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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 596 fasta sequence
[AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA]
[-] EMBL CD130135 [AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ]
[-] EMBL CD130163 [ AGTTTATCACTGTANCCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ]
[+] EMBL CD130207 [ ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ]
[+] EMBL CD130056 [ ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ]
[+] EMBL CD130091 [ ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ]
[+] EMBL CD130142 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ]
[+] EMBL CD130084 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ]
[-] EMBL CD130199 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ]
[-] EMBL CD130119 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ]
[+] EMBL CD130103 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAACTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ]
[-] EMBL CD130111 [ GTTCACGGCCAGCACCAGCTGCCATACNATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ]
[-] EMBL CD130147 [ tGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ]
[-] EMBL CD130130 [ AGGCTTCAGCTCATCCACAATTACTTTTCCCTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCCCCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ]
[+] EMBL CD142915 [ AAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTAC ]
[+] EMBL CD135558 [ CAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTGCAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGAGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA]
consensusID : consensus_10463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence
[ATTCGAACCTGAAAGTCATTGGGGAGCGGCACACGTGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACATCTTTCTCATGTCCAACAAAGCGTCTAG]
[-] EMBL CD135890 [ATTCGAACCTGAAAGTCATTGGGGAGCGGCACACGTGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACATCTTTCTCATGTCCAACAAAGCGTCTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10463#0 AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAA 60
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 ACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCAC 120
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 AATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCA 180
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 ATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAA 240
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACA 300
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATT 360
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGA 420
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 TACAATAATTGGGTTAGAAG--CATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTG 478
consensus_10463#1 ------ATTCGAACCTGAAAGTCATTGGG---GAGCGGCACACGTGAAACCCAGTCTTTG 51
* * * *** ******* ** ****** ****************
consensus_10463#0 TGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTC 538
consensus_10463#1 TGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTC 111
************************************************************
consensus_10463#0 TTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA-- 596
consensus_10463#1 TTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACA 171
**********************************************************
consensus_10463#0 ----------------------------
consensus_10463#1 TCTTTCTCATGTCCAACAAAGCGTCTAG 199
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||