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Schistosoma mansoni
cluster # 10477 cluster # 10477       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10477#0 length = 1334 sequences # 10  
consensus_10477#1 length = 1034 sequences # 6  
consensus_10477#2 length = 684 sequences # 1  

consensusID : consensus_10477#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1334
fasta sequence
                              [ACCGCTGTATTCAGGCATTTTGGTTGATGGCGATTGTGGAGGCGAGTCACAATACTAACGCACACCTTGAAGAGAGTCTACCAAACTACCAGGTTGAACTAGACACCACAGAAGAAAATTATGTAGATTCATACGGATCTACTTGTGTTCGTTGTGGCGATCCCTTTCAACTAAATGAAAAAGTTGTGCAGACAAAAGATAGCAGTTACCACGTTAAGTGTTTTGTCTGTGTACAGTGTTTTCAACCATTCCCGGAAGGCGTTTATTATGAATTTGATGGCCGAAAATACTGTGAACATGACTTTCACGTTTTATTTGCGCCATGTTGTGGAAAGTGTGGATGTTTCATAATTGGCAGGGTAATAAAGGCAATGAATTATAACTGGCATCCTGATTGTTACCGTTGTCACATATGTGATAAGTGTCTTGCAGATGAGGGGTTTGTCAAATTACATGGAAGAGCTGTTTGCCATGCGTGTAATGAACACGAAAAAGCGTCTGGTTTGTCATACATCACATGTCACAAATGCCGAGCTGTTGTGGAAGAAGGACAACAGTTAAAGTATCGCTCTGAAGTATATCATGCATATCACTTTTCATGTGCATCCCGTGGTTCTGAACTTTCTTCTGATGCCCGAGAAAAGGATGGAGATTTGTACTGTCTTCGCTGTCACGATAAAATGGGAATACCCATATGTGGTGCTTGTAGACGCCCTATTGAAGAAAGAGTTGTTCATGCTTTAGGAAAAACATGGCATGTGGAACACTTTGTTTGTGCCCGATGTGAAAAACCGTTTTTAGGTTCTCGCCATTATGAGAAGAAAGGCTTAGCATACTGTGAACTACACTATCAGTTGTTGTTCGGAATGCTGTGCTATTCTTGTAATCAGGTAATACCTGGGGAAACAGTGTATGCATTAAATAAGGCTTGGTGTGTAGATCATTTCGGGTGTAGCGTGTGTGACAGACGCCTCAGTCCGAAAACCAAGTTTTATGAATTCGACTACAAGCCGGTTTGCAAATCTTGTTATGAGCTGTTCCCCATGGAATTACGTAAACGTATTGCGAAAATGCACAAAATGGAGGACTAACCCAAAAATTAAATTCGGTTTTATGATAAATTTGAACCTACCAACTCACTTTTACTGCGCTTCTGTTACTTTACTATCTTTGACTATGTTTTGCATCTTAACTTTTGGTTTGCCTAAAATTGTAACTGGGTTCATTGCTATATTAATCAACAAACTAAAATAAAACACAAAAGTGCGCATTTATTTTTATGACAGATATGAACATTGAGAATTAATCACTAAAATATTATGTGACTAGACGGT]

[+] EMBL CD131832             [ACCGCTGTATTCAGGCATTTTGGTTGATGGCGATTGTGGAGGCGAGTCACAATACTAACGCACACCTTGAAGAGAGTCTACCAAACTACCAGGTTGAACTAGACACCACAGAAGAAAATTATGTAGATTCATACGGATCTACTTGTGTTCGTTGTGGCGATCCCTTTCAACTAAATGAAAAAGTTGTGCAGACAAAAGATAGCAGTTACCACGTTAAGTGTTTTGTCTGTGTACAGTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD188305             [                                                                                                                                                       TTGTGGCGATCCCTTTCAACTAAATGAAAAAGTTGTGCAGACAAAAGATAGCAGTTACCACGTTAAGTGTTTGGTCTGTGTACAGTGTTTTCAACCATTCCCGGAAGGCGTTTATTATGAATTTGATGGCCGAAAATACTGTGAACATGACTTTCACGTTTTATTTGCGCCATGTTGTGGAAAGTGTGGATGTTTCATAATTGGCAGGGTAATAAAGGCAATGAATTATAACTGGCATCCTGATTGTTACCGTTGTCACATATGTGATAAGTGTCTTGCAGATGAGGGGTTTGTCAAATTACATGGAAGAGCTGTTTGCCATGCGTGTAATGAACACGAAAAAGCGTCTGGTTTGTCATACATCACATGTCACAAATGCCGAGCTGTTGTGGAAGAAGGACAACAGTTAAAGTATCGCTCTGAAGTATATCATGCATATCACTTTTCATGTGCATCCCGTGGTTCTGAACTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD116965             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TAATGAACACGAAAAAGCGTCTGGTNTGTCATACATCACATGTCACAAATGCCGAGCTGTTGTGGAAGAAGGACAACAGTTAAAGTATCGCTCTGAAGTATATCATGCATATCACTTTTCATGTGCATCCTGTGGTTCTGAACTTTCTTCTGATGCCCGAGAAAAGGATGGAGATTTGTACTGTCTTCGCTGTCACGATAAAATGGGAATACCCATATGTGGTGCTTGTAGACGCCCTATTGAAGAAAGAGTTGTTCATGCTTTAGGAAAAACATGGCATGTGGAACACTTTGTTTGTGCCCGATGTGAAAAACCGTTTTTAGGTTCTCGCCATTATGAGAAGAAAGGCTTAGCATACTGTGAACTACACTATCAGTTGTTGTTCGGAATGCTGTGCTATTCTTGTAATCAGGTAATACCTGGGGAAACAGTGTATGCATTAAATAAGGCTTGGTGTGTAGATCATTTCGGGTGTAGCGTGTGTGACAGACGCCTCAGTCCGAAAACCAAGTTTTATGAATTCGACTACAAGCCGGTTTGCAAATCTTGTTATGAGCTGTTCCCCATGGAATTACGTAAACGTATTGCGAAAATGCACAAAATGGAGGACTAACCCAAAAATTAAATTCGGTTTTATGA                                                                                                                                                                                                                         ]
[+] EMBL CD078228             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAAAAGGATGGAGATTTGTACTGTCTTCGCTGTCACGATAAAATGGGAATACCCATATGTGGTGCTTGTAGACGCCCTATTGAAGAAAGAGTTGTTCATGCTTTAGGAAAAACATGGCATGTGGAACACTTTGTTTGTGCCCGATGTGAAAAACCG TTTTAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD158557             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCTGTCACGATAAAATGGGAATACCCATATGTGGTGCTTGTAGACGCCCTATTGAAGAAAGAGTTGTTCATGCTTTAGGAAAAACATGGCATGTGGAACACTTTGTTTGTGCCCGATGTGAAAAACCGTTTTTAGGTTCTCGCCATTATGAGAAGAAAGGCTTAGCATACTGTGAACTACACTATCAGTTGTTGATCGGAAAGCTGTGCTATTCTTGTAATCAGGTAATACCTGGGGAAACAGTGTATGCATTAAATAAGGCTTGGTGTGTAGATCATTTCGGGTGTAGCGTGTGTGACAGACGCCTCAGTCCGAAAACCAAGTTTTATGAA                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AW017114             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGTGGAACACTTTGTTTGTGCCCAATGTGAAAAACCGTTTTTAGGTTCTCGCCATTATGAGAAGAAAGGCTTAGCATACTGTGAACTACACTATCAGTTGTTGTTCGAAATGCTGTGCTATTCTTGTAATCAGGTAATACCTGGGGAAACAGTGTATGCATTAAATAAGGCTTGGTGTGTAGATCATTTCGGGTGTAGCGTGTGTGACAAACGCCTCAGTCCGAAAACCAAGTTTTATGAATTCGACTACAAGCCGGTTTGCAAATCTTGTTATGAGCTGTTCCCCATGGAATTACGTAAACGTATTGCGAAAATGCACAAAATGGAGGACTAACCCAAAAATTAAATTCGGTTTTATGATAAATTTGAACCTACCAACTCACTTTTACTGCGCTTCTGTTACTTTACTATCTTTGACTATGTTTTGCATCTTAACTTTTGGTTTGCCTAAAATTGTAACTGGGTTCATTGCTATATTAATCAACAAACTAAA                                                                                    ]
[-] EMBL CD119501             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTCTATGAATTCGACTACAAGCCGGTTTGCAAATCATGTTAAGAGCTGTTCCCCATGGAATTACGTAAACGTATGTCGAAAATGCACAAAATGCAGGACTAACCCAAAAAGTAAATTCGGTTTTATGATAAATTTGAACCTACCGACTCACTTTTACTGCGCTTCTGTTACTTTACTATCTTTGCCTATGTTTTGCATCTTAACTTCTGGTATGCCTAAAATTGTAACTGGGTTCATTGCTATATTAATCAACAAACTAAAATAAAACCCAAAAGTGCGCATTTATTTTTATGACAGATATGAACATTGAGAATTAATCACTAAAATA                 ]
[-] EMBL CD119558             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTTTATGAATTCGACTACAAGCNNGNTTGCAAATCTTGTTATGAGCTGTTCCCCATGGAATTACGTAAACGTATTGCGAAAATGCACAAAATGGAGGACTAACCCAAAAATTAAATTCGGTTTTATGATAAATTTGAACCTACCAACTCACTTTTACTGCGCTTCTGTTACTTTACTATCTTTGACTATGTTTTGCATCTTAACTTTTGGTTTGCCTAAAATTGTAACTGGGTTCATTGCTATATTAATCAACAAACTAAAATAAAACACAAAAGTGCGCATTTATTTTTATGACAGATATGAACATTGAGAATTAATCACTAAAATA                 ]
[-] EMBL CD119401             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTCNNCATGGAATTACGTAAACGTATTGCGAAAATGCACAAAATGGAGGACTAACCCAAAAATTAAATTCGGTTTTATGATAAATTTGAACCTACCAACTCACTTTTACTGCGCTTCTGTTACTTTACTATCTAAGACTATGTTTTGCATAAAAACTTTTGGTTTGCCTAAAATTGTAACTGGGTTCATTGCTATATTAATCAACAAACTAAAATAAAACACAAAAGTGCGCATTTATTTTTATGACAGATATGAACATTGAGAATTAATCACTAAAATATTATGTGACTAGACGGT]
[-] EMBL AI977093             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACGTATTGCGAAAATGCACAAAATGGAGGACTAACCCAAAAATTAAATTCGGTTTTATGATAAATTTGAACCTACCAACTCACTTTTACTGCGCTTCTGTTACTTTACTATCTTTGACTATGTTTTGCATCTTAACTTTTGGTTTGCCTAAAATTGTAACTGGGTTCATTGCTATATTAATCAACAAACTAAA                                                                                    ]


>consensus_10477#0 ACCGCTGTATTCAGGCATTTTGGTTGATGGCGATTGTGGAGGCGAGTCACAATACTAACG CACACCTTGAAGAGAGTCTACCAAACTACCAGGTTGAACTAGACACCACAGAAGAAAATT ATGTAGATTCATACGGATCTACTTGTGTTCGTTGTGGCGATCCCTTTCAACTAAATGAAA AAGTTGTGCAGACAAAAGATAGCAGTTACCACGTTAAGTGTTTTGTCTGTGTACAGTGTT TTCAACCATTCCCGGAAGGCGTTTATTATGAATTTGATGGCCGAAAATACTGTGAACATG ACTTTCACGTTTTATTTGCGCCATGTTGTGGAAAGTGTGGATGTTTCATAATTGGCAGGG TAATAAAGGCAATGAATTATAACTGGCATCCTGATTGTTACCGTTGTCACATATGTGATA AGTGTCTTGCAGATGAGGGGTTTGTCAAATTACATGGAAGAGCTGTTTGCCATGCGTGTA ATGAACACGAAAAAGCGTCTGGTTTGTCATACATCACATGTCACAAATGCCGAGCTGTTG TGGAAGAAGGACAACAGTTAAAGTATCGCTCTGAAGTATATCATGCATATCACTTTTCAT GTGCATCCCGTGGTTCTGAACTTTCTTCTGATGCCCGAGAAAAGGATGGAGATTTGTACT GTCTTCGCTGTCACGATAAAATGGGAATACCCATATGTGGTGCTTGTAGACGCCCTATTG AAGAAAGAGTTGTTCATGCTTTAGGAAAAACATGGCATGTGGAACACTTTGTTTGTGCCC GATGTGAAAAACCGTTTTTAGGTTCTCGCCATTATGAGAAGAAAGGCTTAGCATACTGTG AACTACACTATCAGTTGTTGTTCGGAATGCTGTGCTATTCTTGTAATCAGGTAATACCTG GGGAAACAGTGTATGCATTAAATAAGGCTTGGTGTGTAGATCATTTCGGGTGTAGCGTGT GTGACAGACGCCTCAGTCCGAAAACCAAGTTTTATGAATTCGACTACAAGCCGGTTTGCA AATCTTGTTATGAGCTGTTCCCCATGGAATTACGTAAACGTATTGCGAAAATGCACAAAA TGGAGGACTAACCCAAAAATTAAATTCGGTTTTATGATAAATTTGAACCTACCAACTCAC TTTTACTGCGCTTCTGTTACTTTACTATCTTTGACTATGTTTTGCATCTTAACTTTTGGT TTGCCTAAAATTGTAACTGGGTTCATTGCTATATTAATCAACAAACTAAAATAAAACACA AAAGTGCGCATTTATTTTTATGACAGATATGAACATTGAGAATTAATCACTAAAATATTA TGTGACTAGACGGT



consensusID : consensus_10477#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1034
fasta sequence
                              [CATGGAAATCGATGAATTGCGCGTTTCTGTAGGACAAAATAAAGTGGTAGACGATCCACCAACAAATATAAAGCCTGAGTTGCATGTAGATCCTATGGGCGTCCCAACGGAATGTGTAGAAAAGGAGGATGGGAATCTGGAGCACTTACAAAACACAAATGCTAGAGTTAGCCATCGTTTTATGTTCAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAAATGAACAGCGTGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCTTCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGGATATACACAATGACCCTCACTATGCAATTGTAAATGAGCCATTTAAGGATGAAACTCAGAAAGCCAACTTTTTGGAAATTAAGAACCGCTTTTTGGCTCGCCGCTTCAAACTTTTAGAACAAGCTCTAATAATCGAAGAGCAACTTCGTCGAGCAGCCCTTCT-AATATAGCAGCAGACCAGTCCGAGCACATACAAAGCTTGAACAGACGATNTACAGAACTTGAATGTTNGGCTACAGGACAACTTCACTTATTC-AATGATGCACTTGCCGG--AAACAAAGCTTTAGTACCATTGCTACA-CAAAGTGTTAACACTTATGGAAGACATCCTGGTTGACATGAAACAAGACGTTGCCCGACTGGTCAATTTATTACCTCGATTGCCTCCGGTCACTCAGCGCTTACAGCTCAGTCATACAGGACTCCTTGGGAAGCTTACACAACAACTCACTGCCAACAAAAACGCTCAGTCGGTACAGGCTCCTAAACAGACCGAAGTTAAAGAAGAGAGTGTGAATCTTGCCACACCAACTTCGGAAAACCAGCAGCCATAACCAAGGTCTTTCCCTTGAAAAACTTGTATAGTTNTCTCTTCTCAGTCACATAATATTNTAGTGATTAATTCTCAATGTTCATATCTGTCATAAAAATAAATGCGCACTTTTGTGTTTTTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CD194516             [CATGGAAATCGATGAATTGCGCGTTTCTGTAGGACAAAATAAAGTGGTAGACGATCCACCAACAAATATAAAGCCTGAGTTGCATGTAGATCCTATGGGCGTCCCAACGGAATGTGTAGAAAAGGAGGATGGGAATCTGGAGCACTTACAAAACACAAATGCTAGAGTTAGCCATCGTTTTATGTTCAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAAATGAACAGCGTGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCTTCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGGATATACACAATGACCCTCACTATGCAATTGTAAATGAGCCATTTAAGGATGAAACTCAGAAAGCCAACTTTTTGGAAATTAAGAACCGCTTTTTGGCTCGCCGCTTCAAACTTTTAGAACAAGCTCTAATAATCGAAGAGCAACTTCGTCGAGCAGCCCTTCT AATATAGCAGCAGACCAGTCCGAGCACATACAAAGCTTGAACAGACGATNTACAGAACTTGAATGTTNGGCTACAGGACAACTTCACTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BG931158             [                                                                                                     gtCCAACAGATTGTGTGGAATAGGAGGATGGGAATCTGGAGCACTTACAAAACACAAATGCTAGAGTTAGCCATCGTATTATGTTCAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAAATGAACAGCGTGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCTTCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGGATATACACAATGACCCTCACTATGCAATTGTGAATGAGCCATCTAAGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD182933             [                                                                                                                                                                       TTAGCCATCGTNNTATGTTCAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAAATGAACAGCGTGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCTTCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGGATATACACAATGACCCTCACTATGCAATTGTAAATGAGCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BG931111             [                                                                                                                                                                            CATCGTTTTATGTTCAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAAATGAACAGCGTGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCTTCTGCCTGGTGTAGTACAACATGGATATGCCAGATGGCAGGATATACACAATGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AI977396             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTCAAACTTTTAGAACAAGCTCTAATAATCGAAGAGCAACTTCGTCGAGCAGCCCTTCTAAATATAGCAGCAGACCAGTCCGAGCACATACAAAGCTTGAACAGACGATTTACAGAACTTGAATGTTTGGCTACAGGACAACTTCACTTATTC AATGATGCACTTGCCGG  AAACAAAGCTTTAGTACCATTGCTACA CAAAGTGTTAACACTTATGGAAGACATCCTGGTTGACATGAAACAAGACGTTGCCCGACTGGTCAATTTATTACCTCGATTGCCTCCGGTCACTCAGCGCTTACAGCTCAGTCATACAGGACTCCTTGGGAAGCTTACACAACAACTCACTGCCAACAAAAACGCTCAGTCGGTACAGGCTCCTAAACAGACCGAAGTTAAAGAAGAGAGTGTGAATCTTGCCACACCAACTTCGGAAAACCAGCAGCCATAACCAAGGTCTTTCCCTTGAAAAACTTGTATAGTTNTCTCTTCTCAGTCACATAATATTNTAGTGATTAATTCTCAATGTTCA                                                           ]
[-] EMBL AI395648             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTCACTTATCCAAATGATGCACTTGCCGGGAAAACAAAGCTTTAGTACCATTGCTACACCAAAGTGTTAACACTTATGGAAGACATCCTGGTTGACATGAAACAAGACGTTGCCCGACTGGTCAATTTATTACCTCGATTGCCTCCGGTCACTCAGCGCTTACAGCTCAGTCATACAGGACTCCTTGGGAAGCTTACACAACAACTCACTGCCAACAAAAACGCTCAGTCGGTACAGGCTCCTAAACAGACCGAAGTTAAAGAAGAGAGTGTGAATCTTGCCACACCAACTTCGGAAAACCAGCAGCCATAACCAAGGTCTTTCCCTTGAAAAACTTGTATAGTTTTCTCTTCTCAGTCACATAATATTTTAGTGATTAATTCTCAATGTTCATATCTGTCATAAAAATAAATGCGCACTTTTGTGTTTTTAAAAAAAAAAAAAAAAAAAAA]


>consensus_10477#1 CATGGAAATCGATGAATTGCGCGTTTCTGTAGGACAAAATAAAGTGGTAGACGATCCACC AACAAATATAAAGCCTGAGTTGCATGTAGATCCTATGGGCGTCCCAACGGAATGTGTAGA AAAGGAGGATGGGAATCTGGAGCACTTACAAAACACAAATGCTAGAGTTAGCCATCGTTT TATGTTCAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAAATGAACA GCGTGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCT TCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGGATATACACAATGACCCTCA CTATGCAATTGTAAATGAGCCATTTAAGGATGAAACTCAGAAAGCCAACTTTTTGGAAAT TAAGAACCGCTTTTTGGCTCGCCGCTTCAAACTTTTAGAACAAGCTCTAATAATCGAAGA GCAACTTCGTCGAGCAGCCCTTCTAATATAGCAGCAGACCAGTCCGAGCACATACAAAGC TTGAACAGACGATNTACAGAACTTGAATGTTNGGCTACAGGACAACTTCACTTATTCAAT GATGCACTTGCCGGAAACAAAGCTTTAGTACCATTGCTACACAAAGTGTTAACACTTATG GAAGACATCCTGGTTGACATGAAACAAGACGTTGCCCGACTGGTCAATTTATTACCTCGA TTGCCTCCGGTCACTCAGCGCTTACAGCTCAGTCATACAGGACTCCTTGGGAAGCTTACA CAACAACTCACTGCCAACAAAAACGCTCAGTCGGTACAGGCTCCTAAACAGACCGAAGTT AAAGAAGAGAGTGTGAATCTTGCCACACCAACTTCGGAAAACCAGCAGCCATAACCAAGG TCTTTCCCTTGAAAAACTTGTATAGTTNTCTCTTCTCAGTCACATAATATTNTAGTGATT AATTCTCAATGTTCATATCTGTCATAAAAATAAATGCGCACTTTTGTGTTTTTAAAAAAA AAAAAAAAAAAAAA



consensusID : consensus_10477#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence
                              [TCTTTAGCCTGAGTTGCATGTAGATCCTATGGGCGTTCCAACAGAATGTGTAGAAAAGGAGAATGGGAATCTGGAGCACTTACAAAACACAAATGCTAGAGTTAGCCATCGTTTTATGTTCAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAGATGAACAGCGTGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCTTCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGGTACGTGTACACTTTTTGTTCAATTTTTTGAAAACCGCTTTGTTAGATATTCATGATAAGAACAATTGTAGTCAGATTCTGAGTCATACTAAACGTAGTAATTAGTTCCCCATTATTTCGCCATTGTTTGGGATTGTATAATGCAATCTGAAACTAAGTCATTTAACTTGGTAGACGAACCTGTTTCATGATAATGCTAATCTAGAAACACATTATTACTACTTTGTCTTTGGAATACTCAGATTGTACAAGTTATTTCCATGTGTACTTATTAGGTTAGATTCNGTTTAGGAAGTAGTGAACTCAAAACACTGCTCCACTTTTGTTNAAGTGGTCTNCAATTGAGTGACCCTACACAAAGAGATCTTACCGATATTGTACATAGTGGTCAACACAAAAAGTGATTGAGA]

[+] EMBL CD093991             [TCTTTAGCCTGAGTTGCATGTAGATCCTATGGGCGTTCCAACAGAATGTGTAGAAAAGGAGAATGGGAATCTGGAGCACTTACAAAACACAAATGCTAGAGTTAGCCATCGTTTTATGTTCAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAGATGAACAGCGTGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCTTCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGGTACGTGTACACTTTTTGTTCAATTTTTTGAAAACCGCTTTGTTAGATATTCATGATAAGAACAATTGTAGTCAGATTCTGAGTCATACTAAACGTAGTAATTAGTTCCCCATTATTTCGCCATTGTTTGGGATTGTATAATGCAATCTGAAACTAAGTCATTTAACTTGGTAGACGAACCTGTTTCATGATAATGCTAATCTAGAAACACATTATTACTACTTTGTCTTTGGAATACTCAGATTGTACAAGTTATTTCCATGTGTACTTATTAGGTTAGATTCNGTTTAGGAAGTAGTGAACTCAAAACACTGCTCCACTTTTGTTNAAGTGGTCTNCAATTGAGTGACCCTACACAAAGAGATCTTACCGATATTGTACATAGTGGTCAACACAAAAAGTGATTGAGA]


>consensus_10477#2 TCTTTAGCCTGAGTTGCATGTAGATCCTATGGGCGTTCCAACAGAATGTGTAGAAAAGGA GAATGGGAATCTGGAGCACTTACAAAACACAAATGCTAGAGTTAGCCATCGTTTTATGTT CAATATCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAGATGAACAGCGTGC GTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGCCGTCACGATTACTGGCTTCTGGC TGGTGTAGTACAACATGGATATGGAAGATGGCAGGTACGTGTACACTTTTTGTTCAATTT TTTGAAAACCGCTTTGTTAGATATTCATGATAAGAACAATTGTAGTCAGATTCTGAGTCA TACTAAACGTAGTAATTAGTTCCCCATTATTTCGCCATTGTTTGGGATTGTATAATGCAA TCTGAAACTAAGTCATTTAACTTGGTAGACGAACCTGTTTCATGATAATGCTAATCTAGA AACACATTATTACTACTTTGTCTTTGGAATACTCAGATTGTACAAGTTATTTCCATGTGT ACTTATTAGGTTAGATTCNGTTTAGGAAGTAGTGAACTCAAAACACTGCTCCACTTTTGT TNAAGTGGTCTNCAATTGAGTGACCCTACACAAAGAGATCTTACCGATATTGTACATAGT GGTCAACACAAAAAGTGATTGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10477#1      ------------------------------------------------------------
consensus_10477#2      ------------------------------------------------------------
consensus_10477#0      ACCGCTGTATTCAGGCATTTTGGTTGATGGCGATTGTGGAGGCGAGTCACAATACTAACG 60
                                                                                   

consensus_10477#1      ------------------------------------------------------------
consensus_10477#2      ------------------------------------------------------------
consensus_10477#0      CACACCTTGAAGAGAGTCTACCAAACTACCAGGTTGAACTAGACACCACAGAAGAAAATT 120
                                                                                   

consensus_10477#1      ------------------------------------------------------------
consensus_10477#2      ------------------------------------------------------------
consensus_10477#0      ATGTAGATTCATACGGATCTACTTGTGTTCGTTGTGGCGATCCCTTTCAACTAAATGAAA 180
                                                                                   

consensus_10477#1      -------------------------------------------CATGGAAATCGATGAAT 17
consensus_10477#2      ------------------------------------------------------------
consensus_10477#0      AAGTTGTGCAGACAAAAGATAGCAGTTACCACGTTAAGTGTTTTGTCTGTGTACAGTGTT 240
                                                                                   

consensus_10477#1      TGCGCGTTTCTGTAGGACAAAATAAAGTGGTAGACGATCCACCAACAAATATAAAGCCTG 77
consensus_10477#2      -------------------------------------------------TCTTTAGCCTG 11
consensus_10477#0      TTCAACCATTCCCGGAAGGCGTTTATTATGAATTTGATGGCCGAAAATACTGTGAACATG 300
                                                                             * * **

consensus_10477#1      AGTTGCATGTAGATCCTATGGGCGTCCCAACGGAATGTGTAGA------AAAGGAGGATG 131
consensus_10477#2      AGTTGCATGTAGATCCTATGGGCGTTCCAACAGAATGTGTAGA------AAAGGAGAATG 65
consensus_10477#0      ACTTTCACGTT--TTATTTGCGCCATGTTGTGGAAAGTGTGGATGTTTCATAATTGGCAG 358
                       * ** ** **   *  * ** **         *** **** **      * *   *   *

consensus_10477#1      GGAATCTGGAGCACTTA--CAAAACACAAATGCTAGAGTTAGCCATCGTTTTATGTTCAA 189
consensus_10477#2      GGAATCTGGAGCACTTA--CAAAACACAAATGCTAGAGTTAGCCATCGTTTTATGTTCAA 123
consensus_10477#0      GGTAATAAAGGCAATGAATTATAACTGGCATCCTGATTGTTACCGTTGTCACATATGTGA 418
                       ** *      *** * *   * ***    ** **     *  ** * **   ** *   *

consensus_10477#1      TA------TCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAAATGAACAGCG 243
consensus_10477#2      TA------TCGCTGACGGTGGTTTCACTGAACTTCATACAATATGGTTAGATGAACAGCG 177
consensus_10477#0      TAAGTGTCTTGCAGATGAGGGGTTTGTCAAATTACATGGAAGA--GCTGTTTGCCATGCG 476
                       **      * ** ** *  ** **     ** * ***  ** *  * *   **    ***

consensus_10477#1      TGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGC---CGTCACGATTACTGGCT 300
consensus_10477#2      TGCGTTAATAAAAGACCGAGAGGCCGAAATATGGCACCGC---CGTCACGATTACTGGCT 234
consensus_10477#0      TGTAATGA-ACACGAAAAAGCGTCTGGTTTGTCATACATCACATGTCACAAATGCCGAGC 535
                       **   * * * * **   ** * * *   * *   **  *    ***** * * * *   

consensus_10477#1      TCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGGATATACACAATGA-CCCTC 359
consensus_10477#2      TCTGGCTGGTGTAGTACAACATGGATATGGAAGATGGCAGG-----TACGTGTA-CACTT 288
consensus_10477#0      TGTTGTGGAAGAAGGACAACAGTTAAAGTATCGCTCTGAAGTATATCATGCATATCACTT 595
                       * * *  *  * ** ******   * *     * *   * *      *     * * ** 

consensus_10477#1      ACTATGCAATTGTAAATGAGCCA--TTTAAGGATGAAACTCAGAAAGCCAACTTTT-TGG 416
consensus_10477#2      TTTGTTCAATTTTTTGAAAACCG--CTTTGTTA-GATATTCATGATAAGAAC-------- 337
consensus_10477#0      TTCATGTGCATCCCGTGGTTCTGAACTTTCTTCTGATGCCCGAGAAAAGGATGGAGATTT 655
                           *     *         *     **      **    *   *     *         

consensus_10477#1      AAATTAAGAACCGCTTT----TTGGCTCGCCGCTTCAA-ACTTTTAGAACAAGCTCTAAT 471
consensus_10477#2      -AATTGTAGTCAGATTC----TGAGT----CATACTAA-ACGTAGTAATTAGTTCCCCAT 387
consensus_10477#0      GTACTGTCTTCGCTGTCACGATAAAATGGGAATACCCATATGTGGTGCTTGTAGACGCCC 715
                         * *     *    *     *               * *  *            *    

consensus_10477#1      AATCGAAGAGCAACTTCGTCGAGCAGCCCTTCTAATATAGCAGC-AGACCAGTCCGAGCA 530
consensus_10477#2      TATTT-----CGCCATTGTTTGGGA--TTGTATAATGCAATCTG-AAACTAAGTCATTTA 439
consensus_10477#0      TATTGAAGAAAGAGTTGTTCATGCTTTAGGAAAAACATGGCATGTGGAACACTTTGTTTG 775
                        **            *  *   *          **            *  *         

consensus_10477#1      CATACAAAGCTTGAACAGACGATNTACAGAACTTGAATGTTNGGCTACAGG-ACAACTTC 589
consensus_10477#2      ---ACTTGG--TAGACGAACCTGTTTCATGAT---AATGCTAATCTAGAAACACATTATT 491
consensus_10477#0      --TGCCCGATGTGAA-AAACCGTTTTTAGGTT---CTCGCCATTATGAGAAGAAAGGCTT 829
                           *      *  *   **    *  *          *      *      * *   * 

consensus_10477#1      ACTTATTCAATGATGCACTTGCCGG--AAACAAAGCTTTAGTACCATTGCTACACAAAGT 647
consensus_10477#2      ACTACTTTGTCTTTGGAATACTCAG--ATTGTACAAGTTATTTCCATGTGTACTTATTAG 549
consensus_10477#0      AGCATACTGTGAACTACACTATCAGTTGTTGTTCGGAATGCTGTGCTATTCTTGTAATCA 889
                       *                     * *             *  *    *        *    

consensus_10477#1      GTTAACACTTATGGAAGACATCCTGGTTGACATGAAACAAGACGTTGCCCG---ACTGGT 704
consensus_10477#2      GTTAGATTCNGTTTAGGAAGT---AGTGAACTCAAAACACTGCTCCACTT-----TTGTT 601
consensus_10477#0      GGTAATACCTGGGGAAACAGT----GTATGCATTAAATAAGGCTTGGTGTGTAGATCATT 945
                       * **          *     *    **   *   *** *   *                *

consensus_10477#1      CAATTTATTACCTCGAT--TGCCTCCGGTCACTCAGCGCTTACAGCTCAGTCATACAG-G 761
consensus_10477#2      NAAGTGGT--CTNCAAT--TGAGTGACCCTACACAAAG---AGATCTTACCGATATTG-T 653
consensus_10477#0      TCGGGTGTAGCGTGTGTGACAGACGCCTCAGTCCGAAAACCAAGTTTTATGAATTCGACT 1005
                              *  *     *                *       *    * *   **      

consensus_10477#1      ACTCCTTGGG---AAGCTTACACAACAACTCACTGCCAACAAAAACGCTCAGTCGGTACA 818
consensus_10477#2      ACATAGTGGT---CA----ACACAAAAAGTGATTGAGA---------------------- 684
consensus_10477#0      ACAAGCCGGTTTGCAAATCTTGTTATGAGCTGTTCCCCATGGAATTACGTAAACGTATTG 1065
                       **     **     *         *  *     *                          

consensus_10477#1      GGCTCCTAAACAGACCGAAGTTAAAGAAGAGAGTGTGAATCTTGCCACACCAACTTCGGA 878
consensus_10477#2      ------------------------------------------------------------
consensus_10477#0      CGAAAATGCACAAAATGGAGGACTAACCCAAAAATTAAATTCGGTTTTATGATAAATTTG 1125
                                                                                   

consensus_10477#1      AAACCAGCAGCCATAACCAAGGTCTTTCCCTTGAAAAACTTGTATAGTTNTCTCTTCTCA 938
consensus_10477#2      ------------------------------------------------------------
consensus_10477#0      AACCTACCAACTCACTTTTACTGCGCTTCTGTTACTTTACTATCTTTGACTATGTTTTGC 1185
                                                                                   

consensus_10477#1      GTCACATAATATTNTAGTGATTAATTCTCAATGTTCATATCTGTCATAAAAATAAATGCG 998
consensus_10477#2      ------------------------------------------------------------
consensus_10477#0      ATCTTAACTTTTGGTTTGCCTAAAATTGTAACTGGGTTCATTGCTATATTAATCAACAAA 1245
                                                                                   

consensus_10477#1      CACTTTTGTGTTTTTAAAAAAAAAAAAAAAAAAAAA------------------------ 1034
consensus_10477#2      ------------------------------------------------------------
consensus_10477#0      CTAAAATAAAACACAAAAGTGCGCATTTATTTTTATGACAGATATGAACATTGAGAATTA 1305
                                                                                   

consensus_10477#1      -----------------------------
consensus_10477#2      -----------------------------
consensus_10477#0      ATCACTAAAATATTATGTGACTAGACGGT 1334
                                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)