These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1031 fasta sequence [CACACACGCACACAACCCCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTCATCCACCCACCTTCCCACAAAATCTCACAATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTCATCACCTCAAAAAGTTCATCAACACGCGTCACACTCAACAAAACACATCTCGGAAATACATCCCACAATCACTCCCAAATACAACTAAACCACACCAATCCCACACACACACACAC] [-] EMBL CD097950 [CACACACGCACACAACCCCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTC ] [-] EMBL CD097908 [ ACACAACCGCCTCATTCTCGACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTC ] [+] EMBL CD189974 [ GAGACCAAAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTCATCCACCCACCTTCCCACAAAATCTCACAATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCANACTAAGAACACAATTCTCAATATTCAGAGATTACCACANACCGTAACACCACATCAAACCAGAACAATTCAACAAc ] [+] EMBL CD123213 [ CCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTCATCCACCCACCTTCCCACAAAATCTCACAATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAA ] [-] EMBL CD168637 [ CCACCTTCCCACAAAATCTCACAATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCA ] [+] EMBL CD072435 [ AATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGGTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATNCATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATC ] [+] EMBL CD072416 [ AATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACGACACACTATATCATC ] [-] EMBL CD064142 [ cgCATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAGTTCCCTCATCAtaa ] [+] EMBL CD096554 [ TATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTCATCACCTCAAAAAGTTCATCAACACGCGTCACACTCAACAAAACACATCTCGGAAATACATCCCACAATCACTCCCAAATACAACTAAACCACACCAATCCCACACACACACACA ] [-] EMBL CD096498 [ ATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTCATCACCTCAAAAAGTTCATCAACACGCGTCACACTCAACAAAACACATCTCAGAAATACATCCCACAATCACTCCCAAATACAACTAAACCACACCAATCCCACACACACACACAC] [-] EMBL CD068197 [ TCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTCATCACCTC AAAGTTCATCAAC ] consensusID : consensus_10522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 570 fasta sequence [GCCCGGTACCCTCCAACCATATTCAGAATCGTCAAAACCAATAATA-CTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTGNTGATGCTC] [+] EMBL CD066185 [GCCCGGTACCCTCC ACTCTATTCAGAATCGTCAAAACCAATAATA CTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTGCCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCT ] [+] EMBL CD066222 [ CGGTACCCTCCAACCATATTCAGAATCGTCAAAACCAATAATACCTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTGCCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTGNTGATGCTC] [-] EMBL CD118520 [ ccaCTCCAACCATATTCAGAATCGTCAAAACCAATAATA CTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTNTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGNTAAGTGAGAACCAGTACAACCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGagtgg ] [-] EMBL CD202837 [ CATATTCAGAATCGTCAAAACCAATAATA CTACTCCCTATCATACAAACACGAACAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCGACAACAACACCATACGATACACTGACAAACACGTAAACATCTA ] [-] EMBL CD201470 [ AATCGTCAAAACCAATAATA CTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCTTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTatca ] consensusID : consensus_10522#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [GAAGACGGTAGACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGA] [+] EMBL CD061532 [GAAGACGGTAGACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10522#1 GCCCGGTACCCTCCAACCATATTCAGAATCGTCAAAACCAATAATACTACTCCCTATCAT 60 consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 ------------------------------------------------------------ consensus_10522#1 ACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAA 120 consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 ---------------------------------------------CACACACGCACACAA 15 consensus_10522#1 CCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTA 180 consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 CCCCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTA 75 consensus_10522#1 ACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCA 240 consensus_10522#2 -------GAAGACGGTAGACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCA 53 consensus_10522#0 ACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCA 135 * * * ****************************************** consensus_10522#1 CACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACC 300 consensus_10522#2 CACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACC 113 consensus_10522#0 CACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACC 195 ************************************************************ consensus_10522#1 GAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAG 360 consensus_10522#2 GAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAG 173 consensus_10522#0 GAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAG 255 ************************************************************ consensus_10522#1 GACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACA 420 consensus_10522#2 GACGGA------------------------------------------------------ 179 consensus_10522#0 GACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACA 315 ****** consensus_10522#1 AACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATC 480 consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 AACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATC 375 consensus_10522#1 ACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCA 540 consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 ACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCA 435 consensus_10522#1 GTATATCGCTGCCCCGCCTTGNTGATGCTC------------------------------ 570 consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 GTATATCGCTGCCCCGCCTTATCAATTCGCTCATCCACCCACCTTCCCACAAAATCTCAC 495 consensus_10522#1 ------------------------------------------------------------ consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 AATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACA 555 consensus_10522#1 ------------------------------------------------------------ consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 TCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTC 615 consensus_10522#1 ------------------------------------------------------------ consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 ATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATT 675 consensus_10522#1 ------------------------------------------------------------ consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 ACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACA 735 consensus_10522#1 ------------------------------------------------------------ consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 TCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTT 795 consensus_10522#1 ------------------------------------------------------------ consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 ACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCC 855 consensus_10522#1 ------------------------------------------------------------ consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 AAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTC 915 consensus_10522#1 ------------------------------------------------------------ consensus_10522#2 ------------------------------------------------------------ consensus_10522#0 ATCACCTCAAAAAGTTCATCAACACGCGTCACACTCAACAAAACACATCTCGGAAATACA 975 consensus_10522#1 -------------------------------------------------------- consensus_10522#2 -------------------------------------------------------- consensus_10522#0 TCCCACAATCACTCCCAAATACAACTAAACCACACCAATCCCACACACACACACAC 1031 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||