These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1197 fasta sequence [TTTGGGTTCTTTAAGAAGACGGGTTTTAACTCATATGGTTTAGGTATTCGTTTCTTTACGACCACTTCTGGATGCTTAGTGGAGGAGCCCATTGTTCTAAGCAAGTTGAAACGAGGAACTGGTGGGAGAGCTTCAT-TTAATGGCATAACCGTGACCGTGTTTGGTGGTACTGGATACTTAGGTCGGAATTTAATGGCACAACTAGCCAAAACTGGAACACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTCATCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAAAATAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGGTATACATAACTCCAATGTCCCCCTTGTTTTTAGCCCGGACTTACATCTATGAAAAGGTTGCTCCCGTTCATTCCTACCTTACTTTTGAACGGTTAGAGAGGGAAAGTGCTACGGATATTTTATCTGGTTACCCACACTTGATGATCTTATGTCAGCTANGGAATNNGAGACACATNATCATATTGATTCTTATCGCGACAGTCTCTATGGATGCTCTTGTGAATTNCGAGCCGCTCCTCCCTATCAATTCANNATTCTGCTAATNGATTATACTAGATCTAGATGGAATGTGGGGGAAAGAAATT] [+] EMBL AI067383 [TTTGGGTTCTTTAAGAAGACGGGTTTTAACTCATATGGTTTAGGTATTCGTTTCTTTACGACCACTTCTGGATGCTTAGTGGAGGAGCCCATTGTTCTAAGCAAGTTGAAACGAGGAACTGGTGGGAGAGCTTCAT TTAATGGCATAACCGTGACCGTGTTTGGTGGTACTGGATACTTAGGTCGGAATTTAATGGCACAACTAGCCAAAACTGGAACACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTCATCAACCTAACAGGCACAGAATCTGACACT ] [+] EMBL AI068156 [TTTGGGTTCTTTAAGAAGACGGGTTTTAACTCATATGGTTTAGGTATTCGTTTCTTTACGACCACTTCTGGATGCTTAGTGGAGGAGCCCATTGTTCTAAGCAAGTTGAAACGAGGAACTGGTGGGAGAGCTTCAT TTAATGGCATAACCGTGACCGTGTTTGGTGGTACTGGATACTTAGGTCGGAATTTAATGGCACAACTAGCCAAAACTGGAACACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTCATCAACC ] [-] EMBL CD061429 [ TTTAGGTATTCGTTTCTTTACGACCACTTCTGGATGCTTAGTGGAGGAGCCCATTGTTCTAAGCAAGTTGAAACGAGGAACTGGTGGGAGAGCTTCATCCTAATGGCATAACCGTGACCGTGTTTGGTGGTACT GATACTTAGGTCGGAATTTAA ] [+] EMBL CD082215 [ cacgaagaCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTTCTCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAAAATAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGGTATACATAACTCCAATGTCCCCCTTGTTTTTAGCCCGGACTTACATCTATGAAAAGGTTGCTCCCGTTCATTCCTACCTTACTTTTGAACGGTTAGAGAGGGAAAGTGCTACGGATATTTTATCTGGTTACCCACACTTGATGATCTTATGTCAGCTANGGAATNNGAGACACATNATCATATTGATTCTTATCGCGACAGTCTCTATGGATGCTCTTGTGAATTNCGAGCCGCTCCTCCCTATCAATTCANNATTCTGCTAATNGATTATACTAGATCTAGATGGAATGTGGGGGAAAGAAATT] consensusID : consensus_10456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 900 fasta sequence [GGNAATTCGATTGAGTAAACTCCGTCCTGGAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCTTTTTAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGGTATACATAACTCCAATGTCCCCCTTGTTTTTAGCCCGGACTTACATCTATGAAAAGGTTGCTCCCGTTCATTCCTACCTTACTTTTGAACGGTTAGAGAGGGAAAGTGCTACGGATATTTTATCTGGTTACCCAACACTTGATGATCTTAATGTCAAGCTAAGGAAATTGGAGGACCACATTAATCATATTGTATTTCTTCATCGCCGACAGCTCTTCTACTGGGATGCTCTTGGCTAATTTCCGGAGCCGCCTCCTCCCCCTATCCAATTTCAGTAATTTTCTGCTTAATTTGAATTTAATACTTAGAATTCATAGTATGGTATTGTTGTGTGAGAAGGTAAATTATATACTATAAA] [+] EMBL CD133090 [GGNAATTCGATTGAGTAAACTCCGTCCTGGAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCTTTTTAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCT ] [+] EMBL CD139149 [ AGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCA TATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGGTATACATAACTCCAATGTCCCCCTTG TTTTAGCCCGGACTTACATCTATGAAAAGGTTGCTCCCGCTCAT ] [+] EMBL CD131347 [ CGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGGTATACATAACTCCAATGTCCCCCTTGTTTTTAGCCCGGACTTACATCTATGAAAAGGTTGCTCCCGTTCATTCCTACCTTACTTTTGAACGGTTAGAGAGGGAAAGTGCTACGGATATTTTATCTGGTTACCCAACACTTGATGATCTTAATGTCAAGCTAAGGAAATTGGAGGACCACATTAATCATATTGTATTTCTTCATCGCCGACAGCTCTTCTACTGGGATGCTCTTGGCTAATTTCCGGAGCCGCCTCCTCCCCCTATCCAATT ] [-] EMBL CD075827 [ ATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGGTATACATAACTCCAATGTCCCCCTTGTTTTTAGCCCGGACTTACATCTATGAAAAGGTTGCTCCCGTTCATTCCTACCTTACTTTTGAACGGTTAGAGAGGGAAAGTGCTACGGATATTTTATCTGGTTACCCAACACTTGATGATCTTAATGTCAAGCTAAGGAAATTGGAGGACCACATTAATCATATTGTATTTCTTCATCGCCGACAGCTCTTCTACTGGGATGCTCTTGGTGAATTTCCGGAGCCGCCTCCTCCCCCTATCCAATTTCAGTAATTTTCTGCTTAATTTGAATTTAATACTTAGAATTCATAGTATGGTATTGTTGTGTGAGAAGGTAAATTATATACTATAAA] consensusID : consensus_10456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 721 fasta sequence [AGGCCATTAATTCGGCACGAGGAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTCATCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAAAATAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGGTATACATAACTCCAATGTCCCCCTTGTTTTTGTAAGTACCTTATATAAATATATCTATCAAAATA] [+] EMBL CD081736 [AGGCCATTAATTCGGCACGAGGAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTCATCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAAAATAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGGTATACATAACTCCAATGTCCCCCTTGTTTTTGTAAGTACCTTATATAAATATATCTATCAAAATA] [-] EMBL CD075469 [ GAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTCATCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAAAATAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTTATCGATTAGATGACATGGTAAAATGGATTTACTGGCTTTGTCGATACTTACCTAGTAAAGTATACATAACTCCAATGTCCCCCTTGTTTTTGTAAGTACCTTATATAAAGATt ] [-] EMBL CD188477 [ GAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGACGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTAGTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCAATTCATTGCATAAT ] consensusID : consensus_10456#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CGTGTTTGGTGGTACTGGATACTTAGGTCGGATTTAAATGGCACAACTAGCCAAAACTGGACNACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGGTACGTAATTCTTAGGGCTACTTTTTTATATATACAAACGTGAATGTAGAGTTCATGTGTATTCAGAAACATTCAATATTTATCTCGAGATTGATTGGATTCTTCTGTCTACTTATTTTTTATCTTTCTCGTTTTTTTTGGGGGGGGGGAAGGGTAGCGCTTCAACCGCTCTTCCCAATGTTGTTATATAGAGCTGTTCGCCATCACACATTTTTCGCAATAAATATGTGAATTAAAGGCCTTTCACCTGAATTTAATATTCCTTTTAGCGAACTTAATGAATAGATCATCAAACTGTTATCATTAGGTTATATGATCTAATTGATTTGAAACCTAAACAATCCTGTGACGCTGAAAATTTTAAAAGTCAACTTTACTGTGAAGAAATAGATTTTCGGTAAAGTTATCCTTCAAATGCA] [-] EMBL CD201077 [CGTGTTTGGTGGTACTGGATACTTAGGTCGGATTTAAATGGCACAACTAGCCAAAACTGGACNACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGGTACGTAATTCTTAGGGCTACTTTTTTATATATACAAACGTGAATGTAGAGTTCATGTGTATTCAGAAACATTCAATATTTATCTCGAGATTGATTGGATTCTTCTGTCTACTTATTTTTTATCTTTCTCGTTTTTTTTGGGGGGGGGGAAGGGTAGCGCTTCAACCGCTCTTCCCAATGTTGTTATATAGAGCTGTTCGCCATCACACATTTTTCGCAATAAATATGTGAATTAAAGGCCTTTCACCTGAATTTAATATTCCTTTTAGCGAACTTAATGAATAGATCATCAAACTGTTATCATTAGGTTATATGATCTAATTGATTTGAAACCTAAACAATCCTGTGACGCTGAAAATTTTAAAAGTCAACTTTACTGTGAAGAAATAGATTTTCGGTAAAGTTATCCTTCAAATGCA] consensusID : consensus_10456#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [CATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGCTTTGCAAACTTATTTTATTTGAATACATAAATGTTGCTACAAACAGGGACTAAAACAAATATGCCCCGCACATATAAGTGAGTGAAATCGTGAAAGATGAGGGAGAGTAAATTTAATAAAAAATTAATTGTTAAATAGGTAAAAAATGAGTGGGCAAGAGCAGCAAATAATGCAAGAAACAATTATGATACTTAAATAATTTCATCTCACCCGGTACATTATAAACTAACCATTTTACCGTTACGTTATAAAATCGACGAGGAACTGTGAGCATGCATATCCAGGCAAAAATAAAACTTGCCCCAAATCTCCAATAACTTTTACATTTCT] [+] EMBL AI977610 [CATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGCTTTGCAAACTTATTTTATTTGAATACATAAATGTTGCTACAAACAGGGACTAAAACAAATATGCCCCGCACATATAAGTGAGTGAAATCGTGAAAGATGAGGGAGAGTAAATTTAATAAAAAATTAATTGTTAAATAGGTAAAAAATGAGTGGGCAAGAGCAGCAAATAATGCAAGAAACAATTATGATACTTAAATAATTTCATCTCACCCGGTACATTATAAACTAACCATTTTACCGTTACGTTATAAAATCGACGAGGAACTGTGAGCATGCATATCCAGGCAAAAATAAAACTTGCCCCAAATCTCCAATAACTTTTACATTTCT] consensusID : consensus_10456#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [GGAACTGGTGGGAGAGCTTCATTTAATGGCATAACCGTGACCGTGTTTGCTGGTACTGGATACTTAGGTCGGAATTTAATGGCACAACTAGCCAAAACTGGAACACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTCATCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATGATGCGGCCTCTCGAGTTCACTCCACGCC] [-] EMBL CD126608 [GGAACTGGTGGGAGAGCTTCATTTAATGGCATAACCGTGACCGTGTTTGCTGGTACTGGATACTTAGGTCGGAATTTAATGGCACAACTAGCCAAAACTGGAACACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTGGTCATCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACACATGATGCGGCCTCTCGAGTTCACTCCACGCC] consensusID : consensus_10456#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [AGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAAAATAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTCCTGCGTGAACGTCCAGACGCTACAATTTTCAGGCCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAA] [+] EMBL CD144596 [AGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAAAATAAGAATCCTCCGAAATATGTTCGAAAGCATTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTCCTGCGTGAACGTCCAGACGCTACAATTTTCAGGCCAGCTGAAATATGGGGACCACATGATCGTTTTTTGTGTTATTTTGCTTCAAGACCTCGGCGATTCACTAGAAACTTTACTATCGAACATGTACACATTGATGCGGCCTCTCGAATTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGGTCCATGTATCTGCACTGTGTCAA] consensusID : consensus_10456#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [TCGGAATTTAATGGCACAACTAGCCAAAACTGGAACACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGACCCCCCATCAATCACAATACCATA] [-] EMBL BG930159 [TCGGAATTTAATGGCACAACTAGCCAAAACTGGAACACAGATTATTCTTCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTTTTGCCTTTTGATTTGAAAGATGATGACCCCCCATCAATCACAATACCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 ------------------------------------------------------------ consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 ------------------------------------------------------------ consensus_10456#0 TTTGGGTTCTTTAAGAAGACGGGTTTTAACTCATATGGTTTAGGTATTCGTTTCTTTACG 60 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 ------------------------------------------------------------ consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 ------------------------------------------------------------ consensus_10456#0 ACCACTTCTGGATGCTTAGTGGAGGAGCCCATTGTTCTAAGCAAGTTGAAACGAGGAACT 120 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 ------------------------------------------------------------ consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 ------------------------------------------------------------ consensus_10456#0 GGTGGGAGAGCTTCATTTAATGGCATAACCGTGACCGTGTTTGGTGGTACTGGATACTTA 180 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 ------------------------------------------------------------ consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 --------------------------------------------------------AGGC 4 consensus_10456#0 GGTCGGAATTTAATGGCACAACTAGCCAAAACTGGAACACAGATTATTCTTCCATACAGA 240 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 ------------------------------------------------------------ consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 CATTAATTCGGCACGAGGAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTT 64 consensus_10456#0 TGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCAAGTTTTATTT 300 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ---------------------------------------------------------GGA 3 consensus_10456#1 --------------------------------------------------GGNAATTCGA 10 consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 TTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTG 124 consensus_10456#0 TTGCCTTTTGATTTGAAAGATGATGAGTCCTTAAGAAAGGCTATGAAGTATAGTGATGTG 360 consensus_10456#4 ----------------------------------------------CATACGGTAATGCA 14 consensus_10456#3 --------------------------------------CGTGTTTGGTGGTACTGGATAC 22 consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ACTGGTGGGAGAGCTTCATTTAATGGCATAACCGTGACCGTGTTTGCTGGTACTGGATAC 63 consensus_10456#1 TTGAGTAAACTCCGTCCTGGAGAATCTGACACTAGAAACTTTACTATCGAACATGTACAC 70 consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 GTCATCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACAC 184 consensus_10456#0 GTCATCAACCTAACAGGCACAGAATCTGACACTAGAAACTTTACTATCGAACATGTACAC 420 consensus_10456#4 GCTGCATGGCATGTTTTTTTT--TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 72 consensus_10456#3 TTAGGTCGGATTT---AAA--TGGCACAACTAGCC--AAAACTGGACNACAGATTATTCT 75 consensus_10456#7 -----TCGGAATT---TAA--TGGCACAACTAGCC--AAAACTGGAACACAGATTATTCT 48 consensus_10456#5 TTAGGTCGGAATT---TAA--TGGCACAACTAGCC--AAAACTGGAACACAGATTATTCT 116 consensus_10456#1 ATTGATGCGGCCTCTCGAA--TTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGG 128 consensus_10456#6 -------------------------------------AGAGTTAGGAGTTCAGCAACTGG 23 consensus_10456#2 ATTGATGCGGCCTCTCGAA--TTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGG 242 consensus_10456#0 ATTGATGCGGCCTCTCGAA--TTGCAAGGATATCTAAAGAGTTAGGAGTTCAGCAACTGG 478 consensus_10456#4 TTTTTTAAGGCTTTGCAAACTTATTTTATTTGAATACATAAATGTTGCTACAAACAGGGA 132 * * * * consensus_10456#3 TCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCA 135 consensus_10456#7 TCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCA 108 consensus_10456#5 TCCATACAGATGTGACCCTCATATGATCAGAGATGTAAAAGTTATTGGAGATCTGGGGCA 176 consensus_10456#1 TCCATGTATCTGC-ACTGTGTCTTTTTAAGAATCCTCCGAAATAT----GTTCGAAAGCA 183 consensus_10456#6 TCCATGTATCTGC-ACTGTGTCAAAATAAGAATCCTCCGAAATAT----GTTCGAAAGCA 78 consensus_10456#2 TCCATGTATCTGC-ACTGTGTCAAAATAAGAATCCTCCGAAATAT----GTTCGAAAGCA 297 consensus_10456#0 TCCATGTATCTGC-ACTGTGTCAAAATAAGAATCCTCCGAAATAT----GTTCGAAAGCA 533 consensus_10456#4 CTAAAACAAATATGCCCCGCACATATAAGTGAGTGAAATCGTGAAAGATGAGGGAGAGTA 192 * * * * * * * * consensus_10456#3 AGTTTTATTTTTGGTACGTAA-----TTCTTAGGGCTACTTTTTTATATATACAAACGTG 190 consensus_10456#7 AGTTTTATTTTTGCCTTTTGA-----TTTGAAAGATGATGACCCCCCAT---CAATCACA 160 consensus_10456#5 AGTTTTATTTTTGCCTTTTGA-----TTTGAAAGATGATGAGTCCTTAAGAAAGGCTATG 231 consensus_10456#1 TTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGA 243 consensus_10456#6 TTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTCCTGCGTGAACGTCCAGA 138 consensus_10456#2 TTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGA 357 consensus_10456#0 TTCTCGATTTATGGTATCTAAAGCAATTGGTGAAGAAGAGGTTCTGCGTGAACGTCCAGA 593 consensus_10456#4 AATTTAATAAAAAATTAATTGTTAAATAGGTAAAA-AATGAGTGGGCAAGAGCAGCAAAT 251 * ** * * consensus_10456#3 AA-TGTAGAGTTCATGTG--T---ATTCAGAAACATTCAATATTTA-TCTCGAGATTGAT 243 consensus_10456#7 AT-ACCATA--------------------------------------------------- 168 consensus_10456#5 AAGTATAGTGATGTGGTCATC---AACCTAACAGGCACAGAATCTG-ACACTAGAAACTT 287 consensus_10456#1 CGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGT-TTTTTGTGTTATT 302 consensus_10456#6 CGCTACAATTTTCAGGCCAGCTGAAATATGGGGACCACATGATCGT-TTTTTGTGTTATT 197 consensus_10456#2 CGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGT-TTTTTGTGTTATT 416 consensus_10456#0 CGCTACAATTTTCAGACCAGCTGAAATATGGGGACCACATGATCGT-TTTTTGTGTTATT 652 consensus_10456#4 AATGCAAGAAACAATTATGATACTTAAATAATTTCATCTCACCCGGTACATTATAAACTA 311 * consensus_10456#3 TGGATTCTTCTGTCTACTTATTTTTTATCTTTC----TCGTTTTTTTTGGGGGGGGGGAA 299 consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 TACTATCGAACATGTACACATGATGCGGCCTCT----CGAGTTCACTCCACGCC------ 337 consensus_10456#1 TTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTA 362 consensus_10456#6 TTGCTTCAAGACCTCGGCGATTCACTAGAA--------------ACTTTACTATCGAACA 243 consensus_10456#2 TTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTA 476 consensus_10456#0 TTGCTTCAAGACCTCGGCGATTCACTAGACTGCAAAGTGTTCATATTCCATTATGGGCTA 712 consensus_10456#4 ACCATTTTACCGTTACGTTATAAAATCGACGAGGAACTGTGAGCATGCATATCCAGGCAA 371 consensus_10456#3 GGGTAGCGCTTCAACCGCTCTTCCCAATGTTGTTATATAGAGCTGTTCGCCATCACACAT 359 consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 GTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCA 422 consensus_10456#6 T------GTACACATTGATGCGGCCTCTCGAATTGCAAGGA--TATCTAAAGAGTTAGGA 295 consensus_10456#2 GTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCA 536 consensus_10456#0 GTGGAAAAAATACCGTAAAGCAACCTGTTTGTGTACATGATCTTGCTTGTGGAATTGTCA 772 consensus_10456#4 AAATAAAACTTGCCCCAAATCTCCAATAACTTTTACATTTCT------------------ 413 consensus_10456#3 TTTTCGCAATAAATATGTGAATTAAAGGCCTTTCACCTGAATTTAATATTCCTTTTAGCG 419 consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 ATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTT 482 consensus_10456#6 GTTCAGCAACTGGTCCAT-GTATCTGCACTGTGTCAA----------------------- 331 consensus_10456#2 ATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTT 596 consensus_10456#0 ATTCATTGCATAATCCAGAGTCACTAGGACAAATTTATGAAGCCGTTGGTCCTCATCGTT 832 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 AACTTAATGAATAGATCATCAAACTGTTATCATTAGGTTATATGATCTAATTGATTTGAA 479 consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 ATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGG 542 consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 ATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGG 656 consensus_10456#0 ATCGATTAGATGACATGGTAAAATGGATTTACTTCCTTTGTCGATACTTACCTAGTGAGG 892 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ACCTAAACAATCCTGTGACGCTGAAAATTTTAAAAGTCAACTTTACTGTGAAGAAATAGA 539 consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 TATACATAACTCCAATGTCCCCCTTGTTTTTAGCCCGGACTTACATCTATGAAAAGGTTG 602 consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 TATACATAACTCCAATGTCCCCCTTGTTTTTGTAAGTACCTTATATAAATATATCTATCA 716 consensus_10456#0 TATACATAACTCCAATGTCCCCCTTGTTTTTAGCCCGGACTTACATCTATGAAAAGGTTG 952 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 TTTTCGGTAAAGTTATCCTTCAAATGCA-------------------------------- 567 consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 CTCCCGTTCATTCCTACCTTACTTTTGAACGGTTAGAGAGGGAAAGTGCTACGGATATTT 662 consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 AAATA------------------------------------------------------- 721 consensus_10456#0 CTCCCGTTCATTCCTACCTTACTTTTGAACGGTTAGAGAGGGAAAGTGCTACGGATATTT 1012 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 TATCTGGTTACCCAACACTTGATGATCTTAATGTCAAGCTAAGGAAATTGGAGGACCACA 722 consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 ------------------------------------------------------------ consensus_10456#0 TATCTGGTTACCCA-CACTTGATGATCTTA-TGTCAGCTANGGAATNNGAGACACATNAT 1070 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 TTAATCATATTGTATTTCTTCATCGCCGACAGCTCTTCTACTGGGATGCTCTTGGCTAAT 782 consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 ------------------------------------------------------------ consensus_10456#0 CATATTGATTCTTATCGCGACAGTCTCTATGGATGCTCTTGTGAATTNCGAGCCGCTCCT 1130 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ------------------------------------------------------------ consensus_10456#7 ------------------------------------------------------------ consensus_10456#5 ------------------------------------------------------------ consensus_10456#1 TTCCGGAGCCGCCTCCTCCCCCTATCCAATTTCAGTAATTTTCTGCTTAATTTGAATTTA 842 consensus_10456#6 ------------------------------------------------------------ consensus_10456#2 ------------------------------------------------------------ consensus_10456#0 CCCTATCAATTCANNATTCTGCTAATNGATTATACTAGATCTAGATGGAATGTGGGGGAA 1190 consensus_10456#4 ------------------------------------------------------------ consensus_10456#3 ---------------------------------------------------------- consensus_10456#7 ---------------------------------------------------------- consensus_10456#5 ---------------------------------------------------------- consensus_10456#1 ATACTTAGAATTCATAGTATGGTATTGTTGTGTGAGAAGGTAAATTATATACTATAAA 900 consensus_10456#6 ---------------------------------------------------------- consensus_10456#2 ---------------------------------------------------------- consensus_10456#0 AGAAATT--------------------------------------------------- 1197 consensus_10456#4 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||