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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 752 fasta sequence
[CGCTCTTGGGCATTTAGGTATTTGATACTTCAACGGTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA-GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGAATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGTGATA-GGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGATGAAGTA-TTACTTGGTTCATTTGGTTTTTAAA-TGATC-TAATTCGCAGGATCTTTATGGACTACTAATTTCATATTTAAACAACCAATATTACC]
[+] EMBL CD188296 [CGCTCTTGGGCATTTAGGTATTTGATACTTCAACGGCTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTA ]
[+] EMBL CD094750 [ TATTTGATACTTCAACGGTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGGGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAAGGGAC ACTAGATATGATATTGATATGACC ]
[+] EMBL CD183406 [ GGTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATT ]
[+] EMBL CD188397 [ GTTATCATGACCTTGTCCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTAGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTAT ]
[+] EMBL CD165351 [ GTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAA ]
[+] EMBL CD165364 [ GTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCGGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCT ]
[-] EMBL CD189881 [ GTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTG ]
[+] EMBL CD078353 [ GCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGAATATTCTACTGAAACACATGAAAAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGTGATA GGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGATGAAGTA TTACTTGGNTCATTTGGTTTTTAAA TGATC TAATTCGCNAGATCTTTATGGACTACTAATTTCATATTTAAACATCCATTATTAC ]
[+] EMBL CD140744 [ CATTTGGGGCGCTACAATTCAAATTATAAACTACTTGCTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTATCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAG ]
[-] EMBL CD133656 [ aAGCAGATATTTTGAGAGGTCCACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCC TTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTG ]
[-] EMBL CD072913 [ taTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGAATATTCTACTGAAACACATGAAAAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGTGATA GGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGATGAAGTA TTACTTGGTTCATTTGGTTTTTAAA TGATC TAATTCGCAGGATCTTTATGGACTACTAATTTCATATTTAAACAATCAATATTAac]
[-] EMBL CD133600 [ taTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGCACCCATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTG ]
[+] EMBL SM647 [ TTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATCTATTGCGGGTTTTGNCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGNATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGNGATA GGTGGNAAGTCGAANTCTCAGAAAACCTAAAAGCAGATTATGTNTNTCGATGAAGTA TTACTTGGg ]
[+] EMBL SM659 [ TTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGGCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGAATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATNGCTGCAAAATGGTGATAGGGTGGGAAGTCGAAATCTCAGAAAACCNAAAAGCAGGTTATGTNTNTCGATGAAGTATTTACTGGGTCCATTGGGTTTTTAAATTGATCTTAATCCGCAGGATCTTTATGGNCTACTAA TTCA NTTTAAACAANCAA ]
[-] EMBL CD061108 [ TGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGAACCAAACTTCGAATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGTGATA GGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGAT ]
consensusID : consensus_10466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[CTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAAGGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGTAACCAATTTGTTCTTTTAAAGTTTTTACTATACTCGTAGTAACAAAGAGCATCTGGCTGGTTCTCTGGCCTGCGTACCAATTTCTCATTAACATATCTTTGAGTTTATTTTATTGCTTATCAGTTCACAACAGCAAAATCCAAATCTACTAGCAAATAATTAGTAATACTTTGTAAACGTTTTAAATTAAGAACCAATAGTTGACTTG]
[-] EMBL CD111502 [CTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAAGGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGTAACCAATTTGTTCTTTTAAAGTTTTTACTATACTCGTAGTAACAAAGAGCATCTGGCTGGTTCTCTGGCCTGCGTACCAATTTCTCATTAACATATCTTTGAGTTTATTTTATTGCTTATCAGTTCACAACAGCAAAATCCAAATCTACTAGCAAATAATTAGTAATACTTTGTAAACGTTTTAAATTAAGAACCAATAGTTGACTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10466#0 CGCTCTTGGGCATTTAGGTATTTGATACTTCAACGGTTATCATGACCTTGTTCAGCCGGA 60
consensus_10466#1 ------------------------------------------------------------
consensus_10466#0 GATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGAC 120
consensus_10466#1 ------------------------------------------------------------
consensus_10466#0 ACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTG 180
consensus_10466#1 ------------------------------------------------------------
consensus_10466#0 CCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAA 240
consensus_10466#1 ------------------------------------------------------------
consensus_10466#0 CCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTC 300
consensus_10466#1 ------------------------------------------CTTTCGAGAAGGGTCCTC 18
******************
consensus_10466#0 TCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGT 360
consensus_10466#1 TCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGT 78
************************************************************
consensus_10466#0 GCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTG 420
consensus_10466#1 GCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTG 138
************************************************************
consensus_10466#0 AGCCAAGAGCTGATGGAAGTAGAAGGACAACTAGATATGATATTGATATGACCAAGTGCA 480
consensus_10466#1 AGCCAAGAGCTGATGGAAGTAGAAGGACAACTAGATATGATATTGATATGACCAAGTGCA 198
************************************************************
consensus_10466#0 TTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACT 540
consensus_10466#1 TTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGTAACCAATT 258
*************************************************** * * ** *
consensus_10466#0 TCGAATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATTG-CTGCAA 599
consensus_10466#1 T-----GTTCTTTTAAAGTTTTTACTATACTCGTA-GTAACAAAGAGCATCTGGCTGGTT 312
* **** * ** * * * ** *** ***** * ** ***
consensus_10466#0 AATGGTGATAGGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGA 659
consensus_10466#1 CTCTGGCCTGCGTACCAATTTCTCATT--AACATATCTTTGAGTTTATTTTAT-TGCTTA 369
* * ** ** * ** * * * ** ** *** * * * *
consensus_10466#0 TGAAGTATTACTTGGTTCATTTGGTTTTTAAATGATCTAATTCGCAGGATCTTTATGGAC 719
consensus_10466#1 TCAGTTCACAACAGCAAAATCCAAATCTACTAGCAAATAATTAGTAATA-CTTTGTAAAC 428
* * * * * ** * * * * ***** * * * **** * **
consensus_10466#0 TACTAATTTCATATTTAAACAACCAATATTACC 752
consensus_10466#1 GTTTTAAATTAAGAACCAATAGTTGACTTG--- 458
* * * * ** * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||