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Schistosoma mansoni
cluster # 10468 cluster # 10468       Sequences # 16       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10468#0 length = 1477 sequences # 14  
consensus_10468#1 length = 490 sequences # 1  
consensus_10468#2 length = 395 sequences # 1  

consensusID : consensus_10468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1477
fasta sequence
                              [AAGGATGGAGTTGTTAAACTTAGAGAGAAGCTGACAAGCAGACAAAAACAAAGGCTTAAGAAGCGTTTCCTGAAATCTGATGAACCTGTTGAAAATAGAGTGTCTCGAAAGGTTTTCGAGCCGTCTGACAGCCTGCTTGAAAATGACGGTGACGAACTTATGGTTGATGATTTTGGACGTCTAACAGATTTAGAAGATGAAGACATTAAGACAAATACGGATCCTGTAGAACCTGTAGATGAAAATGAAGATATGATAACCAACCTCGCTTCCGAAGATGTGGTTGAAAAGTCTGTCATGGATTCCAGTACATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAAAACAGAGCACCTGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGAT-AAGCGACTTATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGACTTGTTTCCGAAAGAGATCGTTGAGGTTTTGGAAGCTAATGAAGTCGACAGACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAATTGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAGTTGGACTTGTTGTTTATTCATCACAAGTACCATTAGGCGCAACACCAGAGTATCTTGCCGGTCATTATATACTTCAGGGAGCTAGTTCTATGCTTCCTGTGATGGCCTTGTCTNCTCAGTTAGGCGAGCGTATCCTGGATTTGTGTGCTGCGCCGGGTGGGAAAACAACTTACATTGCACAGCTCATGAAAAATACCGGGACCATTTTTGCAAATGAAATAAACCCCAGTAGAGCCAAAGCGCTGCTTGGAAATTGCCATCGTATGGGTGTAACAAATACTGTCATCTGTACAGAAAATGGGCGAAAATTTCCAAAAATAATGTCGAACTTCGACCGAGTCCTCGTAGATGCACCGTGTTCTGGAACTGGTATCATCGCCAAAGATCCTTCTGTGAAAACCACCAAGAATAATGACGAGATTCAGAAGTGTGTAGAGTTGCAGAAAAGGTTACTTGTAGCTGCTATTGATTCCTGCAAAGTAGGAGGTTACGTGGTGTATTCCACATGCTCCATATTGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGC----ATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAACTGGAAATATGTAGATAAAGCACCTGGAGTACCAAGTCTTTGCTTTTGTTTGTGAATAATAAATTTAACCTAAGTTTAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CD156050             [AAGGATGGAGTTGTTAAACTTAGAGAGAAGCTGACAAGCAGACAAAAACAAAGGCTTAAGAAGCGTTTCCTGAAATCTGATGAACCTGTTGAAAATAGAGTGTCTCGAAAGGTTTTCGAGCCGTCTGACAGCCTGCTTGAAAATGACGGTGACGAACTTATGGTTGATGATTTTGGACGTCTAACAGATTTAGAAGATGAAGACATTAAGACAAATACGGATCCTGTAGAACCTGTAGATGAAAATGAAGATATGATAACCAACCTCGCTTCCGAAGATGTGGTTGAAAAGTCTGTCATGGATTCCAGTACATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAAAACAGAGCACCTGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGAT AAGCGACTTATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGACTTGTTTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD080671             [                                                                         AATCTGATGAACCTGTTGAAAATAGAGTGTCTCGAAAGGTTTTCGAGCCGTCTGACAGCCTGCTTGAAAATGACGGTGACGAACTTATGGTTGATGATTTTGGACGTCTATCAGATTTAGAAGATGAAGACATTAAGACAAATACGGATCCTGTAGAACCTGTAGATGAAAATGAAGATATGATAACCAACCTCGCTTCCGAAGATGTGGTTGAAAAGTCTGTCATGGATTCCAGTACATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAAAACAGAGCACCTGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGAT AAGCGACTTATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGACTTGTTTCCGAAAGAGATCGTTGAGGTTTTGGAAGCTAATGAAGTCGACAGACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAATTGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAGTTGGACTTGTTGTTTATTCATCACAAGTACCATTAGGCGCAACACCAGAGTATCTTGCCGGTCATTATATACTTCAGGGAGCTAGTTCTATGCTTCCTGTGATGGCCTTGTCTNCTCAGTTAGGCGAGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD077860             [                                                                                                                                                                                                 AAGATGAAGACATTAAGACAAATACGGATCCTGTAGAACCTGTAGATGAAAATGAAGATATGATAACCAACCTCGCTTCCGAAGATGTGGTTGAAAAGTCTGTCATGGATTCCAGTACATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAAAACAGAGCACCTGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGAT AAGCGACTTATGTTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD147722             [                                                                                                                                                                                                                                                         GATATGATAACCAACCTCGCTTCCGAAGATGTGGTTGAAAAGTCTGTCATGGATTCCAGTGCATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAAAACAGAGCACCTGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGAT AAGCGACTTATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGACTTGTTTCCGAAAGAGATCGTTGAGGTTTTGAAAGCTAATGAAGTCGACAGACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAATTGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAGTTGGACTTGTTGTTTATTCATCACAAGTACCATTAGGCGCAACACCAGAGTATCTTGCCGGTCATTATATACTTCAGGGAGCTAGTTCTATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD182692             [                                                                                                                                                                                                                                                                                                                                                                                                            GTTCG ACTCTGATAAAGCGACTTATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGACTGTTTTCCGAAAGAGATCGTTGAGGTTTTGGAAGCTAATGAAGTCGACAGACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAATTGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAGTTGGACTTGTTGTTTATTCATCACAAGTACCATTAGGCGCAACACCAGAGTATCTTGCCGGTCATTATATACTTCAGGGAGCTAGTTCTATGCTTCCTGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD078332             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCAAAGTTGGACTTGTTGTTTATTCATCACAAGTACCATTAGGCGCAACACCAGAGTATCTTGCCGGTCATTATATACTTCAGGGAGCTAGTTCTATGCTTCCTGTGATGGCCTTGTCTCCTCAGTTAGGCGAGCGTATCCTGGATTTGTGTGCTGCGCCGGGTGGGAAAACAACTTACATTGCACAGCTCATGAAAAATACCGGGACCATTTTTGCAAATGAAATAAACCCCAGTAGAGCCAAAGCGCTGCTTGGAAATTGCCATCGTATGGGTGTAACAAATACTGTCATCTGTACAGAAAATGGGCGAAAATTTCCAAAAATAATGTCGAACTTCGACCGAGTCCTCGTAGATGCACCGTGTTCTGGAACTGGTATCATCGCCAAAGATCCTTCTGTGAAAACCACCAAGAATAATGACGAGATTCAGAAGTGTGTAGAGTTGCAGAAAAGGTTACTTGTAGCTGCTATTGATTCCTGCAAAGTAGGAGGTTACGTGGTGTATTCCACATGCCTCAT                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD122675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGTATCCTGGATTTGTGTGCTGCGCCGGGTGGGAAAACAACTTACATTGCACAGCTCATGAAAAATACCGGGACCATTTTTGCAAATGAAATAAACCCCAGTAGAGCCAAAGCGCTGCTTGGAAATTGCCATCGTATGGGTGTAACAAATACTGTCATCTGTACAGAAAATGGGCGAAAATTTCCAAAAATAATGTCGAACTTCGACCGAGTCCTCGTAGATGCACCGTGTTCTGGAACTGGTATCATCGCCAAAGATCCTTCTGTGAAAACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD122655             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGTATCCTGGATTTGTGTGCTGCGCCGGGTGGGAAAACAACTTACATTGCACAGCTCATGAAAAATACCGGGACCATTTTTGCAAATGAAATAAACCCCAGTAGAGCCAAAGCGCTGCTTGGAAATTGCCATCGTATGGGTGTAACAAATACTGTCATCTGTACAGAAAATGGGCGAAAATTTCCAAAAATAATGTCGAACTTCGACCGAGTCCTCGTAGATGCACCGTGTTCTGGAACTGGTATCATCGCCAAAGATCCTTCTGTGAAAACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD074592             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAATACCGGGACCATTTTTGCAAATGAAATAAACCCCAGTAGAGCCAAAGCGCTGCTTGGAAATTGCCATCGTATGGGTGTAACAAATACTGTCATCTGTACAGAAAATGGGCGAAAATTTCCAAAAATAATGTCGAACTTCGACCGAGTCCTCGTAGATGCACCGTGTTCTGGAACTGGTATCATCGCCAAAGATCCTTCTGTGAAAACCCCCAAGAATAATGACGAGATTCAGAAGTGTGTAGAGTTGCAGAAAAGGTTACTTGTAGCTGCTATTGATTCCTGCAAAGTAGGAGGTTACGTGGTGTATTCCACATGCTCCATATTGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGC    ATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTTGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAACTGGAAATATGTAGATAAAGCACCTGGAGTACCAAGTCTTTGCTTTGGTTTGTGAATAATAAAaaaaa                              ]
[-] EMBL CD072890             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTGC TGGAAATTGCCATCGTATGGGTGTAACAAATACTGTCATCTGTACAGAAAATGGGCGAAAATTTCCAAAAATAATGTCGAACTTCGACCGAGTCCTCGTAGATGCACCGTGTTCTGGAACTGGTATCATCGCCAAAGATCCTTCTGTGAAAACCACCAAGAATAATGACGAGATTCAGAAGTGTGTAGAGTTGCAGAAAAGGTTACTTGTAGCTGCTATTGATTCCTGCAAAGTAGGAGGTTACGTGGTGTATTCCACATGCTCCATATTGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGC    ATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAACTGGAAATATGTAGATAAAGCACCTGGAGTACCAAGTCTTTGCTTTTGTTTGTGAATAATAAATTTAA                              ]
[-] EMBL CD169766             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTTGGAAATTGCCATCGTATGGGTGTAACAAATACTGTCATCTGTACAGAAAATGGGCGAAAATTTCCAAAAATAATGTCGAACTTCGACCGAGTCCTCGTAGATGCACCGTGTTCTGGAACTGGTATCATCGCCAAAGATCCTTCTGTGAAAACCACCAAGAATAATGACGAGATTCAGAAGTGTGTAGAGTTGCAGAAAAGGTTACTTGTAGCTGCTATTGATTCCTGCAAAGTAGGAGGTTACGTGGTGTATTCCACATGCTCCATATTGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGCGTAGATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTC                                                                                                                                                                                                      ]
[+] EMBL CD181090             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGAGATTCAGAAGTGTGTAGAGTTGCAGAAAAGGTTACTTGTAGCTGCTATTGATTCCTGCAAAGTAGGAGGTTACGTGGTGTATTCCACATGCTCCATATTGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGC    ATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAACTGGAAATATGTA                                                                                     ]
[-] EMBL AI395225             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGTTAC TGTAGCTGCTATTGATTCCTGCAAAGTAGGA GTTACGTGGTGTATTCCACATGCTCCATATTGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGC    ATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAACTGGAAATATGTAGATAAAGCACCTGGAGTACCAAGTCTTTGCTTTTGTTTGTGAATAATAAATTTAACCTAAGTTTAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395356             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AACTGTTTGGGGAAAAGGGTTTCACTGCGTAGATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAACTGGAAATATGTAGATAAAGCACCTGGAGTACCAAGTCTTTGCTTTTGTTTGTGAATAATAAATTTAACCTAAGTTTAAAAAAAAAAAAA        ]


>consensus_10468#0 AAGGATGGAGTTGTTAAACTTAGAGAGAAGCTGACAAGCAGACAAAAACAAAGGCTTAAG AAGCGTTTCCTGAAATCTGATGAACCTGTTGAAAATAGAGTGTCTCGAAAGGTTTTCGAG CCGTCTGACAGCCTGCTTGAAAATGACGGTGACGAACTTATGGTTGATGATTTTGGACGT CTAACAGATTTAGAAGATGAAGACATTAAGACAAATACGGATCCTGTAGAACCTGTAGAT GAAAATGAAGATATGATAACCAACCTCGCTTCCGAAGATGTGGTTGAAAAGTCTGTCATG GATTCCAGTACATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAA AACAGAGCACCTGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGATAAGCGACTTA TGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGACTTGTTTCCGAAA GAGATCGTTGAGGTTTTGGAAGCTAATGAAGTCGACAGACCAGTGACCATACGCACAAAT ACCTTAAAAACCCGTCGGAGGGAATTGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTT GATCCTTTGGAACCGTGGAGCAAAGTTGGACTTGTTGTTTATTCATCACAAGTACCATTA GGCGCAACACCAGAGTATCTTGCCGGTCATTATATACTTCAGGGAGCTAGTTCTATGCTT CCTGTGATGGCCTTGTCTNCTCAGTTAGGCGAGCGTATCCTGGATTTGTGTGCTGCGCCG GGTGGGAAAACAACTTACATTGCACAGCTCATGAAAAATACCGGGACCATTTTTGCAAAT GAAATAAACCCCAGTAGAGCCAAAGCGCTGCTTGGAAATTGCCATCGTATGGGTGTAACA AATACTGTCATCTGTACAGAAAATGGGCGAAAATTTCCAAAAATAATGTCGAACTTCGAC CGAGTCCTCGTAGATGCACCGTGTTCTGGAACTGGTATCATCGCCAAAGATCCTTCTGTG AAAACCACCAAGAATAATGACGAGATTCAGAAGTGTGTAGAGTTGCAGAAAAGGTTACTT GTAGCTGCTATTGATTCCTGCAAAGTAGGAGGTTACGTGGTGTATTCCACATGCTCCATA TTGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTA GAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGCATTCAAAGGCTATCAGTTCCAC CCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTC GTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAAC TGGAAATATGTAGATAAAGCACCTGGAGTACCAAGTCTTTGCTTTTGTTTGTGAATAATA AATTTAACCTAAGTTTAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence
                              [ATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAAAACAGAGCACCTGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGATAAGCGACTTATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGGCTTGTTTCCGAAAGAGGTAATAAATATTGGAACTCAAATTCAGTCGCAGATCGTTGAGGTTTTGGAAGCTAATGAAGTCGACAGACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAATTGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAGTTGGACTTGTTGTTTATTCATCACAAGTGCCATTAGGCGCCACACCAGAGTATCTTGCCGGTCATTATATACTTCAGGGAGCTAGTTTTATGCTTCCTGTGATGGCCCTGTCTCCTCAGTTAGGCGAGAGTATCCTGGATTTG]

[-] EMBL CD190058             [ATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAAAACAGAGCACCTGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGATAAGCGACTTATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGGCTTGTTTCCGAAAGAGGTAATAAATATTGGAACTCAAATTCAGTCGCAGATCGTTGAGGTTTTGGAAGCTAATGAAGTCGACAGACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAATTGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAGTTGGACTTGTTGTTTATTCATCACAAGTGCCATTAGGCGCCACACCAGAGTATCTTGCCGGTCATTATATACTTCAGGGAGCTAGTTTTATGCTTCCTGTGATGGCCCTGTCTCCTCAGTTAGGCGAGAGTATCCTGGATTTG]


>consensus_10468#1 ATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAAAACAGAGCACC TGCAGACCTCAATAGGAGTTTGTGTGTTCGAACTCTGATAAGCGACTTATGTTCTCGTTA TTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGGCTTGTTTCCGAAAGAGGTAATAAA TATTGGAACTCAAATTCAGTCGCAGATCGTTGAGGTTTTGGAAGCTAATGAAGTCGACAG ACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAATTGGCTCAAGCTTT AATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAGTTGGACTTGTTGT TTATTCATCACAAGTGCCATTAGGCGCCACACCAGAGTATCTTGCCGGTCATTATATACT TCAGGGAGCTAGTTTTATGCTTCCTGTGATGGCCCTGTCTCCTCAGTTAGGCGAGAGTAT CCTGGATTTG



consensusID : consensus_10468#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence
                              [TTTCGAAGTACGAGATATTTTCGTACGTGAACGTCATGTTTATATATAATTATGTTCCATGTTTTACATTGAAAGTATTGACATTACTGCGCATATTATCTTTTTGTTTCTGTCTAACAAGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGCGTAGGTGAGTGTTCACTAAAGTATAATTATCTCCACAGATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAA]

[+] EMBL CD135242             [TTTCGAAGTACGAGATATTTTCGTACGTGAACGTCATGTTTATATATAATTATGTTCCATGTTTTACATTGAAAGTATTGACATTACTGCGCATATTATCTTTTTGTTTCTGTCTAACAAGGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGCGTAGGTGAGTGTTCACTAAAGTATAATTATCTCCACAGATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAGCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAA]


>consensus_10468#2 TTTCGAAGTACGAGATATTTTCGTACGTGAACGTCATGTTTATATATAATTATGTTCCAT GTTTTACATTGAAAGTATTGACATTACTGCGCATATTATCTTTTTGTTTCTGTCTAACAA GGTAGAAGAAAATGAGAACGTTGTAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGA GGAGACGAAACTGTTTGGGGAAAAGGGTTTCACTGCGTAGGTGAGTGTTCACTAAAGTAT AATTATCTCCACAGATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGT TTTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCA GCGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10468#0      AAGGATGGAGTTGTTAAACTTAGAGAGAAGCTGACAAGCAGACAAAAACAAAGGCTTAAG 60
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      AAGCGTTTCCTGAAATCTGATGAACCTGTTGAAAATAGAGTGTCTCGAAAGGTTTTCGAG 120
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      CCGTCTGACAGCCTGCTTGAAAATGACGGTGACGAACTTATGGTTGATGATTTTGGACGT 180
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      CTAACAGATTTAGAAGATGAAGACATTAAGACAAATACGGATCCTGTAGAACCTGTAGAT 240
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      GAAAATGAAGATATGATAACCAACCTCGCTTCCGAAGATGTGGTTGAAAAGTCTGTCATG 300
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      GATTCCAGTACATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAA 360
consensus_10468#1      -----------ATTGAACCAACGCATTCGGAACTGGCTCTATATCCTATCCGATTTCAAA 49
consensus_10468#2      -----------------------------------------------------TTTCGAA 7
                                                                            **** **

consensus_10468#0      A-ACAGAGCACCTGCAGACCTCAATAGGA-GTTTGTGTGTTCGAACTCTGATAAGCGACT 418
consensus_10468#1      A-ACAGAGCACCTGCAGACCTCAATAGGA-GTTTGTGTGTTCGAACTCTGATAAGCGACT 107
consensus_10468#2      GTACGAGATATTTTCGTACGTGAACGTCATGTTTATATAT---AATTATGTTCCATGTTT 64
                         **     *  * *  ** * **    * **** * * *   ** * ** *    *  *

consensus_10468#0      TATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGACTTGTTTCCGA 478
consensus_10468#1      TATGTTCTCGTTATTCGTACAATCAGTTTCTTATGGTGAAACTTCTTGGCTTGTTTCCGA 167
consensus_10468#2      TACATTGAAAGTATTGACATTACTG----CGCATATT---ATCTTTTTGTTTCTGTCTAA 117
                       **  **     ****   *  *       *  **  *   *  * **   ** * **  *

consensus_10468#0      AAGAG---------------------------------ATCGTTGAGGTTTTGGAAGCTA 505
consensus_10468#1      AAGAGGTAATAAATATTGGAACTCAAATTCAGTCGCAGATCGTTGAGGTTTTGGAAGCTA 227
consensus_10468#2      CAAGG---------------------------TAGAAGAAAATGAGAACGTTGTAAACT- 149
                        *  *                                 *   *       *** ** ** 

consensus_10468#0      ATGAAGTCGACAGACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAAT 565
consensus_10468#1      ATGAAGTCGACAGACCAGTGACCATACGCACAAATACCTTAAAAACCCGTCGGAGGGAAT 287
consensus_10468#2      -TTGCGTTAA--GACGAAGAAAAGTACGTTTAGAGGAGACGAAA-CTGTTTGGGGAAAAG 205
                        *   **  *  *** *   *   ****   * *       *** *   * ** *  ** 

consensus_10468#0      TGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAG 625
consensus_10468#1      TGGCTCAAGCTTTAATAAATCGTGGTGTGAACCTTGATCCTTTGGAACCGTGGAGCAAAG 347
consensus_10468#2      GGTTTCACTGCGTAGGTGAGTGTTCACTAAAGTATAATTATCT----CCACAGATTCAAA 261
                        *  ***     **    *  **    * **   * **  * *    **   **   ** 

consensus_10468#0      TTGGACTTGTTGTTTATTCATCACAAGTACCATTAGGCGCAACACCAGAGTATCTTGCCG 685
consensus_10468#1      TTGGACTTGTTGTTTATTCATCACAAGTGCCATTAGGCGCCACACCAGAGTATCTTGCCG 407
consensus_10468#2      GGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTTTTTACCCGCACAAGCACAAT 321
                           *   ***       ***   * *  *  *          *** *   *        

consensus_10468#0      GTCATTATATACTTCAGGGAGCTAGTTCTATGCTTCCTGTGATGGCCTTGTCTNCTCAGT 745
consensus_10468#1      GTCATTATATACTTCAGGGAGCTAGTTTTATGCTTCCTGTGATGGCCCTGTCTCCTCAGT 467
consensus_10468#2      GTCGACGGATTTTTCGTGGCAAAA-----ATGAAGAAAATGGCAGCGACGGTTACA-AGG 375
                       ***     **  ***  **    *     ***       **   **   *  * *  ** 

consensus_10468#0      TAGGCGAGCGTATCCTGGATTTGTGTGCTGCGCCGGGTGGGAAAACAACTTACATTGCAC 805
consensus_10468#1      TAGGCGAGAGTATCCTGGATTTG------------------------------------- 490
consensus_10468#2      AAGAAGGAAGTTCCTTGAAA---------------------------------------- 395
                        **  *   **  * ** *                                         

consensus_10468#0      AGCTCATGAAAAATACCGGGACCATTTTTGCAAATGAAATAAACCCCAGTAGAGCCAAAG 865
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      CGCTGCTTGGAAATTGCCATCGTATGGGTGTAACAAATACTGTCATCTGTACAGAAAATG 925
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      GGCGAAAATTTCCAAAAATAATGTCGAACTTCGACCGAGTCCTCGTAGATGCACCGTGTT 985
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      CTGGAACTGGTATCATCGCCAAAGATCCTTCTGTGAAAACCACCAAGAATAATGACGAGA 1045
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      TTCAGAAGTGTGTAGAGTTGCAGAAAAGGTTACTTGTAGCTGCTATTGATTCCTGCAAAG 1105
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      TAGGAGGTTACGTGGTGTATTCCACATGCTCCATATTGGTAGAAGAAAATGAGAACGTTG 1165
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      TAAACTTTGCGTTAAGACGAAGAAAAGTACGTTTAGAGGAGACGAAACTGTTTGGGGAAA 1225
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      AGGGTTTCACTGCATTCAAAGGCTATCAGTTCCACCCACATATGACGCGCGTTCGACGTT 1285
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      TTTACCCGCACAAGCACAATGTCGACGGATTTTTCGTGGCAAAAATGAAGAAAATGGCAG 1345
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      CGACGGTTACAAGGAAGAAGGAAGTTCCTTGAAACTGGAAATATGTAGATAAAGCACCTG 1405
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      GAGTACCAAGTCTTTGCTTTTGTTTGTGAATAATAAATTTAACCTAAGTTTAAAAAAAAA 1465
consensus_10468#1      ------------------------------------------------------------
consensus_10468#2      ------------------------------------------------------------
                                                                                   

consensus_10468#0      AAAAAAAAAAAA 1477
consensus_10468#1      ------------
consensus_10468#2      ------------
                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)