cluster # 10463

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Schistosoma mansoni
cluster # 10463 cluster # 10463 Sequences # 16 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10463#0 length = 596 sequences # 15

consensus_10463#1 length = 199 sequences # 1

consensusID : consensus_10463#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 596
fasta sequence

                              [AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA]

[-] EMBL CD130135             [AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD130163             [ AGTTTATCACTGTANCCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD130207             [                                                              ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD130056             [                                                              ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD130091             [                                                              ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD130142             [                                                               CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD130084             [                                                               CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD130199             [                                                               CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD130119             [                                                               CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD130103             [                                                               CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAACTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD130111             [                                                                       GTTCACGGCCAGCACCAGCTGCCATACNATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD130147             [                                                                                 tGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD130130             [                                                                                                      AGGCTTCAGCTCATCCACAATTACTTTTCCCTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCCCCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD142915             [                                                                                                                                                                                                  AAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTAC                                                                                                     ]
[+] EMBL CD135558             [                                                                                                                                                                                                                                                                                                  CAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTGCAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGAGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA]




>consensus_10463#0
AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAA
ACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCAC
AATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCA
ATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAA
GTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACA
GAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATT
GGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGA
TACAATAATTGGGTTAGAAGCATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTGTG
TGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTT
GTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA

consensusID : consensus_10463#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [ATTCGAACCTGAAAGTCATTGGGGAGCGGCACACGTGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACATCTTTCTCATGTCCAACAAAGCGTCTAG]

[-] EMBL CD135890             [ATTCGAACCTGAAAGTCATTGGGGAGCGGCACACGTGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACATCTTTCTCATGTCCAACAAAGCGTCTAG]




>consensus_10463#1
ATTCGAACCTGAAAGTCATTGGGGAGCGGCACACGTGAAACCCAGTCTTTGTGTGTGTCT
TCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGA
GATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACATCTTTCTCA
TGTCCAACAAAGCGTCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10463#0      AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAA 60
consensus_10463#1      ------------------------------------------------------------
                                                                                   

consensus_10463#0      ACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCAC 120
consensus_10463#1      ------------------------------------------------------------
                                                                                   

consensus_10463#0      AATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCA 180
consensus_10463#1      ------------------------------------------------------------
                                                                                   

consensus_10463#0      ATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAA 240
consensus_10463#1      ------------------------------------------------------------
                                                                                   

consensus_10463#0      GTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACA 300
consensus_10463#1      ------------------------------------------------------------
                                                                                   

consensus_10463#0      GAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATT 360
consensus_10463#1      ------------------------------------------------------------
                                                                                   

consensus_10463#0      GGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGA 420
consensus_10463#1      ------------------------------------------------------------
                                                                                   

consensus_10463#0      TACAATAATTGGGTTAGAAG--CATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTG 478
consensus_10463#1      ------ATTCGAACCTGAAAGTCATTGGG---GAGCGGCACACGTGAAACCCAGTCTTTG 51
                             * * *     ***   *******   **   ****** ****************

consensus_10463#0      TGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTC 538
consensus_10463#1      TGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTC 111
                       ************************************************************

consensus_10463#0      TTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA-- 596
consensus_10463#1      TTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACA 171
                       **********************************************************  

consensus_10463#0      ----------------------------
consensus_10463#1      TCTTTCTCATGTCCAACAAAGCGTCTAG 199