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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 928 fasta sequence
[TCATCTGAAATAGGTTTAGCCAAATCTAAATTCACATGAACACGATTCAGACGAA-TATTAGTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGA-GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC-AAAAATTGAA-AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA-AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA-ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATATTTTCTTTGGAAGGATAAACGAAATAAACAGCGGGAACATCTGGGATTTGTTCACGTGGCGAATGCAACATTAAATGTAGTGTCACACCAAGCATACGTAAATCCTTGACTGTTAATAACGGTGAGATGATATCTCTTCCCAGTTGGTCGTATATCAAGATTTTCCATTGTGGTCCGTCTGAAGAATTCTAAGGCGGGTTTAAATTGA]
[+] EMBL CD186760 [TCATCTGAAATAGGTTTAGCCAAATCTAAATTCACATGAACACGATTCAGACGAA TATTAAAGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAA ]
[+] EMBL CD113750 [ ATGAACACGATTCAGACGAA TATTAAAGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTTATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTAGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAAGCGAGTGGATTAAATTTTCCATATTCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACTATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAAT ]
[+] EMBL CD113723 [ ATGAACACGATTCAGACGAA TATTAAAGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTTATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTAGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAAGAATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATTCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACTATCAGTGGGTGAGCTAA ]
[+] EMBL CD113885 [ CACAGGAACTATTTGTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGA ]
[+] EMBL CD113805 [ GAACTATTTGTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGG GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGCGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGCAGGGTATCACGAAAT ]
[+] EMBL CD113754 [ cATGAGTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGT ATGGANGAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGGCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTACGGGCA ]
[+] EMBL CD113831 [ tagtaact cATTAGTGATATCATGGATTAAACTTTGGTA GACAACTCGTGGTGTAATGGA GAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACTATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAAT ]
[+] EMBL CD165935 [ TATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGTAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATCATGCTGTTTGAGCTATTTCCTCCAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATCATGTGGA ]
[+] EMBL CD165926 [ TATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAACAGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAACATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATAT AGGTGGga ]
[+] EMBL CD165951 [ TATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGAT ]
[-] EMBL CD165920 [ ATTCATAAAAAGTGAATTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAC AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTATCGCACGATTAAGGGCATAGA AGGTAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAAGACAAATAAAATTTGTATACTGATCGAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATCCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTAGCATATAATGTGGATATT ]
[-] EMBL CD165906 [ ATTCATAAAAAGTGGATTCCTAGAATCTCGAAGGCTATCACGAATTTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAAATTGAA AATAGTCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATA ]
[-] EMBL CD165900 [ TCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGC AAAAATTGAA AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCGA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATA ]
[-] EMBL CD113781 [ GAGTGGATTAAATTGGCCATATCCACTTCTGTAGCTTTCGCACGATTAAGGGCATAAA AGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCGA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATATTTTCTTTGGAAGGATAAACGAAATAAACAGCGGGAACATCTGGGATTTGTTCACGTGGCGAATGCAACATTAAATGTAGTGTCACACCAAGCATACGTAAATCCTTGACTGTTAATAACGGTGAGATGATATCTCTTCCCAGTTGGTCGTATATCAAGATTTTCCATTGTGGTCCGTCTGAAGAATTCTAAGGCGGGTTTAA ]
[-] EMBL CD113814 [ gCAGAGCCACTTCTGTAGCTTTCGCACGATNAAGGGCATAAA AGGAAGAAGGACTATCAGTGGGTGAGCTAAGAGTCAACAAATCATCCTCCAA ACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAGTTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATACGCGTGATATTGGACTGATAAAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATATTTTCTTTGGAAGGATAAACGAAATAAACAGCGGGAACATCTGGGATTTGTTCACGTGGCGAATGCAACATTAAATGTAGTGTCACACCAAGCATACGTAAATCCTTGACTGTTAATAACGGTGAGATGATATCTCTTCCCAGTTGGTCGTATATCAAGATTTTCCATTGTGGTCCGTCTGAAGAATTCTAAGGCGCGTTTCAATTGA]
consensusID : consensus_10480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 469 fasta sequence
[CACAGTAACTCATGTGTGATATCATGGATTGAACTTTGGTAGGACAACTCGTGGTGTAATGGAGAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGA-GAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGGATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAATTGAAAATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATACACTTCTGTAGCTTTCGCACGATTAAGGGCATAAAAGGCAGAAGGACCATCAG]
[+] EMBL CD113707 [CACAGTAACTCATGTGTGATATCATGGATTGAACTTTGGTAGGACAACTCGTGGTGTAATGGAGAAGCCAAATCTAAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATTTGA GAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCAGACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAATTCCTAGGATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCAGAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAATTGAAAATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATACACTTCTGTAGCTTTCGCACGATTAAGGGCATAAAAGGCAGAAGGACCATCAG]
[+] EMBL CD113769 [ CTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGAGAGTTCATTTGATGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10480#0 TCATCTGAAATAGGTTTAGCCAAATCTAAATTCACATGAACACGATTCAGACGAATATTA 60
consensus_10480#1 ---------------------------------------------CACAGTAACTCATGT 15
*** **
consensus_10480#0 GTGATATCATGGATTAAACTTTGGTAGGACAACTCGTGGTGTAATGGAGAAGCCAAATCT 120
consensus_10480#1 GTGATATCATGGATTGAACTTTGGTAGGACAACTCGTGGTGTAATGGAGAAGCCAAATCT 75
*************** ********************************************
consensus_10480#0 AAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATT 180
consensus_10480#1 AAACTGCGATCTAAAATAATCAAAAGTGGACGCTGAAATAAGTTTGGTGGTGAGTTCATT 135
************************************************************
consensus_10480#0 TGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCA 240
consensus_10480#1 TGAGAGTTCCTGTTTAAAAGACTAAGTGGTGATGAAGAGTTCAATCCCAGACGTTCTCCA 195
************************************************************
consensus_10480#0 GACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAA 300
consensus_10480#1 GACGAATCGTCATTTGCAGTGATACCGTAACCGCGTGCTGTATTATTCATAAAAAGTGAA 255
************************************************************
consensus_10480#0 TTCCTAGAATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCA 360
consensus_10480#1 TTCCTAGGATCTCGAAGGCTATCACGAAATTTAGAATCCAACTGGCATGCTACCATTTCA 315
******* ****************************************************
consensus_10480#0 GAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAATTGAA 420
consensus_10480#1 GAAGCATTGCCACGAGGACAACGTATAATAGGTATTGAGCCAAGTGTTGCAAAAATTGAA 375
************************************************************
consensus_10480#0 AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATCCACTTCTGTAGCTTTCGCA 480
consensus_10480#1 AATAATCCATCAACAACCGAGTGGATTAAATTTTCCATATACACTTCTGTAGCTTTCGCA 435
**************************************** *******************
consensus_10480#0 CGATTAAGGGCATAAAAGGAAGAAGGACCATCAGTGGGTGAGCTAAGAGTCAACAAATCA 540
consensus_10480#1 CGATTAAGGGCATAAAAGGCAGAAGGACCATCAG-------------------------- 469
******************* **************
consensus_10480#0 TCCTCCAAACAAATAAAATTTGTATACTGATCAAAAACTTTCGAGATTTGATGAACACAG 600
consensus_10480#1 ------------------------------------------------------------
consensus_10480#0 TTCTCAGATAATGCTGTTTGAGCTATTTCCTCAAGGTATTCGCGTGATATTGGACTGATA 660
consensus_10480#1 ------------------------------------------------------------
consensus_10480#0 AAATTCAGGTAATACGAATCGTATCTACCTGCCTCAAAGTCCTTGCATATAATGTGGATA 720
consensus_10480#1 ------------------------------------------------------------
consensus_10480#0 TTTTCTTTGGAAGGATAAACGAAATAAACAGCGGGAACATCTGGGATTTGTTCACGTGGC 780
consensus_10480#1 ------------------------------------------------------------
consensus_10480#0 GAATGCAACATTAAATGTAGTGTCACACCAAGCATACGTAAATCCTTGACTGTTAATAAC 840
consensus_10480#1 ------------------------------------------------------------
consensus_10480#0 GGTGAGATGATATCTCTTCCCAGTTGGTCGTATATCAAGATTTTCCATTGTGGTCCGTCT 900
consensus_10480#1 ------------------------------------------------------------
consensus_10480#0 GAAGAATTCTAAGGCGGGTTTAAATTGA 928
consensus_10480#1 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||