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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1326 fasta sequence
[TGTAGGTCGCAGTCAACATGATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCAGGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGT-ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG-TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA-TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG-AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTAGCCAGGTATTAGAGTCAGAGGGTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCAAATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGCTGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAACTAATACAGTGTTATTACCATCTCATAGTGGTGATGTTGCGTCGATGGTTACTCAAGCATTGACTATATTTAAAAGTTTAGATCAACCGAAAACCGACATCGGTAATGATAATAATGACGGTGGATGTAATGATGAATCTCATTCAGAAGTAGTGGCTGACCATCAGTTAAATCCCAATATTATTAATAATAATGATAGCGATAAACAAGAATAGAAACCATTACATATCCTAACAAATCCAGATTATTGTCAAAAACCAATTCAAAGCTATATACAGAAAATAATGAATTTAATGGTTTTTCAAAACAATTTTGAAAAGAACGTACAAAAAATACGAAAGAATATAGGCATAGTATGTCCTAGTTTTCTGCTTTTCCACTATGTATATTATTGCTCATTGTTTTCTCCAGTATGATCAGACAACTTTGATGTGAATAAAATATATA]
[+] EMBL BF936652 [TGTAGGTCGCAGTCAACATGATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCAGGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCATTCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGACTTGAGGGGTTTAAACGTAGCCAG ]
[+] EMBL BF936634 [TGTAGGTCGCAGTCAACATGATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCAGGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATGTTCAAATCGTACAAGCTTTAa ]
[+] EMBL CD199398 [ ATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCAGGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATGTTTGTATGCCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCGTTTTTAC ATTGAACGGTGTTCTC ]
[+] EMBL CD199422 [ ATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCGGGGTATATGCTAGCAGTCGTGACTACACATCACAGGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGATATTCCAG ]
[-] EMBL CD199412 [ GGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAA TTAGGGGTNATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTAGTATACCCATTCTAGATCGCGTCGCTTATGCACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTC ]
[-] EMBL CD199366 [ ACTACACATCACAAGCACCCATAAATTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTGGGTTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGGACCAGGACACAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTC ]
[+] EMBL CD146384 [ TTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAA ]
[+] EMBL CD146317 [ TTTAGGGGT ATTGATCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGAA ]
[+] EMBL CD201536 [ TGGGTTATTGAAAGGTTACGAAAATTTCACAGGACGCTGGAACCAGGACTCAATTTTTGTATACCCATTCTAGAACGCGTCGCTTATGTACAGTCGTTGAAAGAAGTGGCCATTGAAATTCCAGATCACTCTGCCATTACCTCACATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTT ]
[+] EMBL CD185441 [ TTCTAGATCGCGTCGCTTATGTACAGTCATTGAAAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCG TTTTACAATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCA TCATATGGGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCC ]
[+] EMBL CD163785 [ GGGTGTCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTAGCC ]
[+] EMBL CD078318 [ CCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGGAAAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAGATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTAGCCAGGTATTAGAGTCAGAGGGTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCAAATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGCTGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAAC ]
[-] EMBL CD133601 [ CAGTTAGCTCAAACAATTATGCGATCAGAGATCGGG AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTT ]
[+] EMBL CD078240 [ a AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAAATTTTCAAATCGTACAAGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGATGTCCAGGGGCCACAAAAAATCAAAGAAGCTATGCAGATGCGAGTCTAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCAGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTATCCAGGTATTAAAGTCAGAGGGTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTA ]
[+] EMBL CD140680 [ ATGCAAGTCGAAGCAGAACGAAAAAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGAGGGTTTAAAACGTAGCCAGGTATTAGAGTCAGAGGGTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCAAATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGCTGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAACTAATACAGTG ]
[-] EMBL CD074766 [ GTCACCAGATTGAAATTGTAAATAAAGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCAAATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGCTGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAACTAATACAGTGTTATTACCATCTCATAGTGGTGATGTTGCGTCGATGGTTACTCAAGCATTGACTATATTTAAAAGTTTAGATCAACCGAAAACCGACATCGGTAATGATAATAATGACGGTGGATGTAATGATGAATCTCATTCAGAAGTAGTGGCTGACCATCAGTTAAATCCCAATATTATTAATAATAATGATAGCGATAAACAAGAATAGAAACCATTACATATCCTAACAAATCCAGATTATTGTCAAAAACCAATTCAAAGCTATATACAGAAAATAATGAATTTAATGGTTTTTCAAAACAATTTTGAAAAGAACGTACAAAAAATACGAAAGAATATAGGCATAGTATGTCCTAGTTTTCTGCTTTTCCACTATGTATATTATTGCTCATTGTTTTCTCCAGTATGATCAGACAACTTTGATGTGAATAAAATATATA]
consensusID : consensus_10508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[TTTTTTTTTTTTTTTTTTTTACACAGTAAAAATATATTATACAAAACTAAAGAATTAAAGTGGAAACACTTCTTTTACATGGGTCAAAAACTTCTCATGGTCAGATATAGGTTCAGAAGTTCTAAAATCATAGTACATACGGTACAGGAACACTTCCAAATGGCTTCATAGTAGTCGACCACTGAAACCATGATACGGTCTCAAAATTCTTTTAGCCTCGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTACGGGTTAGGGTTAGAGTTAAGGTTTAGGTGTAGGGTTTAGGGTTATGNTGAAGACTATACGT]
[+] EMBL AI395445 [TTTTTTTTTTTTTTTTTTTTACACAGTAAAAATATATTATACAAAACTAAAGAATTAAAGTGGAAACACTTCTTTTACATGGGTCAAAAACTTCTCATGGTCAGATATAGGTTCAGAAGTTCTAAAATCATAGTACATACGGTACAGGAACACTTCCAAATGGCTTCATAGTAGTCGACCACTGAAACCATGATACGGTCTCAAAATTCTTTTAGCCTCGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTACGGGTTAGGGTTAGAGTTAAGGTTTAGGTGTAGGGTTTAGGGTTATGNTGAAGACTATACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10508#0 TGTAGGTCGCAGTCAACATGATTCGTAGTATCATTGGTCGTTCAAGTTGTCGACTTTCCA 60
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 GGGTATATGCTAGCAGTCGTGACTACACATCACAAGCACCCATAAATTTAGGGGTATTGA 120
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 TCGTTCCAGAGAAAGAAGCTTGGGTTATTGAAAGGTTAGGAAAATTTCACAGGACGCTGG 180
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 AACCAGGACTCAATTTTTGTATACCCATTCTAGATCGCGTCGCTTATGTACAGTCATTGA 240
consensus_10508#1 -------------TTTTTTTTTTTTTTTTTT---TTACACAGTAAAAATATATTATACAA 44
***** * * ** * * * * * ** * * *
consensus_10508#0 AAGAAGTGGCCATTGAAATTCCAGATCAGTCTGCCATTACCTCAGATAATGTCGTTTTAC 300
consensus_10508#1 AACTAAAGA--ATTAAAGT----GGAAACACTTCTTTTACATGGGTCAAAAACTTCTCAT 98
** * * *** ** * * * ** * **** * * ** * * * *
consensus_10508#0 AATTGAACGGTGTTCTCTTCCTTAAAGTCAAAAATCCTTATTTAGCATCATATGGGG-TG 359
consensus_10508#1 GGTCAGATATAGGTT-----CAGAAGTTCTAAAATCATAGTACA-TACGGTACAGGAACA 152
* * * * * ** ** ****** * * * * ** **
consensus_10508#0 TCCGAGGCTGAATTTGCAATTACTCAGTTAGCTCAAACAATTATGCGATCAGAAATCGGG 419
consensus_10508#1 CTTCCAAATGGCTTCATAGT-AGTCGACCA-CTGAAACCATGATACGGTCTCAAA----- 205
** ** * * * ** * ** **** ** ** ** ** ***
consensus_10508#0 AAGATAATTCTGGACAATGTTTTTAAAGAACGAGAAGCATTAA-ATTTTCAAATCGTACA 478
consensus_10508#1 ---ATTCTTTTAGCCT-CGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTA 261
** ** * * * * * ** * * *** ** ** ** ** *
consensus_10508#0 AGCTTTAGGCAAAGCATCAGAACCTTGGGGTATTGAGTGTTTGCGTTATGAAATTCGCGA 538
consensus_10508#1 CGGGTTAGGGTTAGAGTTAAGG--TTTAGGTGTAGGGT-TTAGGGTTATGNTGAAGACTA 318
* ***** ** * * ** *** * * ** ** * ****** * *
consensus_10508#0 TGTCCAGGTGCCACAAAAAATCAAAGAAGCTATGCAAATGCAAGTCGAAGCAGAACGAAA 598
consensus_10508#1 TACGT------------------------------------------------------- 323
*
consensus_10508#0 AAAACGTGCATCCATTTTAGAGTCGGAAGGACAACGTGAGGCTGCTATTAATCGAGCTGA 658
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 GGGTTTAAAACGTAGCCAGGTATTAGAGTCAGAGGGTCACCAGATTGAAATTGTAAATAA 718
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 AGCTTCAGGTGAAGCTGAAGCTATCCAACGTCTAGCAGAAGCTCGAGCTCAGTCTATTCA 778
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 AATCATTGCCCGTGCGATCGGTAGTAAGCGTGGAGCAGATGCAGTACAGCTTACAGTAGC 838
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 TGAACAGTACATAGAAGCTTTCAGTGCTTTAGCGAAGACAACTAATACAGTGTTATTACC 898
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 ATCTCATAGTGGTGATGTTGCGTCGATGGTTACTCAAGCATTGACTATATTTAAAAGTTT 958
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 AGATCAACCGAAAACCGACATCGGTAATGATAATAATGACGGTGGATGTAATGATGAATC 1018
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 TCATTCAGAAGTAGTGGCTGACCATCAGTTAAATCCCAATATTATTAATAATAATGATAG 1078
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 CGATAAACAAGAATAGAAACCATTACATATCCTAACAAATCCAGATTATTGTCAAAAACC 1138
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 AATTCAAAGCTATATACAGAAAATAATGAATTTAATGGTTTTTCAAAACAATTTTGAAAA 1198
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 GAACGTACAAAAAATACGAAAGAATATAGGCATAGTATGTCCTAGTTTTCTGCTTTTCCA 1258
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 CTATGTATATTATTGCTCATTGTTTTCTCCAGTATGATCAGACAACTTTGATGTGAATAA 1318
consensus_10508#1 ------------------------------------------------------------
consensus_10508#0 AATATATA 1326
consensus_10508#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||