cluster # 1048

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Schistosoma mansoni
cluster # 1048 cluster # 1048 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1048#0 length = 956 sequences # 1

consensus_1048#1 length = 573 sequences # 1

consensusID : consensus_1048#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 956
fasta sequence

                              [GCCAACCTCTGGCACGAGGTCTATTTTGGCTAGTTCATTATCATCTACGGTTTATTTTTGTCATTCAAAGTTTTATGTACAATGGATTCTCGAAAACGATTATTTCAGTTGTTAGTCTGCTTTTATCGTTTTATTTCTTTGGGTACCCACTTTGTTAAGTATAACAAACACACACACACTGTCATCTACTTTTTCCAAATATTGTTAGAGTGAAGGAAACCGAAGAATCTAACCAACATACACAATCACACACTCTTGCGTATCATGTTTTGGTATTTCTAACCATCTTTATTTTCGCAAATTTCATTTGTCGTCTATTTCCCATCATCCAATAAATGCCTTTGTGTATATCGAGAAAAAGTGATTCTCAGCCAAGGATAACAGACAATGTAATAAGACACAAATTACTTGGTCTATTCAACCCTGTAATATTTCTCTCTTTTTTTATATCAAGTTCGCCATCTTTATTTTTGACTTATTCACATTGTTGATTGTCCTTTTATTTGTTACTGCTTGTTGCTATCTCTTTTTTAACTACCTGAATGAACTACCAAAACCGTACTACTCATTATCATCGTTATCATCTAGGAGTTCCTTGATTAATGTGGCACATTGATTNTCTCTTTCATTATTGGTAACATGAATTAATTAACTTCTCGATGAACTGTTCAATTTATGGTTATTATTATTTCCCATTTCTATTTCATCGAAAAGTGAATTATTCTTTCTGTACATATTTTTGTGTCGTAAACTGANAAGGAGTCATTCATCTTTGATGACAGATTTCATTATCAGCTGTCCTATCTTTAAACTCGTATTTCTACATACTATTGGCCTGNNTATATACTATTAATATGACATCNACTCTATCCTATCCTNNTGATAATATATTATATACACTTGAACTGGATNCAACTGATGTCCATTATTACGCACTTGGANTGTGAAAAAGGGAT]

[+] EMBL CD082179             [GCCAACCTCTGGCACGAGGTCTATTTTGGCTAGTTCATTATCATCTACGGTTTATTTTTGTCATTCAAAGTTTTATGTACAATGGATTCTCGAAAACGATTATTTCAGTTGTTAGTCTGCTTTTATCGTTTTATTTCTTTGGGTACCCACTTTGTTAAGTATAACAAACACACACACACTGTCATCTACTTTTTCCAAATATTGTTAGAGTGAAGGAAACCGAAGAATCTAACCAACATACACAATCACACACTCTTGCGTATCATGTTTTGGTATTTCTAACCATCTTTATTTTCGCAAATTTCATTTGTCGTCTATTTCCCATCATCCAATAAATGCCTTTGTGTATATCGAGAAAAAGTGATTCTCAGCCAAGGATAACAGACAATGTAATAAGACACAAATTACTTGGTCTATTCAACCCTGTAATATTTCTCTCTTTTTTTATATCAAGTTCGCCATCTTTATTTTTGACTTATTCACATTGTTGATTGTCCTTTTATTTGTTACTGCTTGTTGCTATCTCTTTTTTAACTACCTGAATGAACTACCAAAACCGTACTACTCATTATCATCGTTATCATCTAGGAGTTCCTTGATTAATGTGGCACATTGATTNTCTCTTTCATTATTGGTAACATGAATTAATTAACTTCTCGATGAACTGTTCAATTTATGGTTATTATTATTTCCCATTTCTATTTCATCGAAAAGTGAATTATTCTTTCTGTACATATTTTTGTGTCGTAAACTGANAAGGAGTCATTCATCTTTGATGACAGATTTCATTATCAGCTGTCCTATCTTTAAACTCGTATTTCTACATACTATTGGCCTGNNTATATACTATTAATATGACATCNACTCTATCCTATCCTNNTGATAATATATTATATACACTTGAACTGGATNCAACTGATGTCCATTATTACGCACTTGGANTGTGAAAAAGGGAT]




>consensus_1048#0
GCCAACCTCTGGCACGAGGTCTATTTTGGCTAGTTCATTATCATCTACGGTTTATTTTTG
TCATTCAAAGTTTTATGTACAATGGATTCTCGAAAACGATTATTTCAGTTGTTAGTCTGC
TTTTATCGTTTTATTTCTTTGGGTACCCACTTTGTTAAGTATAACAAACACACACACACT
GTCATCTACTTTTTCCAAATATTGTTAGAGTGAAGGAAACCGAAGAATCTAACCAACATA
CACAATCACACACTCTTGCGTATCATGTTTTGGTATTTCTAACCATCTTTATTTTCGCAA
ATTTCATTTGTCGTCTATTTCCCATCATCCAATAAATGCCTTTGTGTATATCGAGAAAAA
GTGATTCTCAGCCAAGGATAACAGACAATGTAATAAGACACAAATTACTTGGTCTATTCA
ACCCTGTAATATTTCTCTCTTTTTTTATATCAAGTTCGCCATCTTTATTTTTGACTTATT
CACATTGTTGATTGTCCTTTTATTTGTTACTGCTTGTTGCTATCTCTTTTTTAACTACCT
GAATGAACTACCAAAACCGTACTACTCATTATCATCGTTATCATCTAGGAGTTCCTTGAT
TAATGTGGCACATTGATTNTCTCTTTCATTATTGGTAACATGAATTAATTAACTTCTCGA
TGAACTGTTCAATTTATGGTTATTATTATTTCCCATTTCTATTTCATCGAAAAGTGAATT
ATTCTTTCTGTACATATTTTTGTGTCGTAAACTGANAAGGAGTCATTCATCTTTGATGAC
AGATTTCATTATCAGCTGTCCTATCTTTAAACTCGTATTTCTACATACTATTGGCCTGNN
TATATACTATTAATATGACATCNACTCTATCCTATCCTNNTGATAATATATTATATACAC
TTGAACTGGATNCAACTGATGTCCATTATTACGCACTTGGANTGTGAAAAAGGGAT

consensusID : consensus_1048#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [TCTTTTTTTATATCAAGTTCGCCATCTTTATTTTTGACTTATTCACATTGTTGATTGTCCTTTTATTTGTTACTGCTTGTTGCTATCTCTTTTTTAACTACCTGAATGAACTACCAAAACCGTACTACTCATTATCATCGTTATCATCTAGGAGTTCCTTGATTAATGTGGCACATTGATTTTCTCTTTCATTATTGTTAACATGAATTAATTAACTTCTCGATGAACTGTTCAAATTTATGGTTATTATTATTTCCCATTTCTATTTCATCGAAAAGTGAATTATTCTTTCTGTACATATTTTGTTGTCGTAAAACTGAAAAAGGAGTCAATTCACTCTTTGATGACAGATTTTCATTAATCAGCTGTCCTTATCTTTAAACTTCGTATTTTCTACATTACTATTGGCCCTGTTAATAATACCTATATATATTGAGCATCTCACTCTTATTCCTATCCTTTTTTGATTATTATTATTATTATTACTACTTTGAAACTGTGATTCGCATACTGATTGTTTCCCATTTATCTAACTGCTACTTGTGAGTTGTTGAAATAGATGTGAATTGGTGG]

[-] EMBL CD075795             [TCTTTTTTTATATCAAGTTCGCCATCTTTATTTTTGACTTATTCACATTGTTGATTGTCCTTTTATTTGTTACTGCTTGTTGCTATCTCTTTTTTAACTACCTGAATGAACTACCAAAACCGTACTACTCATTATCATCGTTATCATCTAGGAGTTCCTTGATTAATGTGGCACATTGATTTTCTCTTTCATTATTGTTAACATGAATTAATTAACTTCTCGATGAACTGTTCAAATTTATGGTTATTATTATTTCCCATTTCTATTTCATCGAAAAGTGAATTATTCTTTCTGTACATATTTTGTTGTCGTAAAACTGAAAAAGGAGTCAATTCACTCTTTGATGACAGATTTTCATTAATCAGCTGTCCTTATCTTTAAACTTCGTATTTTCTACATTACTATTGGCCCTGTTAATAATACCTATATATATTGAGCATCTCACTCTTATTCCTATCCTTTTTTGATTATTATTATTATTATTACTACTTTGAAACTGTGATTCGCATACTGATTGTTTCCCATTTATCTAACTGCTACTTGTGAGTTGTTGAAATAGATGTGAATTGGTGG]




>consensus_1048#1
TCTTTTTTTATATCAAGTTCGCCATCTTTATTTTTGACTTATTCACATTGTTGATTGTCC
TTTTATTTGTTACTGCTTGTTGCTATCTCTTTTTTAACTACCTGAATGAACTACCAAAAC
CGTACTACTCATTATCATCGTTATCATCTAGGAGTTCCTTGATTAATGTGGCACATTGAT
TTTCTCTTTCATTATTGTTAACATGAATTAATTAACTTCTCGATGAACTGTTCAAATTTA
TGGTTATTATTATTTCCCATTTCTATTTCATCGAAAAGTGAATTATTCTTTCTGTACATA
TTTTGTTGTCGTAAAACTGAAAAAGGAGTCAATTCACTCTTTGATGACAGATTTTCATTA
ATCAGCTGTCCTTATCTTTAAACTTCGTATTTTCTACATTACTATTGGCCCTGTTAATAA
TACCTATATATATTGAGCATCTCACTCTTATTCCTATCCTTTTTTGATTATTATTATTAT
TATTACTACTTTGAAACTGTGATTCGCATACTGATTGTTTCCCATTTATCTAACTGCTAC
TTGTGAGTTGTTGAAATAGATGTGAATTGGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1048#0      GCCAACCTCTGGCACGAGGTCTATTTTGGCTAGTTCATTATCATCTACGGTTTATTTTTG 60
consensus_1048#1      ------------------------------------------------------------
                                                                                  

consensus_1048#0      TCATTCAAAGTTTTATGTACAATGGATTCTCGAAAACGATTATTTCAGTTGTTAGTCTGC 120
consensus_1048#1      ------------------------------------------------------------
                                                                                  

consensus_1048#0      TTTTATCGTTTTATTTCTTTGGGTACCCACTTTGTTAAGTATAACAAACACACACACACT 180
consensus_1048#1      ------------------------------------------------------------
                                                                                  

consensus_1048#0      GTCATCTACTTTTTCCAAATATTGTTAGAGTGAAGGAAACCGAAGAATCTAACCAACATA 240
consensus_1048#1      ------------------------------------------------------------
                                                                                  

consensus_1048#0      CACAATCACACACTCTTGCGTATCATGTTTTGGTATTTCTAACCATCTTTATTTTCGCAA 300
consensus_1048#1      ------------------------------------------------------------
                                                                                  

consensus_1048#0      ATTTCATTTGTCGTCTATTTCCCATCATCCAATAAATGCCTTTGTGTATATCGAGAAAAA 360
consensus_1048#1      ------------------------------------------------------------
                                                                                  

consensus_1048#0      GTGATTCTCAGCCAAGGATAACAGACAATGTAATAAGACACAAATTACTTGGTCTATTCA 420
consensus_1048#1      ------------------------------------------------------------
                                                                                  

consensus_1048#0      ACCCTGTAATATTTCTCTCTTTTTTTATATCAAGTTCGCCATCTTTATTTTTGACTTATT 480
consensus_1048#1      -----------------TCTTTTTTTATATCAAGTTCGCCATCTTTATTTTTGACTTATT 43
                                       *******************************************

consensus_1048#0      CACATTGTTGATTGTCCTTTTATTTGTTACTGCTTGTTGCTATCTCTTTTTTAACTACCT 540
consensus_1048#1      CACATTGTTGATTGTCCTTTTATTTGTTACTGCTTGTTGCTATCTCTTTTTTAACTACCT 103
                      ************************************************************

consensus_1048#0      GAATGAACTACCAAAACCGTACTACTCATTATCATCGTTATCATCTAGGAGTTCCTTGAT 600
consensus_1048#1      GAATGAACTACCAAAACCGTACTACTCATTATCATCGTTATCATCTAGGAGTTCCTTGAT 163
                      ************************************************************

consensus_1048#0      TAATGTGGCACATTGATTNTCTCTTTCATTATTGGTAACATGAATTAATTAACTTCTCGA 660
consensus_1048#1      TAATGTGGCACATTGATTTTCTCTTTCATTATTGTTAACATGAATTAATTAACTTCTCGA 223
                      ****************** *************** *************************

consensus_1048#0      TGAACTGTTCAA-TTTATGGTTATTATTATTTCCCATTTCTATTTCATCGAAAAGTGAAT 719
consensus_1048#1      TGAACTGTTCAAATTTATGGTTATTATTATTTCCCATTTCTATTTCATCGAAAAGTGAAT 283
                      ************ ***********************************************

consensus_1048#0      TATTCTTTCTGTACATATTTTTGTGTCGTAAA-CTGANAA-GGAGTCA-TTCA-TCTTTG 775
consensus_1048#1      TATTCTTTCTGTACATATTTTGTTGTCGTAAAACTGAAAAAGGAGTCAATTCACTCTTTG 343
                      *********************  ********* **** ** ******* **** ******

consensus_1048#0      ATGACAGATTT-CATTA-TCAGCTGTCCT-ATCTTTAAACT-CGTATTT-CTACAT-ACT 829
consensus_1048#1      ATGACAGATTTTCATTAATCAGCTGTCCTTATCTTTAAACTTCGTATTTTCTACATTACT 403
                      *********** ***** *********** *********** ******* ****** ***

consensus_1048#0      ATTGGCC----------TGNNTATATACTATTAATATGACA---TCNACTCTATCCTATC 876
consensus_1048#1      ATTGGCCCTGTTAATAATACCTATATATATTGAGCATCTCACTCTTATTCCTATCCTTTT 463
                      *******          *   ******   * *  **  **   *     ******* * 

consensus_1048#0      CTNNTGATAATA--TATTATATACACTTGAACTGGATNCAACTGATGTCCATTATTACGC 934
consensus_1048#1      TTGATTATTATTATTATTATTACTACTTTGAAACTGTGATTCGCATACTGATTGTTTCCC 523
                       *  * ** **   ******    ****  *     *    *  **    *** ** * *

consensus_1048#0      ACTTG---GANTGTGAAAAAGGGAT------------------------- 956
consensus_1048#1      ATTTATCTAACTGCTACTTGTGAGTTGTTGAAATAGATGTGAATTGGTGG 573
                      * **     * **  *     *  *