTCTAAAATACAACCAGATTCAACATTATCTGAACCTATCCAGTCAATTTCTTCAGATGGATATAACCGAACTCAGCAAAATGGCCGAGGCCCCAAAAATACTGAGGTTTGTTCTGGGGGTTCTGTGCGCAGTACAGAGCAGAAACAGACTGCAGTTAGTTCATCTCGAACAGGGTCAACAAATCAAAGCAGAGTTAAGGGGTCTAAATCAAATAATGTCCGATCACCTACAAAGGTAGTCGTTCAGAATAATTCCTTATCATCCCAAATATCCTCTAGCGGGAATATTCGTCCTATGGAAGCAGCTTGCACCCCAGTTGCA]




>consensus_10414#0
CACGGCATAAATTTGTACTTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAG
GATGACCAGGAGCAGGAGGCCTGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAG
TCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCC
ACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGG
TAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATT
GCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGG
GTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGT
ATTCAGCCCAAGCTGCACTGTAATCAGGTTGGCCGGTGTATGGGTTATATGTAGGAGCCG
GCATGGCGGCGGCCGCAACGGCACTTTGGGCACAGTTGGCCATGGTCCATGGATCTTATG
GCTTGTTCTATCTCTTGTCTGTTACCACGGACATTAAATATTTTGATAGAGGGGTCCGGT
GGTGGCTCCTTTGATATTTCGACATGGGCTCCACTGACGCGACAAATCTCTTTAATGGAC
TCGCCACCTTTGCCGATTACAAGTCCTGCCTTTTCAGCCGGAACGGCATATTGGGATGTT
TCTTGGCCGTCGTATCCATAGTGCATTGAACCTCCAGGACGATCTCTAGAATTTATAAGG
ACAAGAACAGCTTGTCGAGCTTTTTCCACTCGTGCCGGCTCGCCGGATATTCTTAGCGGT
TTGTCTTCAGGAGTCGGGTTGTTTGATTGTTGGATTAGCACCATCTTGACGCCATTCTCT
TCTTGCAGATTCTTGATAGTCTCACCGTTCTTGCCAATCACTAAACCAGCCTTTNAACCA
GGAACCATCATCTCAATGGTTGTTATGCTTCCAGTTGAATTATANGCAGGGGTAGTTGGT
GTGCCGTTTTTCCCGGCACGCTCAATTATGTCACCAATCATTTGTTTCGCATGATCAATT
TGCTGCGGAGTTCCAGTTAGGGTAACAGTACGCTCGGGAGTACCAGCTTTGGTTGGTTCT
CATAGTCCTGATCAAACTCCCATGCAACCTTCTCAGGCGTTAGCTTTAGCGCAATTACTT
ATTGCTCGAGGAGTTGGGTTGGGTAGTATCAACACAGAAACGCCTGCTTCTAATGGGTTG
CTCACTTCTAAGAAGGATAAACCTTCTGATAACGAATGCATTGCCAATTCATCGATCCTC
CATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCT
TCTCTTGGTTCTACACTAAATCAAAATGCATCTCATTGCAGTGAAGGGCGATTCAATCCA
GTACCGCTTAACAAGGTATCTAGTGAGTTATCTTATGGGAAAAACTGTGGGAACGACTCA
TCAGATAATACTTCTACTGTCAGTCAAAATCATCATAACTGTCGTCCAAATTACTTAGAC
AAGCCTCAATCTACGCCTTCTAAGCCGTCGACTAGTCCTCGACCGACTAATGTTAAGTCT
AAAATACAACCAGATTCAACGTTATCTGAACCTATCCAGTCAATTTCTTCAGATGGATAT
AACCGAACTCAGCAAAATGGCCGAGGCCCCAAAAATACTGAGGTTTGTTCTGGGGGTTCT
GTGCGCAGTACAGAGCAGAAACAGACTGCAGTTAGTTCATCTCGAACAGGGTCAACAAAT
CAAAGCAGAGTTAAGGGGTCTAAATCAAATAATGTCCGATCACCTACAAAGGTAGTCGTT
CAGAATAATTCCTTATCATCCCAAATATCCTCTAGCGGGAATATTCGTCCTATGGAAGCA
GCTTGCACCCCAGTTGCA

consensusID : consensus_10414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence 
                              [ACGCCCTGCCTCTAATGGTTTGCTCACTTCTAGGAAGGATAAACCTTCTGATAACGAATGCATGNCCAATTCATCGATCTTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCCGCACTAAATCAAAATGCATCTCATTGTAGTGAAGGGCGATTCAATCCAGTACCGCTTAACAAGGTATCTAGTGAGTTATCTTATGGGAAAAACTGTGGGAACGACTCACCAGACTTCTACTCCAATGCAGCAGCTCGCAGAAACAGCACAATTGGCGGCTCAGCTCGCAGCTTTGGTTGGTTCTCATAGTCCTGATCAAACTCCCATGCAACCTTCTCAGGCGTTAGCTTTAGCGCAATTACTTATTGCTCGAGGAGTTGGGTTGGGTAGTATCAACACAGAAACGCCTGCTTCTAATGGTTTGCTCACTTCTAAGAAGGATAAACCTTCTGATAACGAATGCATTGCCAATTCATCGATCTTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCTACACTAAATCAAAATGCATCTCATTGTAGTGAAGGGCGAT]

[-] EMBL CD114521             [ACGCCCTGCCTCTAATGGTTTGCTCACTTCTAGGAAGGATAAACCTTCTGATAACGAATGCATGNCCAATTCATCGATCTTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCCGCACTAAATCAAAATGCATCTCATTGTAGTGAAGGGCGATTCAATCCAGTACCGCTTAACAAGGTATCTAGTGAGTTATCTTATGGGAAAAACTGTGGGAACGACTCACCAGACTTCTACTCCAATGCAGCAGCTCGCAGAAACAGCACAATTGGCGGCTCAGCTCGCAGCTTTGGTTGGTTCTCATAGTCCTGATCAAACTCCCATGCAACCTTCTCAGGCGTTAGCTTTAGCGCAATTACTTATTGCTCGAGGAGTTGGGTTGGGTAGTATCAACACAGAAACGCCTGCTTCTAATGGTTTGCTCACTTCTAAGAAGGATAAACCTTCTGATAACGAATGCATTGCCAATTCATCGATCTTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCTACACTAAATCAAAATGCATCTCATTGTAGTGAAGGGCGAT]




>consensus_10414#1
ACGCCCTGCCTCTAATGGTTTGCTCACTTCTAGGAAGGATAAACCTTCTGATAACGAATG
CATGNCCAATTCATCGATCTTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCA
AGAATCTCAGGCACAATGGCCTTCTCTTGGTTCCGCACTAAATCAAAATGCATCTCATTG
TAGTGAAGGGCGATTCAATCCAGTACCGCTTAACAAGGTATCTAGTGAGTTATCTTATGG
GAAAAACTGTGGGAACGACTCACCAGACTTCTACTCCAATGCAGCAGCTCGCAGAAACAG
CACAATTGGCGGCTCAGCTCGCAGCTTTGGTTGGTTCTCATAGTCCTGATCAAACTCCCA
TGCAACCTTCTCAGGCGTTAGCTTTAGCGCAATTACTTATTGCTCGAGGAGTTGGGTTGG
GTAGTATCAACACAGAAACGCCTGCTTCTAATGGTTTGCTCACTTCTAAGAAGGATAAAC
CTTCTGATAACGAATGCATTGCCAATTCATCGATCTTCCATACTTCGGAAATCAGTGCTG
TAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCTACACTAAATC
AAAATGCATCTCATTGTAGTGAAGGGCGAT

consensusID : consensus_10414#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence 
                              [GACTTCAAAACTAATGTCATATGTACTAAGAGTTGATTGTTTCAGAATTCAACATAGAATACTGTTATATCTAGAGCTTTGATTCTTAATATGCCGCATACTACTAGACTACTTGAACGATCGAACCCGCAACGTCGCAAGAGAGAAGACAGAAGACTAGTAAGTAGGAACTTTATTCCCCAAAACAGTGTCAAAATATGATACAGAAATCTCATGTATTTATAGTTTTTGACTGAGAGTAAATCATCATTTCAGACAACCAATAGGCACATAGGGGGTCATTCATATCCATCCAATGGGGAAACTACATGTCGACATTCTAGAATATTTCCCTAGCAGTGATTGGACGGAATGTCTTCAGCTCTTTCTGGCCTTCTTGAAGCTT]

[+] EMBL CD116717             [GACTTCAAAACTAATGTCATATGTACTAAGAGTTGATTGTTTCAGAATTCAACATAGAATACTGTTATATCTAGAGCTTTGATTCTTAATATGCCGCATACTACTAGACTACTTGAACGATCGAACCCGCAACGTCGCAAGAGAGAAGACAGAAGACTAGTAAGTAGGAACTTTATTCCCCAAAACAGTGTCAAAATATGATACAGAAATCTCATGTATTTATAGTTTTTGACTGAGAGTAAATCATCATTTCAGACAACCAATAGGCACATAGGGGGTCATTCATATCCATCCAATGGGGAAACTACATGTCGACATTCTAGAATATTTCCCTAGCAGTGATTGGACGGAATGTCTTCAGCTCTTTCTGGCCTTCTTGAAGCTT]




>consensus_10414#2
GACTTCAAAACTAATGTCATATGTACTAAGAGTTGATTGTTTCAGAATTCAACATAGAAT
ACTGTTATATCTAGAGCTTTGATTCTTAATATGCCGCATACTACTAGACTACTTGAACGA
TCGAACCCGCAACGTCGCAAGAGAGAAGACAGAAGACTAGTAAGTAGGAACTTTATTCCC
CAAAACAGTGTCAAAATATGATACAGAAATCTCATGTATTTATAGTTTTTGACTGAGAGT
AAATCATCATTTCAGACAACCAATAGGCACATAGGGGGTCATTCATATCCATCCAATGGG
GAAACTACATGTCGACATTCTAGAATATTTCCCTAGCAGTGATTGGACGGAATGTCTTCA
GCTCTTTCTGGCCTTCTTGAAGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10414#0      CACGGCATAAATTTGTACTTCGGAAAAAGGGGGGCAATGTTTATTGTTGAGGAATAGGAG 60
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      GATGACCAGGAGCAGGAGGCCTGCTAGGAGCACATTGTATTGATTGTGTGCCTGGCATAG 120
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      TCTGTCCCGGAGGAGCTCCAGCACCAGGTTGACCTGGTGCGCCTGTTTGCTGTTGTTGCC 180
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      ACGCTTGCCAAGCTTGCCATTGTTGCCATTGCTGCCACTGAGCGTAATCGTACTGTCCGG 240
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      TAGCCGTTGGTTGTGCTTGAACAGGAACTTGAGAGGGTGCAGCTGCCGGTGTACCAGATT 300
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      GCGCAGCCTGCACATGGCCTGTTGGCACTGGGGCCGTCTGTTGAACGGCAGCCACTGAGG 360
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      GTTGTTGAGCCTGTCTTAAAATGGCATCGGCGCATTCATGCATACCTTGACGTCTGTAGT 420
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      ATTCAGCCCAAGCTGCACTGTAATCAGGTTGGCCGGTGTATGGGTTATATGTAGGAGCCG 480
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      GCATGGCGGCGGCCGCAACGGCACTTTGGGCACAGTTGGCCATGGTCCATGGATCTTATG 540
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      GCTTGTTCTATCTCTTGTCTGTTACCACGGACATTAAATATTTTGATAGAGGGGTCCGGT 600
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      GGTGGCTCCTTTGATATTTCGACATGGGCTCCACTGACGCGACAAATCTCTTTAATGGAC 660
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      TCGCCACCTTTGCCGATTACAAGTCCTGCCTTTTCAGCCGGAACGGCATATTGGGATGTT 720
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      TCTTGGCCGTCGTATCCATAGTGCATTGAACCTCCAGGACGATCTCTAGAATTTATAAGG 780
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      ACAAGAACAGCTTGTCGAGCTTTTTCCACTCGTGCCGGCTCGCCGGATATTCTTAGCGGT 840
consensus_10414#1      --------------------ACGCCCTGCCTCTAATGGTTTGCTCACTTCTAGGAAGGAT 40
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      TTGTCTTCAGGAGTCGGGT---TGTTTGATTGTTGGATTAGCACCATCTTGACG--CCAT 895
consensus_10414#1      AAACCTTCTGATAACGAATGCATGNCCAATTCATCGATCTTCCATACTTCGGAAATCAGT 100
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      TCTCTTCTTGCAGATTCTTGATAGTCTCACCGTTCTTGCCAATCACTAAACCAGCCTTTN 955
consensus_10414#1      GCTGTAAACGAACGACGTCAAGAATCTCAGGCACAATGGCCTTCTCTTGGTTCCGCACTA 160
consensus_10414#2      -----------------------------------------------------GACTTCA 7
                                                                              *    

consensus_10414#0      AACCAGGAACCAT-CATCTCAATGGTTGTTATGCTTCCAGTTGAATTATANGCAG--GGG 1012
consensus_10414#1      AATCAAAATGCAT-C-TCATTGTAGTGAAGGGCGATTCAATCCAGTACCGCTTAACAAGG 218
consensus_10414#2      AAACTAATGTCATATGTACTAAGAGTTGATTGTTTCAGAATTCAACATAGAATACTGTTA 67
                       ** *      ***   *       **            * *  *         *      

consensus_10414#0      TAGTTGGTGTGCCGTTTTTCCCGGCACGCTC---AATTATGTCACCAATCATTTGTTTCG 1069
consensus_10414#1      TATCTAGTGAGTTATCTTATGGGAAAAACTGTGGGAACGACTCACCAGACTTCTACTCCA 278
consensus_10414#2      TATCTAGAGCTTTGATTCTT--AATATGCCG------CATACTACTAGAC---TACTT-G 115
                       **  * * *       *        *  *              ** *  *   *  *   

consensus_10414#0      CATGATCAATTTGCTGCGGAGTTCCAGTTAGGGTAACAGTACGCTCGGGAGTACCAGCTT 1129
consensus_10414#1      ATGCAGCAGCTCGCAGAAACAGCACAATTGGCGGCTCAGCTCGC-----------AGCTT 327
consensus_10414#2      AACGATCGAAC--CCGCAACGTCGCAAGAGAGAAGACAGAAGACTAGTAAGTAGGAACTT 173
                           * *      * *        **          ***    *           * ***

consensus_10414#0      TGGTTGGTTCTCATAGTCCTGATCAAACTCCCATGCAACCTTCTCAGGCGTTAGCTTTAG 1189
consensus_10414#1      TGGTTGGTTCTCATAGTCCTGATCAAACTCCCATGCAACCTTCTCAGGCGTTAGCTTTAG 387
consensus_10414#2      TA-----TTCCCCAAAACAGTGTCAAAATATGATACAGAAATCTCATGTATTTA------ 222
                       *      *** *  *  *    ***** *   ** **    ***** *  **        

consensus_10414#0      CGCAATTACTTATTGCTCGAGGAGTTGGGTTGGGTAGTATCAACACAGAAACGCCTGCTT 1249
consensus_10414#1      CGCAATTACTTATTGCTCGAGGAGTTGGGTTGGGTAGTATCAACACAGAAACGCCTGCTT 447
consensus_10414#2      ------TAGTTTTTGACTGAGAG--TAAATC--ATCATTTCAGACAACCAATA--GGCAC 270
                             ** ** ***   ***    *   *    *  * ***    *  **     **  

consensus_10414#0      CTAATGGGTTGCTCACTTCTAAGAAGGATAAACCTTCTGATAACGAATGCATTGCCAATT 1309
consensus_10414#1      CTAATGGTTTGCTCACTTCTAAGAAGGATAAACCTTCTGATAACGAATGCATTGCCAATT 507
consensus_10414#2      ATAGGGGGTCATTCATATCCA--------------TCCAATGGGGAAACTA----CATGT 312
                        **  ** *   ***  ** *              **  **   ***   *    **  *

consensus_10414#0      CATCGATCCTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGG 1369
consensus_10414#1      CATCGATCTTCCATACTTCGGAAATCAGTGCTGTAAACGAACGACGTCAAGAATCTCAGG 567
consensus_10414#2      CGACATTCTAGAATATTTCCCTAG-CAGTGATTGGACGGAATGTCTTCAGCTCTTTC--- 368
                       *  *  **    *** ***   *  ***** *   *  *** * * ***    * **   

consensus_10414#0      CACAATGGCCTTCTCTTGGTTCTACACTAAATCAAAATGCATCTCATTGCAGTGAAGGGC 1429
consensus_10414#1      CACAATGGCCTTCTCTTGGTTCTACACTAAATCAAAATGCATCTCATTGTAGTGAAGGGC 627
consensus_10414#2      -----TGGCCTTCTTGAAGCTT-------------------------------------- 385
                            *********    * *                                       

consensus_10414#0      GATTCAATCCAGTACCGCTTAACAAGGTATCTAGTGAGTTATCTTATGGGAAAAACTGTG 1489
consensus_10414#1      GAT--------------------------------------------------------- 630
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      GGAACGACTCATCAGATAATACTTCTACTGTCAGTCAAAATCATCATAACTGTCGTCCAA 1549
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      ATTACTTAGACAAGCCTCAATCTACGCCTTCTAAGCCGTCGACTAGTCCTCGACCGACTA 1609
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      ATGTTAAGTCTAAAATACAACCAGATTCAACGTTATCTGAACCTATCCAGTCAATTTCTT 1669
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      CAGATGGATATAACCGAACTCAGCAAAATGGCCGAGGCCCCAAAAATACTGAGGTTTGTT 1729
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      CTGGGGGTTCTGTGCGCAGTACAGAGCAGAAACAGACTGCAGTTAGTTCATCTCGAACAG 1789
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      GGTCAACAAATCAAAGCAGAGTTAAGGGGTCTAAATCAAATAATGTCCGATCACCTACAA 1849
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      AGGTAGTCGTTCAGAATAATTCCTTATCATCCCAAATATCCTCTAGCGGGAATATTCGTC 1909
consensus_10414#1      ------------------------------------------------------------
consensus_10414#2      ------------------------------------------------------------
                                                                                   

consensus_10414#0      CTATGGAAGCAGCTTGCACCCCAGTTGCA 1938
consensus_10414#1      -----------------------------
consensus_10414#2      -----------------------------


Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)