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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 856 fasta sequence
[GAGCCATATTCGGCCGAGGGGTTGAACCACTGCACGATAGGTCTTGTATTCTCGATCAACTGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA-TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGTAAACAGCACAACTTGGTAGTTTATCAATGCTGTATTTGTAATATATGTTACTGTTTTTGTACATCCCGATATTCTTTTTTCT-AAATATATCGCGTAGT]
[+] EMBL CD081746 [GAGCCATATTCGGCCGAGGGGTTGAACCACTGCACGATAGGTCTTGTATTCTCGATCAACTGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGTAAACAGCACAACTTGGTAGTTTATCAATGCTGTATTNGTAATATATGTTACTGTTTTTGTACATCCCGATATTCTTTNTTCT AAATATATCGCGTAGT]
[+] EMBL CD137088 [ ACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAAAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAA ]
[-] EMBL CD136697 [ GAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAATCCGCTTTTGCAGACCGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCTTTG AACAAACGCACTTACTCAANTACAAGATACAGAAATCCAANCCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGG ]
[+] EMBL CD082658 [ GGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGT AACAGCACAACTTGGTAGTTTATCAATGCTGTATTTGT ATATATNGTACTGTTTTTGTACATCCNGATATTC TNTTTCT AAATATATCG ]
[-] EMBL CD139394 [ CTACTGGATAAACGCAAAATCGCTTATGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCGTGTCACAAACGCACTTACTCAAATACAAGATACAGAAATCCAAACCGACAGGAACTTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTAT ]
[+] EMBL CD139314 [ TACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTA ]
[+] EMBL CD139294 [ TACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTA ]
[-] EMBL CD139239 [ ACTTGATANACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAGATTGTACCGAAACAACAAGAGGCAAGCCCCAAGAAATCTAT ]
[+] EMBL CD139345 [ ACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCA CCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTA ]
[+] EMBL CD137380 [ CGCTTATGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGA ]
[-] EMBL CD076254 [ GGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGTAAACAGCACAACTTGGTAGTTTATCAATGCTGTATTTGTAATATATGTTACTGTTTTTGTACATCCCGATATTCTTTTTTCTAAAATATATCGC ]
[-] EMBL BG932852 [ TTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTG ]
[-] EMBL CD075480 [ GTAATTATGAAATATTTCTCAAGGCGCTGAAAATGGAATCTGTATTTGATGCCAAAAACGCCTTTCTGGATGTTGTTTATTGGTTTAGCCAAGTTTTTCCCATTATAGTTGGTGTTGTCTGGGGTGAACCCTCGTTTCCAGGCTTTATGCCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTTTATGCATACGCTCCAATTTATCAACGTGTTAATGAGAATGAATATGGTGGATATGGGGAGATCATAAAAAAAGGATTAATGCCAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCCCGGTGTAACCAGCCCAACTTGGTAGTTTATCAATGCTGTATTTGTAAAATATGTTACTGTTTTTGTACATCCCGATATTCTTTTTTTTAAAATATATgg ]
consensusID : consensus_10495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 382 fasta sequence
[GGCTTCTTCAAACTAAGTTTTCACTCTGCAAGCTAACAATCATAATAATAAATCTGACCATAATCATAACAAGGTTAAACCACTGCACGATAGGTCTTGTATTCTCGATCAACTGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGA]
[+] EMBL CD190610 [GGCTTCTTCAAACTAAGTTTTCACTCTGCAAGCTAACAATCATAATAATAAATCTGACCATAATCATAACAAGGTTAAACCACTGCACGATAGGTCTTGTATTCTCGATCAACTGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGA]
[+] EMBL CD128250 [ TTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAA ]
[-] EMBL CD139462 [ ACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAAC ]
consensusID : consensus_10495#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[GAATTCGATTGCCAAAAATCTNTCCCCCAANAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGTTGATGGAATCTGTATTTGATGACTAAGACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTCGCCCCCCCCCGTNGNNTNGTTTACTGGGTTTATGGNAATNTTTATGTTTTTTGTNNNAAACTTGTGCTTTGTNTATGCNTTCGCTGCNCTTTGTCTNCGTGTTGCTGAGGCT]
[+] EMBL CD135325 [GAATTCGATTGCCAAAAATCTNTCCCCCAANAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGTTGATGGAATCTGTATTTGATGACTAAGACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTCGCCCCCCCCCGTNGNNTNGTTTACTGGGTTTATGGNAATNTTTATGTTTTTTGTNNNAAACTTGTGCTTTGTNTATGCNTTCGCTGCNCTTTGTCTNCGTGTTGCTGAGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10495#0 GAGCCATATTCGGCCGAGGGGTTGAACCACTGCACGATAGGTCTTGTATTCTCGATCAAC 60
consensus_10495#2 ------------------------------------------------------------
consensus_10495#1 ------------------------------------------------------------
consensus_10495#0 TGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACT 120
consensus_10495#2 ------------------------------------------------------------
consensus_10495#1 ------------------------------------------------------------
consensus_10495#0 TGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGT 180
consensus_10495#2 ------------------------------------------------------------
consensus_10495#1 ------------------------------------------------------------
consensus_10495#0 ATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATC 240
consensus_10495#2 ------------------------------------------------------------
consensus_10495#1 ------------------------------------------------------------
consensus_10495#0 CAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAA 300
consensus_10495#2 ------------------------------------------------------------
consensus_10495#1 ------------------------------------------------------------
consensus_10495#0 ATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCC-AAGAA-ATCTATCGGTTTAT 358
consensus_10495#2 ------------GAATTCGATTGCCAAAAATCTNTCCCCCAANAA-ATCTATCGGTTTAT 47
consensus_10495#1 ---GGCTTCTTCAAACTAAGTTTTCACTCTGCAAGCTAACAATCATAATAATAAATCTGA 57
* ** * * ** * * ** * *
consensus_10495#0 ACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAA 418
consensus_10495#2 ACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAA 107
consensus_10495#1 CCATAATCATAACAAGGTTA--AACCACTGCACGATAGGTCTTGTATTCTCGATCAACTG 115
** ** * **** * ** * ** * ** ***** * ** *
consensus_10495#0 CTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTG 478
consensus_10495#2 CTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGTTGATGGAATCTGTATTTG 167
consensus_10495#1 CTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTG 175
** ** * * * ** * ** * * * * * * * ***
consensus_10495#0 ATGACAAAAACGACTTTCTGGATGTTGT-TTATTGGTTTAGGCAAGTTTTTGCCATTA-T 536
consensus_10495#2 ATGACTAAGACGACTTTCTGGATGTTGT-TTATTGGTTTAGGCAAGTTTTTGCCATTA-T 225
consensus_10495#1 -TGGATAAG-CTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGT 233
** ** * *** * * * * * * *** ** ** * *
consensus_10495#0 AGTTGGTGTTGTCTGGGGT-----GTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATG 591
consensus_10495#2 AGTTGGTGTCGCCCCCCCCC----GTNGNNTNGTTTACTGGGTTTATGGNAATNTTTATG 281
consensus_10495#1 ATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATC 293
* * * **** * * * **
consensus_10495#0 TTTTTTGTAACAAACATA------TGCTTTGTCTATGCATACGCTGCAATTTATCAACGT 645
consensus_10495#2 TTTTTTGTNNNAAACTTG------TGCTTTGTNTATGCNTTCGCTGCNCTTTGTCTNCGT 335
consensus_10495#1 CAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAA 353
* ** * * ** * * * * *
consensus_10495#0 GTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCG 705
consensus_10495#2 GTTGCTGAGGCT------------------------------------------------ 347
consensus_10495#1 ATACCCGAAATTGTACCGAAACAACAAGA------------------------------- 382
* ** *
consensus_10495#0 TTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGTAAACAGC 765
consensus_10495#2 ------------------------------------------------------------
consensus_10495#1 ------------------------------------------------------------
consensus_10495#0 ACAACTTGGTAGTTTATCAATGCTGTATTTGTAATATATGTTACTGTTTTTGTACATCCC 825
consensus_10495#2 ------------------------------------------------------------
consensus_10495#1 ------------------------------------------------------------
consensus_10495#0 GATATTCTTTTTTCTAAATATATCGCGTAGT 856
consensus_10495#2 -------------------------------
consensus_10495#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||