cluster # 10479

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Schistosoma mansoni
cluster # 10479 cluster # 10479 Sequences # 17 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10479#0 length = 2146 sequences # 13

consensus_10479#1 length = 507 sequences # 3
consensus_10479#2 length = 342 sequences # 1

consensusID : consensus_10479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 2146
fasta sequence

                              [AAGGATTATTATTATAATTATTTCGAAAGTATTCAAATGTTTCTTATATTTACAAATAAATGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATGTCATATTCAAGTATGTATAATCTAACATTAATGATGTGATGAACAACAAGTGTTTTTTCTGTTCAAAACAAACCGTGAATGCATATTCATTACTTCATCAAAACTTGAATTCTTTATATTTTTTCGATGCGGACGGAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACTACCCCCGCCAGATTTCGCTCCACTAATTTGATCTTGTTGTGATTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTTCAGCTTCGATTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTAGTACTACCCATAAGTGCATTAGGTTGTAAATTAGTTTCAGTTTCGGGAAGTATACGATACAATTGAGTGGACGGTGTAACCAAACCAGTACTATCTTCCATCGCCTCTTCTATAGTTTTCTTACGTAGTTCAATCATACTTTGTGGAGTTTCCAAACCAGCACCAACACTGGATACACCACTAGGTGTTATTAATCCTCCAGCAGGTGTGACTAGGCCACCGACATCTAATGGTCGAGGAATAGATCCTGCACTTGGCAAAGTAACAAGCATCTTTTTGGCTTCACTTTCAGCCATTGCAGATGTTGCTGCTTGATCTTCATCACTCTCATCGTCCGTATCCATATCCTGATCACCTTCTTCACCTTCAGACTCTTCATCAGATTCCAACTCGCCCCAATAACTGATATTTCCATGAGCGATTTGCTCATCAGCATCCTCAAAAGTGGTTGGTGGGGGTGGGGGTGGTGGTACACCGGCAATATTACCTCCATTTCCAAACACATCTCCATAAACGGGACGTCCTAGCTCATCCACAGGAGGTTTACCCCATCCGCCAGGGTGGTAACCAAATGCACAACCATCCGGAATAGGAGCGTTTAGACCGGGAATCTTCAAATTGGGATACGAAGGAGGTGGACCATACCGTTGCATAGCAATCAACCATGGAGGAGGATATCGCTCAGCACCGGAGCCGGATGGTAAACCTAGAGCATTCCGAAGCTCATCTGACATATTACCAGGCTTTTTCTCCTTCAATTTTACTTCGAATTCTTTGCCTTCATAATAAAGATCGCCATGAATTGACAGTTTGGGTTTGGTTTGATACTTGAAGAAAGCATCGTGCAATTTGTGATAATCGATATCCACCTTTCCAACTTTAGGACGAATTTTTTCACGCATTTTTGTTTTTAATGTTTTGTCAGAATCTTTGTCTTGTACCGTTTGTCGCATCTCCATTATTCCTGTGCGAGCAATGAAGTCGGGTAAGCGAAAAGGAGGTTTCTCGAAACCACGTTTACCCTGTAGATATTTTCTTTTTGCACACCAGTGTTTGGGAACTGGTACAGTATTTCGATATGCCTTCAAGAAAGCTAGTAAAAGTGGATCTTTGGCACAGACATCCCACATTTCGATGACATCGGGGCGTGCTACCATCTGTTTGAGTGCAGCAACGCTAGGACGGTTGAGACGTTTTAACTTTTTCTTGCTTAGTGCCTCAATCCCATTAGACCCTGAATCTAATCCCCCTGCAGAACCACCTTTGGGCTGTGGACCTTTATTCGATTCAGGATCTTGACTTGGGAAACGCCGCCTGGCTTCGTTTGCTGAAGCCTCTTCTGCAAGAAGTGCAGCAGTACGAGCCTTCCAATTGATGTCAGTATGTGATACTGGTTTAGAGGGAACAGAGTCTGCCTCATCATCAGCCAACTTGAAGCGTTCGAACGGCCCTTTATATTGAAACTCTATAATTTCATCTTCTGGTTCAGGGTCACTTCCTTCGTCTTCATGCACTCCATTAGGATAGTCTAAAACCCCATTTGACAAATTTGGCTGGTTTTTCAGCTCTCTACGCCGCTTCAGTGAAGCTTTTTTCCTTAATTTCTTTTTCCTGTTACGTTCTTGTTGTCTACTGAGTCCATAAGAGAAATTAATAGAGTCAAACGACGGTTCAACTGAGTTCGTAAGAGTCAAGATCCTGAATCGAATAAAGGTCCACAGTCCAAA]

[+] EMBL CD073899             [AAGGATTATTATTATAATTATTTCGAAAGTATTCAAATGTTTCTTATATTTACAAATAAATGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATGTCATATTCAAGTATGTATAATCTAACATTAATGATGTGATGAACAACAAGTGTTTTTTCTGTTCAAAACAAACCGTGAATGCATATTCATTACTTCATCAAAACTTGAATTCTTTATATTTTTTCGATGCGGACGGAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACTACCCCCGCCAGATTTCGCTCCACTAATTTGATCTTGTTGTGATTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTTCAGCTTCGATTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTAGTACTACCCATAAGTGCATTAGGTTGTAAATTAGTTTCAGTTTCGGGAAGTATACGATACAATTGAGTGGACGGTGTAACCAAACCAGTACTATCTTCCATCGCCTCTTCTATAGTTTTCTTACGTAGTTCAATCATACTTTGTGGAGTTTCCAAACCAGCACCAACACTGGATACACCACTAGGTGTTATTAATCCTCCAGCAGGTGTGACTAGGCCACCGACATCTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD072916             [                                       TTTCTTATATTTACAAATAAATGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATGTCATATTCAAGTATGTATAATCTAACATTAATGATGTGATGAACAACAAGTGTTTTTTCTGTTCAAAACAAACCGTGAATGCATATTCATTACTTCATCAAAACTTGAATTCTTTATATTTTTTCGATGCGGACGGAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACTACCCCCGCCAGATTTCGCTCCACTAATTTGATCTTGTTGTGATTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTTCAGCTTCGATTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTAGTACTACCCATAAGTGCATTAGGTTGTAAATTAGTTTCAGTTTCGGGAAGTATACGATACAATTGAGTGGACGGTGTAACCAAACCAGTACTATCTTCCATCGCCTCTTCTATAGTTTTCTTACGTAGTTCAATCATACTTTGTGGAGTTTCCAAACCAGCACCAACACTGGATACACCACTAGGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD149054             [                                                                                                                                                                                                                                                                                                                   ATCTTG TGGGATCCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTTCAGCTTNGATTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTAGTACTACCCATAAGTGCATTAGGTTGTAAATTAGTTTCAGTTTCGGGAAGTATACGATACAATTGAGTGGACGGTGTAACCAAACCAGTACTATCTTCCATCGCCTCTTCTATAGTTTTCTTACGTAGTTCAATCATACTTTGTGGAGTTTCCAAACCAGCACCAACACTGGATACACCACTAGGTGTTATTAATCCTCCAGCAGGTGTGACTAGGCCACCGACATCTAATGGTCGAGGAATAGATCCTGCACTTGGCAAAGTAACAAGCATCTTTTTGGCTTCACTTTCAGCCATTGCAGATGTTGCTGCTTGATCTTCATCACTCTCATCGTCCGTATCCATATCCTGATCACCTTCTTCACCTTCAGACTCTTCATCAGATTCCAACTCGCCCCAATAACTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD135365             [                                                                                                                                                                                                                                                                                                                      TTGTTGTGATTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTCCAGCTTCGATTCCACGCTGAGCACCTGTTACACCAGCCGCATCATACAATTTAGTACTACCCATAAGTGCATTAGGTTGTAAATTAGTTTCAGTTTCGGGAAGTATACGATACAATTGAGTGGACGGTGTAACCAAACCAGTACTATCTTCCATCGCCTCTTCTATAGTTTTCTTACGTAGTTCAATCATACTTTGTGGAGTTTCCAAACCAGCACCAACACTGGATACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AI975814             [                                                                                                                                                                                                                                                                                                                                                                                               TGAGCACCTGTTACACCAGCCACATCATACAATTTAGTACTACCCATAAGTGCATTAGGTTGTAAATTAGTTTCAGTTTCGGGAAGTATACGATACAATTGAGTGGCTGGTGTAACCAAACCAGTACTATCTTCCATCGCCTCTTCTATAGTTTTCTTACGTAGTTCAATCATACTTTGTGGAGTTTCCAAACCAGCACCAACACTGGATACACCACTAGGTGTTATTAATCCTCCAGCAGGTGTGACTAGGCCACCGACATCTAATGGTCGAGGAATAGATCCTGCACTTGGCAAAGTAACAAGCATCTTTTTGGCTTCACTTTCAGCCATTGCAGATGTTGCTGCTTGATCTTCATCACTCTCATCGTCCGTATCCATATCCTGATCACCTTCTTCACCGTCAGACTCTTCATCAGATTCCAACTCGCCCCAATAACTGATATTTCCATGAGCGATTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD078356             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCTTCTATAG TTTCTTACGTAGTTCAATCATAC TNGTGGAG TTCCAAACCAGCACCAACACTGGATACACCACTAGGTGTTATTAATCCTCCAGCAGGTGTGACTAGGCCACCGACATCTAATGGTCGAGGAATAGATCCTGCACTTGGCAAAGTAACAAGCATCTTTTTGGCTTCACTTTCAGCCATTGCAGATGTTGCTGCTTGATCTTCATCACTCTCATCGTCCGTATCCATATCCTGATCACCTTCTTCACCTTCAGACTCTTCATCAGATTCCAACTCGCCCCAATAACTGATATTTCCATGAGCGATTTGCTCATCAGCATCCTCAAAAGTGGTTGGTGGGGGTGGGGGTGGTGGTACACCGGCAATATTACCTCCATTTCCAAACACATCTCCATAAACGGGACGTCCTAGCTCATCCACAGGAGGTTTACCCCATCCGCCAGGGTGGTAACCAAATGCACAACCATCCGGAATAGGAGCGTTTAGACCGGGAATCTTCAAATTGGGATACGAAGGAGGTGGACCATACCGTTGCATAGCAATCAACCATGGAGGAGGATATCGCTCAGCACCGGAGCCGGATGGTAAACCTAGAGCATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD078272             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGTAGTTCAATCATACTNTGTGGAGTTTCCAAACCAGCACCAACACTGGATACACCACTAGGTGTTATTAATCCTCCAGCAGGTGTGACTAGGCCACCGACATCTAATGGTCGAGGAATAGATCCTGCACTTGGCAAAGTAACAAGCATCTTTTTGGCTTCACTTTCAGCCATTGCAGATGTTGCTGCTTGATCTTCATCACTCTCATCGTCCGTATCCATATCCTGATCACCTTCTTCACCTTCAGACTCTTCATCAGATTCCAACTCGCCCCAATAACTGATATTTCCATGAGCGATTTGCTCATCAGCATCCTCAAAAGTGGTTGGTGGGGGTGGGGGTGGTGGTACACCGGCAATATTACCTCCATTTCCAAACACATCTCCATAAACGGGACGTCCTAGCTCATCCACAGGAGGTTTACCCCATCCGCCAGGGTGGTAACCAAATGCACAACCATCCGGAATAGGAGCGTTTAGACCGGGAATCTTCAAATTGGGATACGAAGGAGGTGGACCATACCGTTGCATAGCAATCAACCATGGAGGAGGATATCGCTCAGCACCGGAGCCGGATGGTAAACCTAGAGCATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD079637             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTCCAACTCGCCNCAATAACTGATATTTCCATGAGCGATTTGCTCATCAGCATCCTCAAAAGTGGTTGGTGNGGGTGGGGGTGGTGGTACACCGGCAATATTACCTCCATTTCCAAACACATCTCCATAAACGGGACGTCCTAGCTCATCCACAGGAGGTTTACCCCATCCGCCAGGGTGGTAACCAAATGCACAACCATCCGGAATAGGAGCGTTTAGACCGGGAATCTTCAAATTGGGATACGAAGGAGGTGGACCATACCGTTGCATAGCAATCAACCATGGAGGAGGATATCGCTCAGCACCGGAGCCGGATGGTAAACCTAGAGCATTCCGAAGCTCATCTGACATATTACCAGGCTTTTTCTCCTTCAATTTTACTTCGAATTCTTTGCCTTCATAATAAAGATCGCCATGAATTGACAGTTTGGGTTTGGTTTGATACTTGAAGAAAGCATCGTGCAATTTGTGATAATCGATATCCACCTTTCCAACTTTAGGACGAATTTTTTCACGCATTTTTGTTTTTAATGTTTTGTCAGAATCTTTGTCTTGTACCGTTTGTCGCATCTCCATTATTCCTGTGCGAGCAATGAAGTCGGGTAAGCGAAAAGGAGGTTTCTCGAAACCACGTTTACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD114213             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACAACCATCCGGAATAGGAGCGTTTAGACCGGGAATCTTCAAATTGGGATACGAAGGAGGTGGACCATACCGTTGCATAGCAATCAACCATGGAGGAGGATATCGCTCAGCACCGGAGCCGGATGGTAAACCTAGAGCATTCCGAAGCTCATCTGACATATTACCAGGCTTTTTCTCCTTCAATTTTACTTCGAATTCTTTGCCTTCATAATAAAGATCGCCATGAATTGACAGTTTGGGTTTGGTTTGATACTTGAAGAAAGCATCGTGCAATTTGTGATAATCGATATCCACCTTTCCAACTTTAGGACGAATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD141307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGCACCGGAGCCAGATGGTAAACCTAGAGCATTCCGAAGCTCATCTGACATATTACCAGGCTTTTTCTCCTTCAATTTTACTTCGAATTCTTTGCCTTCATAATAAAGATCGCCATGAATTGACAGCTTGGGCTTGATTTGACACTTGAGGAAAGCATCGAGCAATTTGTGATAATCGATATCCACCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD150266             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCCACCTTTCCAACTTTAGGACGAATTTTTTCACGCATTTTTGCTTTTAATGTTTTGTCAGAATCTTTGTCTTGTACCGTTTGTCGCATCTCCATTATTCCTGTGCGACCAATGAAGTCGGGTAAGCGAAAAGGAGGTTTCTCGAAACCACGTTTACCCTGTAGATATTTTCTTTTTGCACACCAGTGTTTGGGAACTGGTACAGTATTTCGATATGCCTTCAAGAAAGCTAGTAAAAGTGGATCTTTGGCACAGACATCCCACATTTCGATGACATCGGGGCGTGCTACCATCTGTTTGAGTGCAGCAACGCTAGGACGGTTGAGACGTTTTAACTTTTTCTTGCTTAGTGCCTCAATCCCATTAGACCCTGAATCTAATCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD113382             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTCGATGACATCGGGACGTGCTACCATCTGTTTGAGTGCAGCAACGCTAGGACGGTTTAGACGTTTTAACTTTTTCTTGCTTAGTGCCTCAATCCCATTAGACCCTGAATATAATCCCCCTGCAGAACCACCTTTGGGCTGTGGACCTTTATTCGATTCAGGATCTTGACTTGGGAAACGCCGCCTGGCTTCGTTTGCTGAAGCCTCTTCTGCAAGAAGTGCAGCAGTACGAGCCTTCCAATTGATGT                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD189768             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGAAGCCTCTTCTGCAAGAAGTGCAGCAGTACGAGCCTTCAAATTGATGTCAGTATGTGATACTGGTTTAGAGGGAACAGAGTCTGCCTCATCATCAGCCAACTTGAAGCGTTCGAACGGCCCTTTATATTGAAACTCTATAATTTCATCTTCTGGTTCAGGGTCACTTCCTTCGTCTTCATGCACTCCATTAGGATAGTCTAAAACCCCATTTGACAAATTTGGCTGGTTTTTCAGCTCTCTACGCCGCTTCAGTGAAGCTTTTTTCCTTAATTTCTTTTTCCTGTTACGTTCTTGTTGTCTACTGAGTCCATAAGAGAAATTAATAGAGTCAAACGACGGTTCAACTGAGTTCGTAAGAGTCAAGATCCTGAATCGAATAAAGGTCCACAGTCCAAA]




>consensus_10479#0
AAGGATTATTATTATAATTATTTCGAAAGTATTCAAATGTTTCTTATATTTACAAATAAA
TGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATGTCATATTCAAGTATG
TATAATCTAACATTAATGATGTGATGAACAACAAGTGTTTTTTCTGTTCAAAACAAACCG
TGAATGCATATTCATTACTTCATCAAAACTTGAATTCTTTATATTTTTTCGATGCGGACG
GAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACTACCCCCGCCAGATTTCGCTCCAC
TAATTTGATCTTGTTGTGATTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAG
GATCTTCAGCTTCGATTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTAG
TACTACCCATAAGTGCATTAGGTTGTAAATTAGTTTCAGTTTCGGGAAGTATACGATACA
ATTGAGTGGACGGTGTAACCAAACCAGTACTATCTTCCATCGCCTCTTCTATAGTTTTCT
TACGTAGTTCAATCATACTTTGTGGAGTTTCCAAACCAGCACCAACACTGGATACACCAC
TAGGTGTTATTAATCCTCCAGCAGGTGTGACTAGGCCACCGACATCTAATGGTCGAGGAA
TAGATCCTGCACTTGGCAAAGTAACAAGCATCTTTTTGGCTTCACTTTCAGCCATTGCAG
ATGTTGCTGCTTGATCTTCATCACTCTCATCGTCCGTATCCATATCCTGATCACCTTCTT
CACCTTCAGACTCTTCATCAGATTCCAACTCGCCCCAATAACTGATATTTCCATGAGCGA
TTTGCTCATCAGCATCCTCAAAAGTGGTTGGTGGGGGTGGGGGTGGTGGTACACCGGCAA
TATTACCTCCATTTCCAAACACATCTCCATAAACGGGACGTCCTAGCTCATCCACAGGAG
GTTTACCCCATCCGCCAGGGTGGTAACCAAATGCACAACCATCCGGAATAGGAGCGTTTA
GACCGGGAATCTTCAAATTGGGATACGAAGGAGGTGGACCATACCGTTGCATAGCAATCA
ACCATGGAGGAGGATATCGCTCAGCACCGGAGCCGGATGGTAAACCTAGAGCATTCCGAA
GCTCATCTGACATATTACCAGGCTTTTTCTCCTTCAATTTTACTTCGAATTCTTTGCCTT
CATAATAAAGATCGCCATGAATTGACAGTTTGGGTTTGGTTTGATACTTGAAGAAAGCAT
CGTGCAATTTGTGATAATCGATATCCACCTTTCCAACTTTAGGACGAATTTTTTCACGCA
TTTTTGTTTTTAATGTTTTGTCAGAATCTTTGTCTTGTACCGTTTGTCGCATCTCCATTA
TTCCTGTGCGAGCAATGAAGTCGGGTAAGCGAAAAGGAGGTTTCTCGAAACCACGTTTAC
CCTGTAGATATTTTCTTTTTGCACACCAGTGTTTGGGAACTGGTACAGTATTTCGATATG
CCTTCAAGAAAGCTAGTAAAAGTGGATCTTTGGCACAGACATCCCACATTTCGATGACAT
CGGGGCGTGCTACCATCTGTTTGAGTGCAGCAACGCTAGGACGGTTGAGACGTTTTAACT
TTTTCTTGCTTAGTGCCTCAATCCCATTAGACCCTGAATCTAATCCCCCTGCAGAACCAC
CTTTGGGCTGTGGACCTTTATTCGATTCAGGATCTTGACTTGGGAAACGCCGCCTGGCTT
CGTTTGCTGAAGCCTCTTCTGCAAGAAGTGCAGCAGTACGAGCCTTCCAATTGATGTCAG
TATGTGATACTGGTTTAGAGGGAACAGAGTCTGCCTCATCATCAGCCAACTTGAAGCGTT
CGAACGGCCCTTTATATTGAAACTCTATAATTTCATCTTCTGGTTCAGGGTCACTTCCTT
CGTCTTCATGCACTCCATTAGGATAGTCTAAAACCCCATTTGACAAATTTGGCTGGTTTT
TCAGCTCTCTACGCCGCTTCAGTGAAGCTTTTTTCCTTAATTTCTTTTTCCTGTTACGTT
CTTGTTGTCTACTGAGTCCATAAGAGAAATTAATAGAGTCAAACGACGGTTCAACTGAGT
TCGTAAGAGTCAAGATCCTGAATCGAATAAAGGTCCACAGTCCAAA

consensusID : consensus_10479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 507
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTATTCAAATGTTTCTTATATTTACAAATAAATGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATG-TCATA-TTCAAGTATGTATAA-TCTAACATTAATGATGTGATG-AACAACAAGTG-TTTTTTCTG-TTC-AAAACAAACCGTGAATGCATA-TTCATTACTTCA-TCAAAACTTGAATTCTTTATATTTTTTCGATGCGGACGGAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACT-ACCCCCGCCAGATTTCGCTCCACTAATTTGATCTTGTTGTGA-TTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTTCAGCTTCGA-TTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTAGTACTACCCATAAGTGCATTAGTTTGTAAATTAGGTTCAGTTTCGGGGAAGTATACAATACATTTGAGTGGCCGGTGTTACCAAACCAGTACTA]

[+] EMBL AI395228             [TTTTTTTTTTTTTTTTTTTTTTTTATTCAAATGTTTCTTATATTTACAAATAAATGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATG TCATA TTCAAGTATGTATAA TCTAACATTAATGATGTGATG AACAACAAGTG TTTTTTCTG TTC AAAACAAACCGTGAATGCATA TTCATTACTTCA TCAAAACTTGAATTCTTTATATTTTTTCGATGCGGACGGAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACT ACCCCCGCCAGATTTCGCTCCACTAATTTGATCTTGTTGTGA TTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTTCAGCTTCGA TTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTAGTACTACCCATAAGTGCATTAGTTTGTAAATTAGGTTCAGTTTCGGGGAAGTATACAATACATTTGAGTGGCCGGTGTTACCAAACCAGTACTA]
[+] EMBL AI395100             [TTTTTTTTTTTTTTTTTTTTTTTTATTCAAATGTTTCTTATATTTACAAATAAATGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATG TCATA TTCAAGTATGTATAA TCTAACATTAATGATGTGATG AACAACAAGTG TTTTTTCTG TTC AAAACAAACCGTGAATGCATA TTCATTACTTCA TCAAAACTTGAAATCTTTATATTTTTTCGATGCAGACGGAACAATTGGCTCGGGTGCATTACTCAAAACTGGACTAACCCCCGCCAGATTTCGCTCC                                                                                                                                                                                                                         ]
[-] EMBL AA559375             [                                                                                            CTGTATGTTCATATTTCAAGTATGTATAATTCTAACATTAATGATGTGATGAAACAACAAGTGTTTTTTTCTGTTTCAAAAACAAACCGTGAATGCATATTTCATTACTTCATTCAAAACTTGAATTCTTTATATTTTTTCGATGCGGACGGAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACT ACCCCCGCCAGATTTCGCTCCACTAATTTGATCTTGTTGTGATTTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTTCAGCTTCGATTTCCACGCTGAGCACCTG                                                                                                                        ]




>consensus_10479#1
TTTTTTTTTTTTTTTTTTTTTTTTATTCAAATGTTTCTTATATTTACAAATAAATGTTAA
GTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATGTCATATTCAAGTATGTATAAT
CTAACATTAATGATGTGATGAACAACAAGTGTTTTTTCTGTTCAAAACAAACCGTGAATG
CATATTCATTACTTCATCAAAACTTGAATTCTTTATATTTTTTCGATGCGGACGGAACAG
TTGGCTCGGGTGCATTACTCAAAACTGCACTACCCCCGCCAGATTTCGCTCCACTAATTT
GATCTTGTTGTGATTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGAGGATCTT
CAGCTTCGATTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTAGTACTAC
CCATAAGTGCATTAGTTTGTAAATTAGGTTCAGTTTCGGGGAAGTATACAATACATTTGA
GTGGCCGGTGTTACCAAACCAGTACTA

consensusID : consensus_10479#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [TTTTTTTTTTTTTTAAGTGAAAGATATGATCACTTTTTTATTCCGTTGCTGTATGTCATATTCACGTATGTATAATCTAACATTACTGACTGTGTTGAACAACAAGTGTTTTTTCTGGTTAATCCATACCGTGAATGCATATTCATTACTTCATCAAAACTTGAGTTCTTTATATTTTTTCGATGCGGACGGTACAGTTGGCTCGGGTGCATTACTCATGACTGCACTACCCCCGCCATATTTCGCTCCACTAATTTGATCTTGTTGTGACTCATTGCCTGATATATGTTTACGTATGATGTGTTCACGAGGATCTTCATCTTCGATTCCACGCTTAGCACC]

[+] EMBL AI395782             [TTTTTTTTTTTTTTAAGTGAAAGATATGATCACTTTTTTATTCCGTTGCTGTATGTCATATTCACGTATGTATAATCTAACATTACTGACTGTGTTGAACAACAAGTGTTTTTTCTGGTTAATCCATACCGTGAATGCATATTCATTACTTCATCAAAACTTGAGTTCTTTATATTTTTTCGATGCGGACGGTACAGTTGGCTCGGGTGCATTACTCATGACTGCACTACCCCCGCCATATTTCGCTCCACTAATTTGATCTTGTTGTGACTCATTGCCTGATATATGTTTACGTATGATGTGTTCACGAGGATCTTCATCTTCGATTCCACGCTTAGCACC]




>consensus_10479#2
TTTTTTTTTTTTTTAAGTGAAAGATATGATCACTTTTTTATTCCGTTGCTGTATGTCATA
TTCACGTATGTATAATCTAACATTACTGACTGTGTTGAACAACAAGTGTTTTTTCTGGTT
AATCCATACCGTGAATGCATATTCATTACTTCATCAAAACTTGAGTTCTTTATATTTTTT
CGATGCGGACGGTACAGTTGGCTCGGGTGCATTACTCATGACTGCACTACCCCCGCCATA
TTTCGCTCCACTAATTTGATCTTGTTGTGACTCATTGCCTGATATATGTTTACGTATGAT
GTGTTCACGAGGATCTTCATCTTCGATTCCACGCTTAGCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10479#0      AAGGATTATTATTATAATTATTTCGAAAGTATTCAAATGTTTCTTATATTTACAAATAAA 60
consensus_10479#1      ------TTTTTTTTTTTTTTTTTTTTTTTTATTCAAATGTTTCTTATATTTACAAATAAA 54
consensus_10479#2      ---------------------------------------TTTTTTTTTTTT--------- 12
                                                              *** ** * ***         

consensus_10479#0      TGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATGTCATATTCAAGTATG 120
consensus_10479#1      TGTTAAGTGAAAGATATGATCACTTTTTTATTCTGTTGCTGTATGTCATATTCAAGTATG 114
consensus_10479#2      --TTAAGTGAAAGATATGATCACTTTTTTATTCCGTTGCTGTATGTCATATTCACGTATG 70
                         ******************************* ******************** *****

consensus_10479#0      TATAATCTAACATTAATGA-TGTGATGAACAACAAGTGTTTTTTCTGTTCAAAACAAACC 179
consensus_10479#1      TATAATCTAACATTAATGA-TGTGATGAACAACAAGTGTTTTTTCTGTTCAAAACAAACC 173
consensus_10479#2      TATAATCTAACATTACTGACTGTGTTGAACAACAAGTGTTTTTTCTGGTTAATCCATACC 130
                       *************** *** **** ********************** * **  ** ***

consensus_10479#0      GTGAATGCATATTCATTACTTCATCAAAACTTGAATTCTTTATATTTTTTCGATGCGGAC 239
consensus_10479#1      GTGAATGCATATTCATTACTTCATCAAAACTTGAATTCTTTATATTTTTTCGATGCGGAC 233
consensus_10479#2      GTGAATGCATATTCATTACTTCATCAAAACTTGAGTTCTTTATATTTTTTCGATGCGGAC 190
                       ********************************** *************************

consensus_10479#0      GGAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACTACCCCCGCCAGATTTCGCTCCA 299
consensus_10479#1      GGAACAGTTGGCTCGGGTGCATTACTCAAAACTGCACTACCCCCGCCAGATTTCGCTCCA 293
consensus_10479#2      GGTACAGTTGGCTCGGGTGCATTACTCATGACTGCACTACCCCCGCCATATTTCGCTCCA 250
                       ** *************************  ****************** ***********

consensus_10479#0      CTAATTTGATCTTGTTGTGATTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGA 359
consensus_10479#1      CTAATTTGATCTTGTTGTGATTCAGTGCCTGATATACGTTTACGTAACATGCGTTCACGA 353
consensus_10479#2      CTAATTTGATCTTGTTGTGACTCATTGCCTGATATATGTTTACGTATGATGTGTTCACGA 310
                       ******************** *** *********** *********  *** ********

consensus_10479#0      GGATCTTCAGCTTCGATTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTA 419
consensus_10479#1      GGATCTTCAGCTTCGATTCCACGCTGAGCACCTGTTACACCAGCCACATCATACAATTTA 413
consensus_10479#2      GGATCTTCATCTTCGATTCCACGCTTAGCACC---------------------------- 342
                       ********* *************** ******                            

consensus_10479#0      GTACTACCCATAAGTGCATTAGGTTGTAAATTAGTTTCAGTTTCGGG-AAGTATACGATA 478
consensus_10479#1      GTACTACCCATAAGTGCATTAGTTTGTAAATTAGGTTCAGTTTCGGGGAAGTATACAATA 473
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      CAATTGAGTGGACGGTGTAACCAAACCAGTACTATCTTCCATCGCCTCTTCTATAGTTTT 538
consensus_10479#1      CATTTGAGTGGCCGGTGTTACCAAACCAGTACTA-------------------------- 507
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      CTTACGTAGTTCAATCATACTTTGTGGAGTTTCCAAACCAGCACCAACACTGGATACACC 598
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      ACTAGGTGTTATTAATCCTCCAGCAGGTGTGACTAGGCCACCGACATCTAATGGTCGAGG 658
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      AATAGATCCTGCACTTGGCAAAGTAACAAGCATCTTTTTGGCTTCACTTTCAGCCATTGC 718
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      AGATGTTGCTGCTTGATCTTCATCACTCTCATCGTCCGTATCCATATCCTGATCACCTTC 778
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TTCACCTTCAGACTCTTCATCAGATTCCAACTCGCCCCAATAACTGATATTTCCATGAGC 838
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      GATTTGCTCATCAGCATCCTCAAAAGTGGTTGGTGGGGGTGGGGGTGGTGGTACACCGGC 898
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      AATATTACCTCCATTTCCAAACACATCTCCATAAACGGGACGTCCTAGCTCATCCACAGG 958
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      AGGTTTACCCCATCCGCCAGGGTGGTAACCAAATGCACAACCATCCGGAATAGGAGCGTT 1018
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TAGACCGGGAATCTTCAAATTGGGATACGAAGGAGGTGGACCATACCGTTGCATAGCAAT 1078
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      CAACCATGGAGGAGGATATCGCTCAGCACCGGAGCCGGATGGTAAACCTAGAGCATTCCG 1138
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      AAGCTCATCTGACATATTACCAGGCTTTTTCTCCTTCAATTTTACTTCGAATTCTTTGCC 1198
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TTCATAATAAAGATCGCCATGAATTGACAGTTTGGGTTTGGTTTGATACTTGAAGAAAGC 1258
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      ATCGTGCAATTTGTGATAATCGATATCCACCTTTCCAACTTTAGGACGAATTTTTTCACG 1318
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      CATTTTTGTTTTTAATGTTTTGTCAGAATCTTTGTCTTGTACCGTTTGTCGCATCTCCAT 1378
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TATTCCTGTGCGAGCAATGAAGTCGGGTAAGCGAAAAGGAGGTTTCTCGAAACCACGTTT 1438
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      ACCCTGTAGATATTTTCTTTTTGCACACCAGTGTTTGGGAACTGGTACAGTATTTCGATA 1498
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TGCCTTCAAGAAAGCTAGTAAAAGTGGATCTTTGGCACAGACATCCCACATTTCGATGAC 1558
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      ATCGGGGCGTGCTACCATCTGTTTGAGTGCAGCAACGCTAGGACGGTTGAGACGTTTTAA 1618
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      CTTTTTCTTGCTTAGTGCCTCAATCCCATTAGACCCTGAATCTAATCCCCCTGCAGAACC 1678
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      ACCTTTGGGCTGTGGACCTTTATTCGATTCAGGATCTTGACTTGGGAAACGCCGCCTGGC 1738
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TTCGTTTGCTGAAGCCTCTTCTGCAAGAAGTGCAGCAGTACGAGCCTTCCAATTGATGTC 1798
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      AGTATGTGATACTGGTTTAGAGGGAACAGAGTCTGCCTCATCATCAGCCAACTTGAAGCG 1858
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TTCGAACGGCCCTTTATATTGAAACTCTATAATTTCATCTTCTGGTTCAGGGTCACTTCC 1918
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TTCGTCTTCATGCACTCCATTAGGATAGTCTAAAACCCCATTTGACAAATTTGGCTGGTT 1978
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TTTCAGCTCTCTACGCCGCTTCAGTGAAGCTTTTTTCCTTAATTTCTTTTTCCTGTTACG 2038
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      TTCTTGTTGTCTACTGAGTCCATAAGAGAAATTAATAGAGTCAAACGACGGTTCAACTGA 2098
consensus_10479#1      ------------------------------------------------------------
consensus_10479#2      ------------------------------------------------------------
                                                                                   

consensus_10479#0      GTTCGTAAGAGTCAAGATCCTGAATCGAATAAAGGTCCACAGTCCAAA 2146
consensus_10479#1      ------------------------------------------------
consensus_10479#2      ------------------------------------------------