These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1045 fasta sequence [CAGCTGCATGGCATG----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT-TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTCCATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAACAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTATCATGTTTGACATGATTATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAA-TATATGTTGGAGAAATTCCGGTGGCAGCAGTACT] [+] EMBL AI067943 [CAGCTGCATGGCATGTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGCAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTT ] [+] EMBL AI068170 [CAGCTGCATGGCATG TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCACAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAACATACTGACTGACGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTACTACTACACACGCACACAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACCTAGATATTACTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAG ] [+] EMBL AI067648 [CAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAAAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAG ] [+] EMBL AI067730 [CAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCT ] [+] EMBL AI068174 [CAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAGAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTC ] [+] EMBL AI067507 [CAGCTGCATGGCATGTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCCCATAATAAAATACTGACTGAGGATCATTTAACTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCACTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAA ] [+] EMBL AI067653 [CAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGT ] [+] EMBL AI066982 [ AATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGA ] [+] EMBL SMT14614 [ TAAATNATTGATCATATTGTAGGAAAAAACACAAAATTNGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGNTCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGAT ] [+] EMBL CD140721 [ atatGGGATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACA ] [+] EMBL CD140798 [ AGAAAAGATCAAATGAAACGTAGAT TTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTG ] [+] EMBL CD190683 [ GTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTAC ] [-] EMBL CD190766 [ TCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCG ] [-] EMBL CD140727 [ GAAAGGC AACTGTGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTCCATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAACAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTATCATGTTTGACATGATTATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAA TATATGTTGGAGAAATTCCGGTGGCAGCAGTACT] [-] EMBL CD140723 [ TCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTCCATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAACAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTATCATGTTTGACATGATTATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAA TATATGTTGGAGAAATTCCGGTGGCAGCAGTACT] [-] EMBL CD140783 [ AAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGGAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTCCATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAACAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTACCATGTTTGACATGATTATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAATTATATGTTGGAGAAATTCCGGTGGCAGCAGTACT] consensusID : consensus_10525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [TTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCTCAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCCAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACTTGAGCTTCACCAGAGATTCGGAAGAAGCTATTATTAATGCAGAAAATAAAGACAAAGAAATTAAATTCA] [-] EMBL CD124562 [TTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCTCAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCCAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACTTGAGCTTCACCAGAGATTCGGAAGAAGCTATTATTAATGCAGAAAATAAAGACAAAGAAATTAAATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10525#0 CAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_10525#1 ------------------------------------------------------------ consensus_10525#0 TAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAA 120 consensus_10525#1 ------------------------------------------------------------ consensus_10525#0 TTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCAT 180 consensus_10525#1 ------------------------------------------------------------ consensus_10525#0 AATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAG 240 consensus_10525#1 ------------------------TTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAG 36 ************************************ consensus_10525#0 TAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGA 300 consensus_10525#1 TAGTACACACGCTCAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGA 96 ************ *********************************************** consensus_10525#0 AACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGA 360 consensus_10525#1 AACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGA 156 ************************************************************ consensus_10525#0 TTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTT 420 consensus_10525#1 TTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTT 216 ************************************************************ consensus_10525#0 TGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTC 480 consensus_10525#1 TGTGCATTACTACATTCCAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTC 276 ***************** ****************************************** consensus_10525#0 GTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGAC 540 consensus_10525#1 GTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGAC 336 ************************************************************ consensus_10525#0 TTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACTTGAGCT 600 consensus_10525#1 TTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACTTGAGCT 396 ************************************************************ consensus_10525#0 TCACCAGAGATTCGGAAGAAGCAA--GCTAAGATTTGTGATAATTCTACAAAATCTATAT 658 consensus_10525#1 TCACCAGAGATTCGGAAGAAGCTATTATTAATGCAGAAAATAAAGACAAAGAAATTAAAT 456 ********************** * *** **** * * ** ** ** consensus_10525#0 CAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAG 718 consensus_10525#1 TCA--------------------------------------------------------- 459 consensus_10525#0 CCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACT 778 consensus_10525#1 ------------------------------------------------------------ consensus_10525#0 TCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTC 838 consensus_10525#1 ------------------------------------------------------------ consensus_10525#0 CATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAA 898 consensus_10525#1 ------------------------------------------------------------ consensus_10525#0 CAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTATCATGTTTGACATGAT 958 consensus_10525#1 ------------------------------------------------------------ consensus_10525#0 TATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAATATATGT 1018 consensus_10525#1 ------------------------------------------------------------ consensus_10525#0 TGGAGAAATTCCGGTGGCAGCAGTACT 1045 consensus_10525#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||