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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 858 fasta sequence
[TTACATAGGGAAAAAATTGCTCTTCTTCGAGATATAGGACATGTTCCAATTATACTTGTTGGGAATAAAGTAGATTTAGCGAATCAAAGAAATGTGTCACAGAGAGAAGCTTTCGATTATGCTGCAAGAAAGAATATAGAATACATTGAAACTTCAGCTAAAACAAATCACAATGTTCAACAGGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATTACT-GTTGTAATACCCT-ATCCTAAAAAGT-ATTC-ATTGTTTTTA-TTA-AAATAAAAAGACATTTTTTTGGG-GGCCCCCTTAAGCTTACTTTACATCTATT-AAAATCC-TGTATTTTTG-ATTG-AAATGTACTACTAATCCTTTGAGATAGTACATACAAGACATTATGTATTATCATTATCATTATTATCTAATCATGTGTGTAATATTAAGGGTTT]
[+] EMBL CD131323 [TTACATAGGGAAAAAATTGCTCTTCTTCGAGATATAGGACATGTTCCAATTATACTTGTTGGGAATAAAGTAGATTTAGCGAATCAAAGAAATGTGTCACAGAGAGAAGCTTTCGATTATGCTGCAAGAAAGAATATAGAATACATTGAAACTTCAGCTAAAACAAATCACAATGTTCAACAGGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCGTCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATNTGTCCATCGCTTGTACCTTCTCGTTACATC ]
[+] EMBL BG932519 [ cagGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCt ]
[+] EMBL CD144790 [ AAACATGCAGATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAGGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATT ]
[+] EMBL CD144807 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATT ]
[+] EMBL CD144795 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAGTAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATT ]
[+] EMBL CD144721 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTC AAAAAAAAACAAAACAAACATT ]
[+] EMBL CD144722 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGT ]
[+] EMBL CD144789 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGT ]
[+] EMBL CD144698 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGT ]
[+] EMBL CD144708 [ AAACATGCAAGTACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATCTGT ]
[+] EMBL CD144802 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTCGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCA ]
[-] EMBL CD071851 [ AACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGTTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAGAAATCTGAAGAAAATATTTATGTAATTCAATAAACAAATAAAAAAATGAGTGGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGATTATTCTAGAAAGTCTC GTTAAATCAT ]
[+] EMBL AW146524 [ AACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCAT CCCCCCCCGTTTGTTTTTGTTTAG CCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATC TTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTC AAAAAAAACAAAACAAACATTACTGGTTGTAATACCCTAATCCTAAAAAGT ATTC ATTGTTTTTA TTA AAATAAAAAGACATTTTTTTGGG GGCCCCCTTAAGCTTACTTTACATCTATT AAAATCC TGTATTTTTG ATTG AAATGTACTACTAATCCTTTGAGA ]
[+] EMBL CD140629 [ AATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAGACAAACATTACT GTTGTAGTACCCT ATCATATAAAGTAATTCAATTGTTTTTATTTATAATTAAATAGACATTTTTTTGGGTGTCTCACTTAAGCTTACTTTACATCTATTAAAAATCCATGTATATTTGAATTGAAAATGTACTACTAATCATTTGAAGTAGTACATACAAGACATTATGTATTATCATTATCATTATTATCTAATCATGTGTGTAATATTAAGGGTTT]
consensusID : consensus_10482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 721 fasta sequence
[TAAGAACACTCATTTCAANCTTGTCTCACTGTATTGAAACTAAGGAGACAAAATCATTTGACTCCTGATAATCTTTATCTGCCACAGTGTACAAAGCAGAAGGAAACTGAATTTATTCATATTTTCGCAGGAAAAGTAAAAATTATTTGTTGAATTTTAGTCAAAATGGCGTTACCTTTGGAACGCATCTATCTTGGTATGTTAGGTGTTGGGACTGTTGGTAAAAGTGCATNAACATNGCAATTTATGTATGACGAATTNGTTGATGAATATGAACCAACAAAATCGGATTCTTATTTGGAAAAAAGTNTCTTTAAGAGGTCATGACGTAGGANGTTTCAGNTCTTGATACAGCCGGTCAAGAATCATATGCCGGTATAACAGAAACGGCTTATCGTACTTGTGATGGATTCATTATTGTATTTTCAATAACTGACATAGCTTCATTTTACGCTGTTAATGATTTTATGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGANAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGANAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCA]
[+] EMBL SMAA80774 [TAAGAACACTCATTTCAANCTTGTCTCACTGTATTGAAACTAAGGAGACAAAATCATTTGACTCCTGATAATCTTTATCTGCCACAGTGTACAAAGCAGAAGGAAACTGAATTTATTCATATTTTCGCAGGAAAAGTAAAAATTATTTGTTGAATTTTAGTCAAAATGGCGTTACCTTTGGAACGCATCTATCTTGGTATGTTAGGTGTTGGGACTGTTGGTAAAAGTGCATNAACATNGCAATTTATGTATGACGAATTNGTTGATGAATATGAACCAACAAAATCGGATTCTTATTTGGAAAAAAGTNTCTTTAAGAGGTCATGACGTAGGANGTTTCAGNTCTTGATACA ]
[+] EMBL CD144797 [ tAACATTGCAATTTATGTATGACGAATTTGTTGATGAATATGAACCAACAAAATCGGATTCTTA TTCGAAAAAAGTTTCTTTAAGAGGTCATGACGTA GAAGTTTCAGTTCTTGATACAGCCGGTCAAGAATCATATGCCGGTATAACAGAAACGGCTTATCGTACTTGTGATGGATTCATTATTGTATTTTCAATAACTGACATAGCTTCATTTTACGCTGTTAATGATTTTATGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGANAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGANAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCA]
consensusID : consensus_10482#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence
[CTTGATACAGCCGGTCAAGAATCATATGCCGGTATAACAGAAACAGCTTATCGTACTTGTGATGGATTCATTATTGTATTTTCAATAACTGACATAGCTTCATTTTACGCTGTTAATGATTTTATGGAAAAAATTGCTCTTCTTCGAGATATA]
[+] EMBL CD077453 [CTTGATACAGCCGGTCAAGAATCATATGCCGGTATAACAGAAACAGCTTATCGTACTTGTGATGGATTCATTATTGTATTTTCAATAACTGACATAGCTTCATTTTACGCTGTTAATGATTTTATGGAAAAAATTGCTCTTCTTCGAGATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10482#1 TAAGAACACTCATTTCAANCTTGTCTCACTGTATTGAAACTAAGGAGACAAAATCATTTG 60
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 ---TTACATAGGGAAAAAATTGCTCTTCTTCGAGATATAGGACATGTTCCAATTATACTT 57
consensus_10482#1 ACTCCTGATAATCTTTATCTGCCACAGTGTACAAAGCAGAAGGAAACTGAATTTATTCAT 120
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 GTTGGGAATAAAGTAGATTTAGCGAATCAAAGAAATGTGTCACAGAGAGAAGCTTTCGAT 117
consensus_10482#1 ATTTTCGCAGGAAAAGTAAAAATTATTTGTTGAATTTTAGTCAAAATGGCGTTACCTTTG 180
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 TATGCTGCAAGAAAGAATATAGAATACATTGAAACTTCAGCTAAAACAAATCACAATGTT 177
consensus_10482#1 GAACGCATCTATCTTGGTATGTTAGGTGTTGGGACTGTTGGTAAAAGTGCATNAACATNG 240
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 CAACAGGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAA 237
consensus_10482#1 CAATTTATGTATGACGAATTNGTTGATGAATATGAACCAACAAAATCGGATTCTTATTTG 300
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 CCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTG 297
consensus_10482#1 GAAAAAAGTNTCTTTAAGAGGTCATGACGTAGGANGTTTCAGNTCTTGATACAGCCGGTC 360
consensus_10482#2 --------------------------------------------CTTGATACAGCCGGTC 16
consensus_10482#0 AAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAA 357
* *** *
consensus_10482#1 AAGAATCATATGCCGGTATA-----ACAGAAACGGCTTATCG-TACTTGTGATGGATTCA 414
consensus_10482#2 AAGAATCATATGCCGGTATA-----ACAGAAACAGCTTATCG-TACTTGTGATGGATTCA 70
consensus_10482#0 AAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAG 417
** *** * ** * ** * * * * **** * ** * ** *
consensus_10482#1 TTATTGTATTTTCAATAACTGAC-ATAGCTTCATTTTACGC-----TGTTAATGATT--- 465
consensus_10482#2 TTATTGTATTTTCAATAACTGAC-ATAGCTTCATTTTACGC-----TGTTAATGATT--- 121
consensus_10482#0 AAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGC 477
* * * ***** ** * ** *** *** * * **** ** **
consensus_10482#1 ----------TTATGTATTTT-ATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCA 514
consensus_10482#2 ----------TTATGGA-----AAAAATTGCTCTTCTTCGAGATATA------------- 153
consensus_10482#0 CCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCA 537
***** * * ** * *
consensus_10482#1 AATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTA 574
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 CATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGT 597
consensus_10482#1 TAAATCCTGANAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATA 634
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 ACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATTACTGTTGTAAT 657
consensus_10482#1 AACAAATAAAAAAATGAGTTGAGAATGTACACCTGANAATATTGTTTATTAATGTTTAGA 694
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 ACCCTATCCTAAAAAGTATTCATTGTTTTTATTAAAATAAAAAGACATTTTTTTGGGGGC 717
consensus_10482#1 CTAGACTAGAAAGTCTCTTTTCTATCA--------------------------------- 721
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 CCCCTTAAGCTTACTTTACATCTATTAAAATCCTGTATTTTTGATTGAAATGTACTACTA 777
consensus_10482#1 ------------------------------------------------------------
consensus_10482#2 ------------------------------------------------------------
consensus_10482#0 ATCCTTTGAGATAGTACATACAAGACATTATGTATTATCATTATCATTATTATCTAATCA 837
consensus_10482#1 ---------------------
consensus_10482#2 ---------------------
consensus_10482#0 TGTGTGTAATATTAAGGGTTT 858
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||