These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 856 fasta sequence [GAGCCATATTCGGCCGAGGGGTTGAACCACTGCACGATAGGTCTTGTATTCTCGATCAACTGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA-TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGTAAACAGCACAACTTGGTAGTTTATCAATGCTGTATTTGTAATATATGTTACTGTTTTTGTACATCCCGATATTCTTTTTTCT-AAATATATCGCGTAGT] [+] EMBL CD081746 [GAGCCATATTCGGCCGAGGGGTTGAACCACTGCACGATAGGTCTTGTATTCTCGATCAACTGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGTAAACAGCACAACTTGGTAGTTTATCAATGCTGTATTNGTAATATATGTTACTGTTTTTGTACATCCCGATATTCTTTNTTCT AAATATATCGCGTAGT] [+] EMBL CD137088 [ ACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAAAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAA ] [-] EMBL CD136697 [ GAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAATCCGCTTTTGCAGACCGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCTTTG AACAAACGCACTTACTCAANTACAAGATACAGAAATCCAANCCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGG ] [+] EMBL CD082658 [ GGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGT AACAGCACAACTTGGTAGTTTATCAATGCTGTATTTGT ATATATNGTACTGTTTTTGTACATCCNGATATTC TNTTTCT AAATATATCG ] [-] EMBL CD139394 [ CTACTGGATAAACGCAAAATCGCTTATGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCGTGTCACAAACGCACTTACTCAAATACAAGATACAGAAATCCAAACCGACAGGAACTTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTAT ] [+] EMBL CD139314 [ TACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTA ] [+] EMBL CD139294 [ TACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTA ] [-] EMBL CD139239 [ ACTTGATANACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAGATTGTACCGAAACAACAAGAGGCAAGCCCCAAGAAATCTAT ] [+] EMBL CD139345 [ ACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCA CCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTA ] [+] EMBL CD137380 [ CGCTTATGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAA TTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGA ] [-] EMBL CD076254 [ GGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCCAAGAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGTAAACAGCACAACTTGGTAGTTTATCAATGCTGTATTTGTAATATATGTTACTGTTTTTGTACATCCCGATATTCTTTTTTCTAAAATATATCGC ] [-] EMBL BG932852 [ TTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTGATGACAAAAACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTTGTCTGGGGTGTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTCTATGCATACGCTGCAATTTATCAACGTGTTGATGAGGATGAATATGGTG ] [-] EMBL CD075480 [ GTAATTATGAAATATTTCTCAAGGCGCTGAAAATGGAATCTGTATTTGATGCCAAAAACGCCTTTCTGGATGTTGTTTATTGGTTTAGCCAAGTTTTTCCCATTATAGTTGGTGTTGTCTGGGGTGAACCCTCGTTTCCAGGCTTTATGCCAATCCTCATGTTTTTTGTAACAAACATATGCTTTGTTTATGCATACGCTCCAATTTATCAACGTGTTAATGAGAATGAATATGGTGGATATGGGGAGATCATAAAAAAAGGATTAATGCCAGCGTTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCCCGGTGTAACCAGCCCAACTTGGTAGTTTATCAATGCTGTATTTGTAAAATATGTTACTGTTTTTGTACATCCCGATATTCTTTTTTTTAAAATATATgg ] consensusID : consensus_10495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 382 fasta sequence [GGCTTCTTCAAACTAAGTTTTCACTCTGCAAGCTAACAATCATAATAATAAATCTGACCATAATCATAACAAGGTTAAACCACTGCACGATAGGTCTTGTATTCTCGATCAACTGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGA] [+] EMBL CD190610 [GGCTTCTTCAAACTAAGTTTTCACTCTGCAAGCTAACAATCATAATAATAAATCTGACCATAATCATAACAAGGTTAAACCACTGCACGATAGGTCTTGTATTCTCGATCAACTGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAACAACAAGA] [+] EMBL CD128250 [ TTCTTGCGAACACGGGACTTGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAA ] [-] EMBL CD139462 [ ACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGTATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATCCAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAAATACCCGAAATTGTACCGAAAC ] consensusID : consensus_10495#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [GAATTCGATTGCCAAAAATCTNTCCCCCAANAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGTTGATGGAATCTGTATTTGATGACTAAGACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTCGCCCCCCCCCGTNGNNTNGTTTACTGGGTTTATGGNAATNTTTATGTTTTTTGTNNNAAACTTGTGCTTTGTNTATGCNTTCGCTGCNCTTTGTCTNCGTGTTGCTGAGGCT] [+] EMBL CD135325 [GAATTCGATTGCCAAAAATCTNTCCCCCAANAAATCTATCGGTTTATACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAACTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGTTGATGGAATCTGTATTTGATGACTAAGACGACTTTCTGGATGTTGTTTATTGGTTTAGGCAAGTTTTTGCCATTATAGTTGGTGTCGCCCCCCCCCGTNGNNTNGTTTACTGGGTTTATGGNAATNTTTATGTTTTTTGTNNNAAACTTGTGCTTTGTNTATGCNTTCGCTGCNCTTTGTCTNCGTGTTGCTGAGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10495#0 GAGCCATATTCGGCCGAGGGGTTGAACCACTGCACGATAGGTCTTGTATTCTCGATCAAC 60 consensus_10495#2 ------------------------------------------------------------ consensus_10495#1 ------------------------------------------------------------ consensus_10495#0 TGCTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACT 120 consensus_10495#2 ------------------------------------------------------------ consensus_10495#1 ------------------------------------------------------------ consensus_10495#0 TGTGGATAAGCTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGT 180 consensus_10495#2 ------------------------------------------------------------ consensus_10495#1 ------------------------------------------------------------ consensus_10495#0 ATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATC 240 consensus_10495#2 ------------------------------------------------------------ consensus_10495#1 ------------------------------------------------------------ consensus_10495#0 CAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAA 300 consensus_10495#2 ------------------------------------------------------------ consensus_10495#1 ------------------------------------------------------------ consensus_10495#0 ATACCCGAAATTGTACCGAAACAACAAGAAGCAAGCCCC-AAGAA-ATCTATCGGTTTAT 358 consensus_10495#2 ------------GAATTCGATTGCCAAAAATCTNTCCCCCAANAA-ATCTATCGGTTTAT 47 consensus_10495#1 ---GGCTTCTTCAAACTAAGTTTTCACTCTGCAAGCTAACAATCATAATAATAAATCTGA 57 * ** * * ** * * ** * * consensus_10495#0 ACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAA 418 consensus_10495#2 ACAAGCTCGTGACAAAGATATTGGATATTGGAAGAATGGTCTCAAAGGTGAATTCGAAAA 107 consensus_10495#1 CCATAATCATAACAAGGTTA--AACCACTGCACGATAGGTCTTGTATTCTCGATCAACTG 115 ** ** * **** * ** * ** * ** ***** * ** * consensus_10495#0 CTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGAAGATGGAATCTGTATTTG 478 consensus_10495#2 CTCAATTTGTGAGTAATTATGAAATATTTCTCAAGGCGCTGTTGATGGAATCTGTATTTG 167 consensus_10495#1 CTGTCTTCATAATTGCTTCAACTGAAATTTACGTTCTTTTTCTTGCGAACACGGGACTTG 175 ** ** * * * ** * ** * * * * * * * *** consensus_10495#0 ATGACAAAAACGACTTTCTGGATGTTGT-TTATTGGTTTAGGCAAGTTTTTGCCATTA-T 536 consensus_10495#2 ATGACTAAGACGACTTTCTGGATGTTGT-TTATTGGTTTAGGCAAGTTTTTGCCATTA-T 225 consensus_10495#1 -TGGATAAG-CTACTGGATTAACGCAAAATCGCTTTTGCAGGACGGTCAAAGCTGCTGGT 233 ** ** * *** * * * * * * *** ** ** * * consensus_10495#0 AGTTGGTGTTGTCTGGGGT-----GTAGCCTCGTTTACAGGCTTTATGGCAATCCTCATG 591 consensus_10495#2 AGTTGGTGTCGCCCCCCCCC----GTNGNNTNGTTTACTGGGTTTATGGNAATNTTTATG 281 consensus_10495#1 ATCCAGAATCCCTACTGCCTTGAAACAAACGCACTTACTCAACTACAAGATACAGAAATC 293 * * * **** * * * ** consensus_10495#0 TTTTTTGTAACAAACATA------TGCTTTGTCTATGCATACGCTGCAATTTATCAACGT 645 consensus_10495#2 TTTTTTGTNNNAAACTTG------TGCTTTGTNTATGCNTTCGCTGCNCTTTGTCTNCGT 335 consensus_10495#1 CAAACCGACAGGAATTAGGGGAGTCGAGTCGTTAGACTATCACCCACTGGACATAACCAA 353 * ** * * ** * * * * * consensus_10495#0 GTTGATGAGGATGAATATGGTGGATATGGGGAGATCATAAAAGAAGGATTAATGACAGCG 705 consensus_10495#2 GTTGCTGAGGCT------------------------------------------------ 347 consensus_10495#1 ATACCCGAAATTGTACCGAAACAACAAGA------------------------------- 382 * ** * consensus_10495#0 TTTGCATGCTTTATGGTATCCTGGATACTCACTTATGATTGTGCTCACGGTGTAAACAGC 765 consensus_10495#2 ------------------------------------------------------------ consensus_10495#1 ------------------------------------------------------------ consensus_10495#0 ACAACTTGGTAGTTTATCAATGCTGTATTTGTAATATATGTTACTGTTTTTGTACATCCC 825 consensus_10495#2 ------------------------------------------------------------ consensus_10495#1 ------------------------------------------------------------ consensus_10495#0 GATATTCTTTTTTCTAAATATATCGCGTAGT 856 consensus_10495#2 ------------------------------- consensus_10495#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||