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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1330 fasta sequence
[GTATCTGTCTGCATTCAGTGCGAAAAATATAAGTGGAAAGTGGCTTAGTTCCCTGACTGCTGATGTGTTAGACAAGTATGGGGTTCAAAAGATTGGTCATCAGATAATCATATTGGAGAAAGTCAAGCAATTACAATACCAGTTTTCATCTTTTGATAACGAAACGCTTCAGTCAGTTTTACTACGCGTCTCACGTTCGTGCACATGTATTATCACTGCAATAAATTCTCTTATGGCTATAACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGCTGCTTCTTACATTCTCAGCTGTATACTGAACCTAATGTCTACAATTGCAAATGCTGCGTCCTGGCTAGAACGGGGTTTAATTTTCGGTCCACGATAAACAATATCCACGTAATTGTTTCTGTTCAGGATGAATCCCCAGCATTTAGTACTGGAAAAGTTACCAAAGGAGATGAAGTGATTGAAGTAAATGAACAAATAGTTGTAAATTGGTTGGCTTCACTATCGCGTCGCTGATTTAATGCGGCATTCTTCACAGCACATTAGTTTGAGATTGCGAAAGCGGCCCTCTCATTCCAACGATTTTATTGGTTTTCCTGGGGCCGGGCGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGAC-AGCGGAATAAACGATACGAGTGTGATCTCATCTAATATAACCTACTCAAAAAAATACAAGTCTGTCAATACTTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTCCCTAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCTAATGGCAACGGGGAA]
[-] EMBL CD154680 [GTATCTGTCTGCATTCAGTGCGAAAAATATAAGTGGAAAGTGGCTTAGTTCCCTGACTGCTGATGTGTTAGACAAGTATGGGGTTCAAAAGATTGGTCATCAGATAATCATATTGGAGAAAGTCAAGCAATTACAATACCAGTTTTCATCTTTTGATAACGAAACGCTTCAGTCAGTTTTACTACGCGTCTCACGTTCGTGCACATGTATTATCACTGCAATAAATTCTCTTATGGCTATAACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGCTGCTTCTTACATTCTCAGCTGTATA ]
[+] EMBL CD116648 [ TCACTGCAATAAATTCTCTTATGGCTATAACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGCTGCTTCTTACATTCTCAGCTGTATACTGAACCTAATGTCTACAATTGCAAATGCTGCGTCCTGGCTAGAACGGGGTTTAATTTTCGGTCCACGATAAACAATATCCACGTAATTGTTTCTGTTCAGGATGAATCCCCAGCATTTAGTACTGGAAAAGTTACCAAAGGAGATGAAGTGATTGAAGTAAATGAACAAATAGTTGTAAATTGGTTGGCTTCACTATCGCGTCGCTGATTTAATGCGGCATTCTTCACAGCACATTAGTTTGAGATTGCGAAAGCGGCCCTCTCATTCCAACGATTTTATTGGTTTTCCTGGGGCCGGGCGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACAT ]
[+] EMBL CD117140 [ TCACTGCAATAAATTCTCTTATGGCTATAACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGCTGCTTCTTACATTCTCAGCTGTATACTGAACCTAATGTCTACAATTGCAAATGCTGCGTCCTGGCTAGAACGGGGTCTAATTTTCGGTCCACGATAAACAATATCCACGTAATTGTTTCTGTTCAGGATGAATCCCCAGCATTTAGTACTGGAAAAGTTACCAAAGGAGATGAAGTGATTGAAGTAAATGAACAAATAGTTGTAAATTGGTTGGCTTCACTATCGCGTCGCTGATTTAATGCGGCATTCTTCACAGCACATTAGTTTGAGATTGCGAAAGCGACCCTCTCATTCCAACGATTTTATTGGTTTTCCTGGGGCCGGGCGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTT ]
[+] EMBL CD200695 [ CGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTT ]
[+] EMBL CD200955 [ CGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAAACGCGAGGTGCGTATATATTTACATGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCCTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAG ]
[+] EMBL CD149368 [ TGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTTTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATa ]
[+] EMBL CD149312 [ CGTATATATTTACAATAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTTCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTACTGCATCTGGGTTGCTATCCTCT ]
[+] EMBL CD149257 [ CGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCACGAAACCACCTGTGATCAAACATCTGTTTGCTCACCTACATCGACATCTCCACCTGAATCCCAATCAATAGTTAGAGTATCTGGGTTGCTATCCTC ]
[+] EMBL CD199654 [ CTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAAT ]
[+] EMBL CD182003 [ TAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAACTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTGATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGNGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTT ]
[-] EMBL CD093331 [ AGTTAGTGTATNTGGGGTGNGAATCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTC ]
[-] EMBL CD093261 [ AGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTTCAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTC ]
[-] EMBL CD093171 [ AGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCGTCTTC ]
[-] EMBL CD149580 [ GTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGAC AGCGGAATAAACGATACGAGTGTGATCTCATCTAATATAACCTACTCAAAAAAATACAAGTCTGTCAATACTTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTCCCTAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCTAATGGCAACGGGGAA]
[-] EMBL CD149469 [ CATCCTGGTACTGCAACGTTTGACTAACAGAATAAACGATACGAGTGTGATCTCATCTAATATAACATACTCAAAAAAATACAAGTCTGTCAATACTTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTCCATAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCCAATGGCATCGGGGAA]
[-] EMBL CD149615 [ AGTCTGTCAATACTTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTCCCTAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCTAATGGCAACGGGGAA]
consensusID : consensus_10490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[CGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGACAACGGAATAAACGATACGAGTGTGATCTCATCTAATATAACATACTCAAAATACGTCATCTCAGAAAAAACTTAGTCCTTCTTCTTCGCTTCGTCACTGTAGTAGCTCATCTCCTAAGTTTCATGCTCTGGACAAAC]
[+] EMBL CD178526 [CGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGACAACGGAATAAACGATACGAGTGTGATCTCATCTAATATAACATACTCAAAATACGTCATCTCAGAAAAAACTTAGTCCTTCTTCTTCGCTTCGTCACTGTAGTAGCTCATCTCCTAAGTTTCATGCTCTGGACAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10490#0 GTATCTGTCTGCATTCAGTGCGAAAAATATAAGTGGAAAGTGGCTTAGTTCCCTGACTGC 60
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 TGATGTGTTAGACAAGTATGGGGTTCAAAAGATTGGTCATCAGATAATCATATTGGAGAA 120
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 AGTCAAGCAATTACAATACCAGTTTTCATCTTTTGATAACGAAACGCTTCAGTCAGTTTT 180
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 ACTACGCGTCTCACGTTCGTGCACATGTATTATCACTGCAATAAATTCTCTTATGGCTAT 240
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 AACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGC 300
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 TGCTTCTTACATTCTCAGCTGTATACTGAACCTAATGTCTACAATTGCAAATGCTGCGTC 360
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 CTGGCTAGAACGGGGTTTAATTTTCGGTCCACGATAAACAATATCCACGTAATTGTTTCT 420
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 GTTCAGGATGAATCCCCAGCATTTAGTACTGGAAAAGTTACCAAAGGAGATGAAGTGATT 480
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 GAAGTAAATGAACAAATAGTTGTAAATTGGTTGGCTTCACTATCGCGTCGCTGATTTAAT 540
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 GCGGCATTCTTCACAGCACATTAGTTTGAGATTGCGAAAGCGGCCCTCTCATTCCAACGA 600
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 TTTTATTGGTTTTCCTGGGGCCGGGCGGCGTCATCGCCTAATAGTCAACCAGATACCACC 660
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 TGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCG 720
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 TCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTC 780
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 TGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGT 840
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 TAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTAC 900
consensus_10490#1 ------------------------------------------------------------
consensus_10490#0 ATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAG 960
consensus_10490#1 ----------------------------------------CGTGCTCATATATCTTTTAG 20
********************
consensus_10490#0 ATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACC 1020
consensus_10490#1 ATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACC 80
************************************************************
consensus_10490#0 AAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATC 1080
consensus_10490#1 AAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATC 140
************************************************************
consensus_10490#0 GTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGACAGCGGAATAAA 1140
consensus_10490#1 GTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGACAACGGAATAAA 200
************************************************** *********
consensus_10490#0 CGATACGAGTGTGATCTCATCTAATATAACCTACTCAAAAAAATACAAGTCTGTCAATAC 1200
consensus_10490#1 CGATACGAGTGTGATCTCATCTAATATAACATACTCAAAATACGTCATCTCAGAAAAAAC 260
****************************** ********* * ** ** * ** **
consensus_10490#0 TTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTC 1260
consensus_10490#1 TT--AGTCCTTCTTCTTCGCTTCGTCACTGTAGTAGCTCATCTCCTAAGTTTCATGCT-- 316
** ** * * ** * * * * * * **** * ** * *
consensus_10490#0 CCTAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCTAATGG 1320
consensus_10490#1 CTGGACAAAC-------------------------------------------------- 326
* *** *
consensus_10490#0 CAACGGGGAA 1330
consensus_10490#1 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||