These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1326 fasta sequence [TGTAGGTCGCAGTCAACATGATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCAGGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGT-ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG-TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA-TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG-AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTAGCCAGGTATTAGAGTCAGAGGGTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCAAATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGCTGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAACTAATACAGTGTTATTACCATCTCATAGTGGTGATGTTGCGTCGATGGTTACTCAAGCATTGACTATATTTAAAAGTTTAGATCAACCGAAAACCGACATCGGTAATGATAATAATGACGGTGGATGTAATGATGAATCTCATTCAGAAGTAGTGGCTGACCATCAGTTAAATCCCAATATTATTAATAATAATGATAGCGATAAACAAGAATAGAAACCATTACATATCCTAACAAATCCAGATTATTGTCAAAAACCAATTCAAAGCTATATACAGAAAATAATGAATTTAATGGTTTTTCAAAACAATTTTGAAAAGAACGTACAAAAAATACGAAAGAATATAGGCATAGTATGTCCTAGTTTTCTGCTTTTCCACTATGTATATTATTGCTCATTGTTTTCTCCAGTATGATCAGACAACTTTGATGTGAATAAAATATATA] [+] EMBL BF936652 [TGTAGGTCGCAGTCAACATGATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCAGGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCATTCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGACTTGAGGGGTTTAAACGTAGCCAG ] [+] EMBL BF936634 [TGTAGGTCGCAGTCAACATGATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCAGGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATGTTCAAATCGTACAAGCTTTAa ] [+] EMBL CD199398 [ ATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCAGGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATGTTTGTATGCCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCGTTTTTAC ATTGAACGGTGTTCTC ] [+] EMBL CD199422 [ ATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCGGGGTATATGCTAGCAGTCGTGACTACACATCACAGGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGATATTCCAG ] [-] EMBL CD199412 [ GGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAA TTAGGGGTNATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTAGTATACCCATTCTAGATCGCGTCGCTTATGCACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTC ] [-] EMBL CD199366 [ ACTACACATCACAAGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTGGGTTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGGACCAGGACACAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTC ] [+] EMBL CD146384 [ TTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAA ] [+] EMBL CD146317 [ TTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAA ] [+] EMBL CD201536 [ TGGGTTATTGAAAGGTTACGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGAACGCGTCGCTTATGTACAGTCGTTGAAAGAAGTGGCCATTGAAATTCCAGATCACTCTGCCATTACCTCACATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTT ] [+] EMBL CD185441 [ TTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCC ] [+] EMBL CD163785 [ GGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTAGCC ] [+] EMBL CD078318 [ CCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGGAAAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAGATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTAGCCAGGTATTAGAGTCAGAGGGTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCAAATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGCTGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAAC ] [-] EMBL CD133601 [ CAGTTAGCTCAAACAATTATGCGATCAGAGATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTT ] [+] EMBL CD078240 [ a AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGGGCCACAAAAAATCAAAGAAGCTATGCAGATGCGAGTCTAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCAGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTATCCAGGTATTAAAGTCAGAGGGTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTA ] [+] EMBL CD140680 [ ATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTAGCCAGGTATTAGAGTCAGAGGGTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCAAATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGCTGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAACTAATACAGTG ] [-] EMBL CD074766 [ GTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCAAATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGCTGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAACTAATACAGTGTTATTACCATCTCATAGTGGTGATGTTGCGTCGATGGTTACTCAAGCATTGACTATATTTAAAAGTTTAGATCAACCGAAAACCGACATCGGTAATGATAATAATGACGGTGGATGTAATGATGAATCTCATTCAGAAGTAGTGGCTGACCATCAGTTAAATCCCAATATTATTAATAATAATGATAGCGATAAACAAGAATAGAAACCATTACATATCCTAACAAATCCAGATTATTGTCAAAAACCAATTCAAAGCTATATACAGAAAATAATGAATTTAATGGTTTTTCAAAACAATTTTGAAAAGAACGTACAAAAAATACGAAAGAATATAGGCATAGTATGTCCTAGTTTTCTGCTTTTCCACTATGTATATTATTGCTCATTGTTTTCTCCAGTATGATCAGACAACTTTGATGTGAATAAAATATATA] consensusID : consensus_10508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [TTTTTTTTTTTTTTTTTTTTACACAGTAAAAATATATTATACAAAACTAAAGAATTAAAGTGGAAACACTTCTTTTACATGGGTCAAAAACTTCTCATGGTCAGATATAGGTTCAGAAGTTCTAAAATCATAGTACATACGGTACAGGAACACTTCCAAATGGCTTCATAGTAGTCGACCACTGAAACCATGATACGGTCTCAAAATTCTTTTAGCCTCGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTACGGGTTAGGGTTAGAGTTAAGGTTTAGGTGTAGGGTTTAGGGTTATGNTGAAGACTATACGT] [+] EMBL AI395445 [TTTTTTTTTTTTTTTTTTTTACACAGTAAAAATATATTATACAAAACTAAAGAATTAAAGTGGAAACACTTCTTTTACATGGGTCAAAAACTTCTCATGGTCAGATATAGGTTCAGAAGTTCTAAAATCATAGTACATACGGTACAGGAACACTTCCAAATGGCTTCATAGTAGTCGACCACTGAAACCATGATACGGTCTCAAAATTCTTTTAGCCTCGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTACGGGTTAGGGTTAGAGTTAAGGTTTAGGTGTAGGGTTTAGGGTTATGNTGAAGACTATACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10508#0 TGTAGGTCGCAGTCAACATGATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCA 60 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 GGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGTATTGA 120 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 TCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGG 180 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 AACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGA 240 consensus_10508#1 -------------TTTTTTTTTTTTTTTTTT---TTACACAGTAAAAATATATTATACAA 44 ***** * * ** * * * * * ** * * * consensus_10508#0 AAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCGTTTTAC 300 consensus_10508#1 AACTAAAGA--ATTAAAGT----GGAAACACTTCTTTTACATGGGTCAAAAACTTCTCAT 98 ** * * *** ** * * * ** * **** * * ** * * * * consensus_10508#0 AATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCATCATATGGGG-TG 359 consensus_10508#1 GGTCAGATATAGGTT-----CAGAAGTTCTAAAATCATAGTACA-TACGGTACAGGAACA 152 * * * * * ** ** ****** * * * * ** ** consensus_10508#0 TCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG 419 consensus_10508#1 CTTCCAAATGGCTTCATAGT-AGTCGACCA-CTGAAACCATGATACGGTCTCAAA----- 205 ** ** * * * ** * ** **** ** ** ** ** *** consensus_10508#0 AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAA-ATTTTCAAATCGTACA 478 consensus_10508#1 ---ATTCTTTTAGCCT-CGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTA 261 ** ** * * * * * ** * * *** ** ** ** ** * consensus_10508#0 AGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGA 538 consensus_10508#1 CGGGTTAGGGTTAGAGTTAAGG--TTTAGGTGTAGGGT-TTAGGGTTATGNTGAAGACTA 318 * ***** ** * * ** *** * * ** ** * ****** * * consensus_10508#0 TGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAA 598 consensus_10508#1 TACGT------------------------------------------------------- 323 * consensus_10508#0 AAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGA 658 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 GGGTTTAAAACGTAGCCAGGTATTAGAGTCAGAGGGTCACCAGATTGAAATTGTAAATAA 718 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 AGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCA 778 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 AATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGC 838 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 TGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAACTAATACAGTGTTATTACC 898 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 ATCTCATAGTGGTGATGTTGCGTCGATGGTTACTCAAGCATTGACTATATTTAAAAGTTT 958 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 AGATCAACCGAAAACCGACATCGGTAATGATAATAATGACGGTGGATGTAATGATGAATC 1018 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 TCATTCAGAAGTAGTGGCTGACCATCAGTTAAATCCCAATATTATTAATAATAATGATAG 1078 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 CGATAAACAAGAATAGAAACCATTACATATCCTAACAAATCCAGATTATTGTCAAAAACC 1138 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 AATTCAAAGCTATATACAGAAAATAATGAATTTAATGGTTTTTCAAAACAATTTTGAAAA 1198 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 GAACGTACAAAAAATACGAAAGAATATAGGCATAGTATGTCCTAGTTTTCTGCTTTTCCA 1258 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 CTATGTATATTATTGCTCATTGTTTTCTCCAGTATGATCAGACAACTTTGATGTGAATAA 1318 consensus_10508#1 ------------------------------------------------------------ consensus_10508#0 AATATATA 1326 consensus_10508#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||