cluster # 1043

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1043 cluster # 1043 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1043#0 length = 953 sequences # 1

consensus_1043#1 length = 539 sequences # 1

consensusID : consensus_1043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 953
fasta sequence

                              [ACCTCGGTACGAGGGCGCAAATATGGACACGGTATCAAAAGTCACAAATTCTTTTCCATTATCAACATTTTGTGATATCTTAGAAATTATTGCAGAATTTTCAATTCAATTCACGTGTTTCAATGAATTAATTTATAATGTTATTCTTTGTGATTATAGTTATATGTTAGATTCGGATATATTTTTAAATTTTCTATGTAAATTATCCAATCATGTTATTCTGTTGGAAAATATAACTGGTCAATTAAACTCATGGTCACCTAGTTTAGGCGGTTGGATTAGTTTGCCTAATACTACTACTACTGCTACTGCCACTACAACTATTGCTAACGGGAATATGAAAGAAACTGAACGTGATATGATTTTAAAATTTTTGAAAATGTTATTTGATAAAAGTATACCTAATGAACTAAATTCAACAGGAGAAGGAAAATTTCAATTTACCAGTATACCACAAACATGGTTACCACCTGACCGTCCAGTTGATCTTAGACGTCCAAATTATGAATTATATATATTCTATACTGAATTACCATATCCAAATCAATTAACTAGTCGATTAGGTTCACATCGTTTATATATTGAATTATATTATGATAAACAATCATCAAATTATAAAAATTTATTAATGGCTGGTAGTTTTAGTCATGATACACAATTTTTNTAAATNTCANAGTGAATCTCTTCAATGTAACGTTNNGTTGTACTTGGTTACTTTACTCTTGNNTGTTGNTGNTGNTTTCTCTAGTTTCCTTTTTTGTTTGTTTGNTNGGTTTGAAACAAACTTGATATACGATCATAGTTATACTCAAAGTAGGTACTTCCCTAGATTATCCCTATGCTATCATGATATCTGGCTAAAAGCATCGATTCCTTCTTTAATCANTCTCAGGGAAGATAAAAGTTATTCTTATTGATCAATTTTGGCATCCTTTGCCCCTGAATGAATAAAA]

[+] EMBL CD082162             [ACCTCGGTACGAGGGCGCAAATATGGACACGGTATCAAAAGTCACAAATTCTTTTCCATTATCAACATTTTGTGATATCTTAGAAATTATTGCAGAATTTTCAATTCAATTCACGTGTTTCAATGAATTAATTTATAATGTTATTCTTTGTGATTATAGTTATATGTTAGATTCGGATATATTTTTAAATTTTCTATGTAAATTATCCAATCATGTTATTCTGTTGGAAAATATAACTGGTCAATTAAACTCATGGTCACCTAGTTTAGGCGGTTGGATTAGTTTGCCTAATACTACTACTACTGCTACTGCCACTACAACTATTGCTAACGGGAATATGAAAGAAACTGAACGTGATATGATTTTAAAATTTTTGAAAATGTTATTTGATAAAAGTATACCTAATGAACTAAATTCAACAGGAGAAGGAAAATTTCAATTTACCAGTATACCACAAACATGGTTACCACCTGACCGTCCAGTTGATCTTAGACGTCCAAATTATGAATTATATATATTCTATACTGAATTACCATATCCAAATCAATTAACTAGTCGATTAGGTTCACATCGTTTATATATTGAATTATATTATGATAAACAATCATCAAATTATAAAAATTTATTAATGGCTGGTAGTTTTAGTCATGATACACAATTTTTNTAAATNTCANAGTGAATCTCTTCAATGTAACGTTNNGTTGTACTTGGTTACTTTACTCTTGNNTGTTGNTGNTGNTTTCTCTAGTTTCCTTTTTTGTTTGTTTGNTNGGTTTGAAACAAACTTGATATACGATCATAGTTATACTCAAAGTAGGTACTTCCCTAGATTATCCCTATGCTATCATGATATCTGGCTAAAAGCATCGATTCCTTCTTTAATCANTCTCAGGGAAGATAAAAGTTATTCTTATTGATCAATTTTGGCATCCTTTGCCCCTGAATGAATAAAA]




>consensus_1043#0
ACCTCGGTACGAGGGCGCAAATATGGACACGGTATCAAAAGTCACAAATTCTTTTCCATT
ATCAACATTTTGTGATATCTTAGAAATTATTGCAGAATTTTCAATTCAATTCACGTGTTT
CAATGAATTAATTTATAATGTTATTCTTTGTGATTATAGTTATATGTTAGATTCGGATAT
ATTTTTAAATTTTCTATGTAAATTATCCAATCATGTTATTCTGTTGGAAAATATAACTGG
TCAATTAAACTCATGGTCACCTAGTTTAGGCGGTTGGATTAGTTTGCCTAATACTACTAC
TACTGCTACTGCCACTACAACTATTGCTAACGGGAATATGAAAGAAACTGAACGTGATAT
GATTTTAAAATTTTTGAAAATGTTATTTGATAAAAGTATACCTAATGAACTAAATTCAAC
AGGAGAAGGAAAATTTCAATTTACCAGTATACCACAAACATGGTTACCACCTGACCGTCC
AGTTGATCTTAGACGTCCAAATTATGAATTATATATATTCTATACTGAATTACCATATCC
AAATCAATTAACTAGTCGATTAGGTTCACATCGTTTATATATTGAATTATATTATGATAA
ACAATCATCAAATTATAAAAATTTATTAATGGCTGGTAGTTTTAGTCATGATACACAATT
TTTNTAAATNTCANAGTGAATCTCTTCAATGTAACGTTNNGTTGTACTTGGTTACTTTAC
TCTTGNNTGTTGNTGNTGNTTTCTCTAGTTTCCTTTTTTGTTTGTTTGNTNGGTTTGAAA
CAAACTTGATATACGATCATAGTTATACTCAAAGTAGGTACTTCCCTAGATTATCCCTAT
GCTATCATGATATCTGGCTAAAAGCATCGATTCCTTCTTTAATCANTCTCAGGGAAGATA
AAAGTTATTCTTATTGATCAATTTTGGCATCCTTTGCCCCTGAATGAATAAAA

consensusID : consensus_1043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [TTACCACCTGACCGTCCAGTTGATCTTAGACGTCCAAANTTATGAATTATATATATTCTATACTGAATTACCATATCCAAATCAATTAACTAGTCGATTAGGTTCACATCGTTTATATATTGAATTATATTATGATAAACAATCATCAAATTATAAAAATTTATTAATGGCTGGTAGTTTTAGTCATGATACACAATTTTTTTAAATTTCAAAGTGAATCTCTTCAAATGTAACGTTGTTTGTTACTTGGTTACTTTTACTCTTGTTGTTTGTTGTTGTTTTCTCTAGTTTTCCTTTTTTTGTTTGTTTGTTTGTTTTGTAAACAAAACTTGATTATACGATCAATAGTTTATACCTCAGAAGTAGGTTACTTTCCCTTAGATATATTCACTTATGCTTATCATGTATATCTGTCTTAAATAGCATCGTATTTCTTTCTTTAATTCAGTTCTTCAGTGGATGATTAAAAGTTTTATTCTTATTTGTATCATATTTTTGCACATTCCTTATGCGCTACTGATATGATATAAAAAGTGTTT]

[-] EMBL CD075778             [TTACCACCTGACCGTCCAGTTGATCTTAGACGTCCAAANTTATGAATTATATATATTCTATACTGAATTACCATATCCAAATCAATTAACTAGTCGATTAGGTTCACATCGTTTATATATTGAATTATATTATGATAAACAATCATCAAATTATAAAAATTTATTAATGGCTGGTAGTTTTAGTCATGATACACAATTTTTTTAAATTTCAAAGTGAATCTCTTCAAATGTAACGTTGTTTGTTACTTGGTTACTTTTACTCTTGTTGTTTGTTGTTGTTTTCTCTAGTTTTCCTTTTTTTGTTTGTTTGTTTGTTTTGTAAACAAAACTTGATTATACGATCAATAGTTTATACCTCAGAAGTAGGTTACTTTCCCTTAGATATATTCACTTATGCTTATCATGTATATCTGTCTTAAATAGCATCGTATTTCTTTCTTTAATTCAGTTCTTCAGTGGATGATTAAAAGTTTTATTCTTATTTGTATCATATTTTTGCACATTCCTTATGCGCTACTGATATGATATAAAAAGTGTTT]




>consensus_1043#1
TTACCACCTGACCGTCCAGTTGATCTTAGACGTCCAAANTTATGAATTATATATATTCTA
TACTGAATTACCATATCCAAATCAATTAACTAGTCGATTAGGTTCACATCGTTTATATAT
TGAATTATATTATGATAAACAATCATCAAATTATAAAAATTTATTAATGGCTGGTAGTTT
TAGTCATGATACACAATTTTTTTAAATTTCAAAGTGAATCTCTTCAAATGTAACGTTGTT
TGTTACTTGGTTACTTTTACTCTTGTTGTTTGTTGTTGTTTTCTCTAGTTTTCCTTTTTT
TGTTTGTTTGTTTGTTTTGTAAACAAAACTTGATTATACGATCAATAGTTTATACCTCAG
AAGTAGGTTACTTTCCCTTAGATATATTCACTTATGCTTATCATGTATATCTGTCTTAAA
TAGCATCGTATTTCTTTCTTTAATTCAGTTCTTCAGTGGATGATTAAAAGTTTTATTCTT
ATTTGTATCATATTTTTGCACATTCCTTATGCGCTACTGATATGATATAAAAAGTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1043#0      ACCTCGGTACGAGGGCGCAAATATGGACACGGTATCAAAAGTCACAAATTCTTTTCCATT 60
consensus_1043#1      ------------------------------------------------------------
                                                                                  

consensus_1043#0      ATCAACATTTTGTGATATCTTAGAAATTATTGCAGAATTTTCAATTCAATTCACGTGTTT 120
consensus_1043#1      ------------------------------------------------------------
                                                                                  

consensus_1043#0      CAATGAATTAATTTATAATGTTATTCTTTGTGATTATAGTTATATGTTAGATTCGGATAT 180
consensus_1043#1      ------------------------------------------------------------
                                                                                  

consensus_1043#0      ATTTTTAAATTTTCTATGTAAATTATCCAATCATGTTATTCTGTTGGAAAATATAACTGG 240
consensus_1043#1      ------------------------------------------------------------
                                                                                  

consensus_1043#0      TCAATTAAACTCATGGTCACCTAGTTTAGGCGGTTGGATTAGTTTGCCTAATACTACTAC 300
consensus_1043#1      ------------------------------------------------------------
                                                                                  

consensus_1043#0      TACTGCTACTGCCACTACAACTATTGCTAACGGGAATATGAAAGAAACTGAACGTGATAT 360
consensus_1043#1      ------------------------------------------------------------
                                                                                  

consensus_1043#0      GATTTTAAAATTTTTGAAAATGTTATTTGATAAAAGTATACCTAATGAACTAAATTCAAC 420
consensus_1043#1      ------------------------------------------------------------
                                                                                  

consensus_1043#0      AGGAGAAGGAAAATTTCAATTTACCAGTATACCACAAACATGGTTACCACCTGACCGTCC 480
consensus_1043#1      -------------------------------------------TTACCACCTGACCGTCC 17
                                                                 *****************

consensus_1043#0      AGTTGATCTTAGACGTCCAAATT-ATGAATTATATATATTCTATACTGAATTACCATATC 539
consensus_1043#1      AGTTGATCTTAGACGTCCAAANTTATGAATTATATATATTCTATACTGAATTACCATATC 77
                      ********************* * ************************************

consensus_1043#0      CAAATCAATTAACTAGTCGATTAGGTTCACATCGTTTATATATTGAATTATATTATGATA 599
consensus_1043#1      CAAATCAATTAACTAGTCGATTAGGTTCACATCGTTTATATATTGAATTATATTATGATA 137
                      ************************************************************

consensus_1043#0      AACAATCATCAAATTATAAAAATTTATTAATGGCTGGTAGTTTTAGTCATGATACACAAT 659
consensus_1043#1      AACAATCATCAAATTATAAAAATTTATTAATGGCTGGTAGTTTTAGTCATGATACACAAT 197
                      ************************************************************

consensus_1043#0      TTTTNTAAATNTCANAGTGAATCTCTTCAA-TGTAACGTTNNGTTGTACTTGGTTACTTT 718
consensus_1043#1      TTTTTTAAATTTCAAAGTGAATCTCTTCAAATGTAACGTTGTTTGTTACTTGGTTACTTT 257
                      **** ***** *** *************** *********   *  **************

consensus_1043#0      -ACTCTTGNNTGTTGNTGNTGNTTTCTCTAGTTTCC--TTTTTTGTTTGTTTGNTNGGTT 775
consensus_1043#1      TACTCTTGTTGTTTGTTGTTGTTTTCTCTAGTTTTCCTTTTTTTGTTTGTTTGTTTGTTT 317
                       *******    *** ** ** ************ *  *************** * * **

consensus_1043#0      TG-AAACAAA-CTTGAT-ATACGATCA-TAGTT-ATACTC--AAAGTAGGT-ACTTCCC- 826
consensus_1043#1      TGTAAACAAAACTTGATTATACGATCAATAGTTTATACCTCAGAAGTAGGTTACTTTCCC 377
                      ** ******* ****** ********* ***** ****     ******** **** ** 

consensus_1043#0      -TAGAT-TATCC--CTATGCT-ATCATG-ATATCTGGCTAAAA--GCATCGA--TTCCTT 876
consensus_1043#1      TTAGATATATTCACTTATGCTTATCATGTATATCTGTCTTAAATAGCATCGTATTTCTTT 437
                       ***** *** *   ****** ****** ******* ** ***  ******   *** **

consensus_1043#0      CTTTAAT-CANTC--TCAG-GGAAGATAAAAG---TTATTCTTATTG--ATCA-ATTTTG 926
consensus_1043#1      CTTTAATTCAGTTCTTCAGTGGATGATTAAAAGTTTTATTCTTATTTGTATCATATTTTT 497
                      ******* ** *   **** *** *** ***    ***********   **** ***** 

consensus_1043#0      GCA---TCCTT---TGCCCCTGA-ATGA-ATAAAA------- 953
consensus_1043#1      GCACATTCCTTATGCGCTACTGATATGATATAAAAAGTGTTT 539
                      ***   *****    **  **** **** ******