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Schistosoma mansoni
cluster # 10501 cluster # 10501       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10501#0 length = 592 sequences # 15  
consensus_10501#1 length = 382 sequences # 1  
consensus_10501#2 length = 230 sequences # 1  

consensusID : consensus_10501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 592
fasta sequence
                              [TATTGTGATGGACGGGGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG-AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA]

[-] EMBL BG930796             [TATTGTGATGGACGGGGGTTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg                                                                                                                                                                                                                ]
[+] EMBL CD083737             [               aGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTTTTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTG                                   ]
[-] EMBL BG931052             [                GGATCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTT CCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTCTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC                                                                                                                                                                                                                ]
[+] EMBL BG930408             [                 GGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGA                                                                                                                                                                                                                 ]
[+] EMBL BG930833             [                  GTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAGCATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGA                                                                                                                                                                                                                 ]
[+] EMBL BG930498             [                  tTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCCCCAtctat                                                                                                                                                                                                     ]
[-] EMBL BG930826             [                   TCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC                                                                                                                                                                                                                ]
[-] EMBL BG930391             [                   TCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGATCCCCCGTCGGCATT                                                                                                                                                                                                  ]
[-] EMBL BG931094             [                                        TCCGATATTGGTAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC                                                                                                                                                                                                                ]
[-] EMBL BG930993             [                                                                                                         TTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATCACGGGG ATAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAACCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGATTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg                                                                                                                                                                                                                ]
[-] EMBL BG930736             [                                                                                                                       GCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGA AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAAAAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg                                                                                                                                                                                                                ]
[-] EMBL BG930148             [                                                                                                                              CTTGAAGGTATTTCCCCCCAGCATGCTAGTATAACGGGA AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC                                                                                                                                                                                                                ]
[-] EMBL BG931279             [                                                                                                                                                                         AAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACGAAGTTTAACATGGTCATTCCCAGATATTGTAAAGGTCCGCTCGCACAAGCTCTGTTCGCATCGTTTCCTGATGAAGTATTTTTATCAGACAGCAACATACGGGGTTCATACACAAGATTATTTGGTCAACGCTGGAGACATCGTGCTTATTGAAAAAGCTGAC                                                                                                                                                                                                                ]
[-] EMBL CD170602             [                                                                                                                                                                                                      TGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACCTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA]
[-] EMBL CD170498             [                                                                                                                                                                                                      TGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA]


>consensus_10501#0 TATTGTGATGGACGGGGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGT GGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAG CCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTG CCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTC CCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTAT TTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGAC ATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAG AAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGT CCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCA AATTCATTTCTACTTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA



consensusID : consensus_10501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence
                              [GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACTGAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGNCACATACTGGGTTCATACACAA]

[+] EMBL CD077433             [GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACTGAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGNCACATACTGGGTTCATACACAA]


>consensus_10501#1 GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACT GAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATT CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGG TATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGC AATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAA GGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGN CACATACTGGGTTCATACACAA



consensusID : consensus_10501#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence
                              [GTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGGTATTTCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGCAATTGGGAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCAGATATTGTAAAGGTCGCTTCTGACAACGACTGTTTGATGTTCTGAGAGT]

[+] EMBL AA566160             [GTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGGTATTTCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGCAATTGGGAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCAGATATTGTAAAGGTCGCTTCTGACAACGACTGTTTGATGTTCTGAGAGT]


>consensus_10501#2 GTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACA ACGCTGAGCTTGGAGGTATTTCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTG CCAAACGATTATGCAATTGGGAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCC AGATATTGTAAAGGTCGCTTCTGACAACGACTGTTTGATGTTCTGAGAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10501#1      GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACT 60
consensus_10501#2      ------------------------------------------------------------
consensus_10501#0      ----------------------------------------------TATTGTGATGGACG 14
                                                                                   

consensus_10501#1      GAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATT 120
consensus_10501#2      --------------------------------------------GTGGCTTAAAAATATT 16
consensus_10501#0      GGGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATT 74
                                                                   ****************

consensus_10501#1      CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGG 180
consensus_10501#2      CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGG 76
consensus_10501#0      CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGG 134
                       *********************************************  *************

consensus_10501#1      TATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGC 240
consensus_10501#2      TATTTCCCC--AGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGC 134
consensus_10501#0      TATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGC 194
                       *********  *************************************   *********

consensus_10501#1      AATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAA 300
consensus_10501#2      AATTGGG-AAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCC-AGATATTGTAAA 192
consensus_10501#0      AATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAA 254
                       ******* *************************************** ************

consensus_10501#1      GGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGN 360
consensus_10501#2      GGTCGCTTCTGACAACGACTGTTTGA----TGTTCTGA--GAGT---------------- 230
consensus_10501#0      GGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGC 314
                       ****   *   ****   ********    * * ****   ***                

consensus_10501#1      CACATACTGGGTTCATACACAA-------------------------------------- 382
consensus_10501#2      ------------------------------------------------------------
consensus_10501#0      AACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGA 374
                                                                                   

consensus_10501#1      ------------------------------------------------------------
consensus_10501#2      ------------------------------------------------------------
consensus_10501#0      AAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCC 434
                                                                                   

consensus_10501#1      ------------------------------------------------------------
consensus_10501#2      ------------------------------------------------------------
consensus_10501#0      TCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAAT 494
                                                                                   

consensus_10501#1      ------------------------------------------------------------
consensus_10501#2      ------------------------------------------------------------
consensus_10501#0      TGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACT 554
                                                                                   

consensus_10501#1      --------------------------------------
consensus_10501#2      --------------------------------------
consensus_10501#0      TTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA 592
                                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)