These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 928 fasta sequence [TCATCTGAAATAGGTTTAGCCAAATCTAAATTCACATGAACACGATTCAGACGAA-TATTAGTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGA-GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC-AAAAATTGAA-AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA-AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA-ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATATTTTCTTTGGAAGGATAAACGAAATAAACAGCGGGAACATCTGGGATTTGTTCACGTGGCGAATGCAACATTAAATGTAGTGTCACACCAAGCATACGTAAATCCTTGACTGTTAATAACGGTGAGATGATATCTCTTCCCAGTTGGTCGTATATCAAGATTTTCCATTGTGGTCCGTCTGAAGAATTCTAAGGCGGGTTTAAATTGA] [+] EMBL CD186760 [TCATCTGAAATAGGTTTAGCCAAATCTAAATTCACATGAACACGATTCAGACGAA TATTAAAGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAA ] [+] EMBL CD113750 [ ATGAACACGATTCAGACGAA TATTAAAGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTTATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTAGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAAGCGAGTGGATTAAATTTTCCATATTCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACTATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAAT ] [+] EMBL CD113723 [ ATGAACACGATTCAGACGAA TATTAAAGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTTATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTAGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAAGAATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATTCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACTATCAGTGGGTGAGCTAA ] [+] EMBL CD113885 [ CACAGGAACTATTTGTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGA ] [+] EMBL CD113805 [ GAACTATTTGTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGG GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGCGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGCAGGGTATCACGAAAT ] [+] EMBL CD113754 [ cATGAGTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGT ATGGANGAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGGCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTACGGGCA ] [+] EMBL CD113831 [ tagtaact cATTAGTGATATCATGGATTAAACTTTGGTA GACAACTCGTGGTGTAATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACTATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAAT ] [+] EMBL CD165935 [ TATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGTAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATCATGCTGTTTGAGCTATTTCCTCCAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATCATGTGGA ] [+] EMBL CD165926 [ TATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAACAGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAACATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATAT AGGTGGga ] [+] EMBL CD165951 [ TATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGAT ] [-] EMBL CD165920 [ ATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAC AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTATCGCACGATTAAGGGCATAGA AGGTAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAAGACAAATAAAATTTGTATACTGATCGAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATCCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTAGCATATAATGTGGATATT ] [-] EMBL CD165906 [ ATTCATAAAAAGTGGATTCCTAGAATCTCGAAGGCTATCACGAATTTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAAATTGAA AATAGTCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATA ] [-] EMBL CD165900 [ TCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCGA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATA ] [-] EMBL CD113781 [ GAGTGGATTAAATTGGCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCGA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATATTTTCTTTGGAAGGATAAACGAAATAAACAGCGGGAACATCTGGGATTTGTTCACGTGGCGAATGCAACATTAAATGTAGTGTCACACCAAGCATACGTAAATCCTTGACTGTTAATAACGGTGAGATGATATCTCTTCCCAGTTGGTCGTATATCAAGATTTTCCATTGTGGTCCGTCTGAAGAATTCTAAGGCGGGTTTAA ] [-] EMBL CD113814 [ gCAGAGCCACTTCTGTAGCTTTCGCACGATNAAGGGCATAAA AGGAAGAAGGACTATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATACGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATATTTTCTTTGGAAGGATAAACGAAATAAACAGCGGGAACATCTGGGATTTGTTCACGTGGCGAATGCAACATTAAATGTAGTGTCACACCAAGCATACGTAAATCCTTGACTGTTAATAACGGTGAGATGATATCTCTTCCCAGTTGGTCGTATATCAAGATTTTCCATTGTGGTCCGTCTGAAGAATTCTAAGGCGCGTTTCAATTGA] consensusID : consensus_10480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 469 fasta sequence [CACAGTAACTCATGTGTGATATCATGGATTGAACTTTGGTAGGACAACTCGTGGTGTAATGGAGAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGA-GAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGGATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAATTGAAAATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATACACTTCTGTAGCTTTCGCACGATTAAGGGCATAAAAGGCAGAAGGACCATCAG] [+] EMBL CD113707 [CACAGTAACTCATGTGTGATATCATGGATTGAACTTTGGTAGGACAACTCGTGGTGTAATGGAGAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGA GAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGGATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAATTGAAAATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATACACTTCTGTAGCTTTCGCACGATTAAGGGCATAAAAGGCAGAAGGACCATCAG] [+] EMBL CD113769 [ CTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGAGAGTTCATTTGATGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10480#0 TCATCTGAAATAGGTTTAGCCAAATCTAAATTCACATGAACACGATTCAGACGAATATTA 60 consensus_10480#1 ---------------------------------------------CACAGTAACTCATGT 15 *** ** consensus_10480#0 GTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGAGAAGCCAAATCT 120 consensus_10480#1 GTGATATCATGGATTGAACTTTGGTAGGACAACTCGTGGTGTAATGGAGAAGCCAAATCT 75 *************** ******************************************** consensus_10480#0 AAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATT 180 consensus_10480#1 AAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATT 135 ************************************************************ consensus_10480#0 TGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCA 240 consensus_10480#1 TGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCA 195 ************************************************************ consensus_10480#0 GACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAA 300 consensus_10480#1 GACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAA 255 ************************************************************ consensus_10480#0 TTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCA 360 consensus_10480#1 TTCCTAGGATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCA 315 ******* **************************************************** consensus_10480#0 GAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAATTGAA 420 consensus_10480#1 GAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAATTGAA 375 ************************************************************ consensus_10480#0 AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCA 480 consensus_10480#1 AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATACACTTCTGTAGCTTTCGCA 435 **************************************** ******************* consensus_10480#0 CGATTAAGGGCATAAAAGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCA 540 consensus_10480#1 CGATTAAGGGCATAAAAGGCAGAAGGACCATCAG-------------------------- 469 ******************* ************** consensus_10480#0 TCCTCCAAACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAG 600 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 TTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATA 660 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 AAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATA 720 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 TTTTCTTTGGAAGGATAAACGAAATAAACAGCGGGAACATCTGGGATTTGTTCACGTGGC 780 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GAATGCAACATTAAATGTAGTGTCACACCAAGCATACGTAAATCCTTGACTGTTAATAAC 840 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GGTGAGATGATATCTCTTCCCAGTTGGTCGTATATCAAGATTTTCCATTGTGGTCCGTCT 900 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GAAGAATTCTAAGGCGGGTTTAAATTGA 928 consensus_10480#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||