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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 960 fasta sequence
[AGATGAACAATTATACTGGACAATATGGATACATGTTTCCGATGCAACCAAACTATGCTTGGGGTCCGAACCAAGCGCACACACCTGTTCAAGAGCCACAATATACCTATGGTTATGACTCGAATAACCATCAGCCCCCTCCGTACACTGACTATATGGGACCTCAGGCACAAGATTATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGAGAATCTTTGGTCATCCGCGCATTTATGTGTTGGATTATTGTGTCCTTCCA]
[-] EMBL CD146691 [AGATGAACAATTATACTGGACAATATGGATACATGTTTCCGATGCAACCAAACTATGCTTGGGGTCCGAACCAAGCGCACACACCTGTTCAAGAGCCACAATATACCTATGGTTATGACTCGAATAACCATCAGCCCCCTCCGTACACTGACTATATGGGACCTCAGGCACAAGATTATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTT ]
[+] EMBL CD070040 [ ACTATATGGGA CTCAGGCACAAGATTATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACA ]
[-] EMBL CD095246 [ ATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGA ]
[-] EMBL CD094854 [ ATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGA ]
[+] EMBL CD163219 [ CAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGACAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGA ]
[+] EMBL AI975101 [ CGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGANAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTT ]
[-] EMBL CD131653 [ TCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAGAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAGTAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCAT ]
[-] EMBL CD096997 [ CGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGATGATTGCAAACGATCATTTCAAAG ]
[-] EMBL CD097026 [ CGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTCCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAAT ]
[-] EMBL CD178617 [ GGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAACGATCCATTGGGTTCATTCACATTATATATGAATAAAGAGAATCTTTGGTCATCCGCGCATTTATGTGTTGGATTATTGTGTCCTTCCA]
[+] EMBL CD178395 [ AAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTATAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGAGAATCTTTGGTCATCCGCGCATTTATGTGTTGG ]
[-] EMBL CD130770 [ ATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCT AAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAA ]
[-] EMBL CD184386 [ AGACCAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGTCTTTTAAGAGCACAACTGAAAAAGACACCGGAAGA ]
consensusID : consensus_10419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 633 fasta sequence
[TCTGATCGTACCAGAAATGAATCAGGCGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGACTGCTCTGTTCCATATGGGAACTATGGAGACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGAAACATTTAATCTCTCAAGAACCAAATCCAGTTGGCGAGGAATTTATTCAGGGGCAAGTATACAATACCAGAGATTTGGAATATAGCTGTTCACTTTGTAAAGCGGATTTAGTTGGAGCTGATGATATTGAAAATCATCTACGTACTCTTACACATCAAAAGAAATATAAAGAGAAATTTAACTTGGAGGAATTTGCATTTGAAGAAGAAATGAGATTGTCTGCATCCGATTCGGTTTTTGCTGTATGGAAAACATGTCAATCCAGAGCTAGTAAAGAATTAGCAAGAATTATCGGAGAAAAA]
[-] EMBL CD165514 [TCTGATCGTACCAGAAATGAATCAGGCGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGACTGCTCTGTTCCATATGGGAACTATGGAGACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGAAACATT ]
[-] EMBL CD190689 [ CTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTCCAAAATGGTCGTCACTTTTATGCTCACCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGACTGCTCTGTTCCATATGGGAACTATGGAGACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGAAACATT ]
[+] EMBL CD137151 [ AGACTGCTCTGTTCCATATGGGAACTATGGAGACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGAAACATTTAATCTCTCAAGAACCAAATCCAGTTGGCGAGGAATTTATTCAGGGGCAAGTATACAATACCAGAGATTTGGAATATAGCTGTTCACTTTGTAAAGCGGATTTAGTTGGAGCTGATGATATTGAAAATCATCTACGTACTCTTACACATCAAAAGAAATATAAAGAGAAATTTAACTTGGAGGAATTTGCATTTGAAGAAGAAATGAGATTGTCTGCATCCGATTCGGTTTTTGCTGTATGGAAAACATGTCAATCCAGAGCTAGTAAAGAATTAGCAAGAATTATCGGAGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10419#0 AGATGAACAATTATACTGGACAATATGGATACATGTTTCCGATGCAACCAAACTATGCTT 60
consensus_10419#1 ------------------------------------------------------------
consensus_10419#0 GGGGTCCGAACCAAGCGCACACACCTGTTCAAGAGCCACAATATACCTATGGTTATGACT 120
consensus_10419#1 ------------------------------------------------------------
consensus_10419#0 CGAATAACCATCAGCCCCCTCCGTACACTGACTATATGGGACCTCAGGCACAAGATTATG 180
consensus_10419#1 ---------------TCTGATCGTACCAGAAATGAATCAGGC-----GAAGGAGAAGCTA 40
* ***** * * ** * * * * *** *
consensus_10419#0 AATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCC 240
consensus_10419#1 AAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGA-ACAAACATTTCAA--AATG 97
** * * ** * ** * *** ** * ***** ** *
consensus_10419#0 AACCTGGCTATAGTGCTCAA-TGGGGTGGGAATCAATTTCAAACTCCATCACACGATT-- 297
consensus_10419#1 GTCGTCACTTTTATGCTCATCTAAAGTGGAAA--AAGCATAAACGTCTTTGTAGAGTTGC 155
* * ** * ****** * **** ** ** **** * * * **
consensus_10419#0 CAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTC 357
consensus_10419#1 TAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTA-ATGATCCATTGG 214
* * ** * ** * * ** ** * * * *** *
consensus_10419#0 CTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAAT 417
consensus_10419#1 GTTCATTCACAT-TATATATGAATAAAGACTGC--TCTGTTCCATATGGGAACTATGGAG 271
* * * ** **** **** *** * ** * * *** * *
consensus_10419#0 ACTGTGATGTAGC---ATTCACGGATGAGAATAC-TTATTCCATACATTTGGATACTGAA 473
consensus_10419#1 ACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGA 331
***** * * ** *** * ** *** * ** ** ** * *** *** *
consensus_10419#0 AGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGA 533
consensus_10419#1 A---ACATT--TAATCTCTCAAGAACC--AAATCCAGTTGGCGAGGAATTTATTCAGGGG 384
* **** **** ** * * * * *** ** ** ** * * * **
consensus_10419#0 -AAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTG 592
consensus_10419#1 CAAGTATA-------CAATACCAGAGATTTGGAATATAGCTG----TTCACTTTGTAAAG 433
**** ** * ** **** ** * * * * * * *** ** *
consensus_10419#0 TGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGA 652
consensus_10419#1 CGGATTTAGTTGGAGCTGATGATATTGAAAAT--CATCTACGTACTCTTA-CACATCAAA 490
* * * * * ** * ***** ** *** ** ** **** ** *
consensus_10419#0 AGGA-CATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAA 711
consensus_10419#1 AGAAATATAAAGAGAAATTTAACTTGGAGGAATTTGCATT---TGAAGAAGAAATGAGAT 547
** * *** * ** * * * * * ** ** **** **** * *
consensus_10419#0 AGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTC 771
consensus_10419#1 TGTCTGCATCCGATTCGGTTT---TTGCTGTATGGA---AAACATGTCAATCCAGAGCTA 601
* ** ** * * * ** ** ****** ****** **** * *
consensus_10419#0 ACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTT 831
consensus_10419#1 G--TAAAGAATTAGCAAGAATTATCGGAGAAAAA-------------------------- 633
* * * * * * * * ** * **
consensus_10419#0 TAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCA 891
consensus_10419#1 ------------------------------------------------------------
consensus_10419#0 CATTATATATGAATAAAGAGAATCTTTGGTCATCCGCGCATTTATGTGTTGGATTATTGT 951
consensus_10419#1 ------------------------------------------------------------
consensus_10419#0 GTCCTTCCA 960
consensus_10419#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||