Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10544 cluster # 10544       Sequences # 17       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10544#0 length = 1402 sequences # 13  
consensus_10544#1 length = 793 sequences # 4  

consensusID : consensus_10544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1402
fasta sequence
                              [ACTACTACTACTACTTTAAACAGG-AGATGAGATACAA-TATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATTCCTTCCTCCTCAACACATAACCACGAAATTCATATTTCAATATTATAATAACGATGTTGATCAAATTGTTATTTATCGTCATCGAGGTACAGGTTCAATAGAGATATTCAATGATAAGAAAGTTGGAACAATTTCAAATTATATCAGATTTTTCTCAAAATTTAAACTTAAAGTATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATTAAGAGATCTATTGTGAATTCAACTGAAGAAAGTATTTGAGATAACACAGTAAATATCCATTGAAATCTGATCACTTTATGAGTAGGCATATTGAGTGTTACATTTAACAATAACTTGCTCAGTATTTACCTTTCAAATTTTAAGTACCGCTAGTCTTCTAATTGTAGAGATTACAGCCAAGATAACTAATGTGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGAGTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGAAACAACATGTATTTGGTTGAAAG-AAGGTAACATATGCATACCCAAT--AATGATA--AAGATAAGAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAAATGAATAGCTCTCAGACTCAATTCCCTTTA]

[+] EMBL CD156681             [ACTACTACTACTACTTTAAACAGGAAGATGAGATACAA TATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCACTTGTATAGATATTTGTAAACATCTAGATCCCCAACATTATCATAAACt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD120900             [ CTACTACTACTACTTTAAACAGGAAGATGAGATACAA TATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCTAGATCCCCAACATTTTCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD083648             [                   cgAGG AGATGAGATACAAGTATATCATCCAAGCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTGGTGAACATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATTCCTTCCTCCTCAACACATAACCACGAAATTCATATTTCAATATTATAATAACGATGTTGATCAAATTGTTATTTATCGTCATCGAGGTACAGGTTCAATAGAGATATTCAATGATAAGAAAGTTGGAACAATTTCAAATTATATCAGATTTTTCTCAAAATTTAAACTTAAAGTATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATTAAGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD156539             [                                                                                                                                                                                                                                                                                                                                                                                                                                 TAAAGTATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATAAAGACATCTATTGTGAATTCAACTGAAGAAAGTATTTGAGATAACACAGTAAATATCCATTGAAATCTGATCACTTTATGAGTAGGCATATTGAGTGTTACATTTAACAATAACTTGCTCAGTATTTACCTTTCAAATTTTAAGTACCGCTAGTCTTCTAATTGTAGAGATTACAGCCAAGATAACTAATGTGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD149636             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGAGTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGAAACAACATGTATTTGGTTGAAAG AAGGTAACATATGCATACCCAAT  AATGATA  AAGATAAGAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAGCAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGGTGGTTATTTTAATGGTCGTATAATTTGGAGATAACTNCATAAAAGAAAGATNAGAA                              ]
[+] EMBL CD149348             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGAGTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGAAACAACATGTATTTGGTTGAAAG AAGGTAACATATGCATACCCAAT  AATGATA  AAGATAAGAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAA                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD111837             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGATATGTCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTAAACGGATCAAAACTGGTACATTAGTGGAGTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGAAACAACATGTATTTGGTTGAAAGAAAGGT ACATATGCATACCCAATAAAATGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD149201             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTATTTGGATCAcctc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD119717             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CATGTATTTGGTTGAAAG AAGGTAACATATGCATACCCAAT  AATGATA  AAGATAAGAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAAC                                                                                                                                              ]
[-] EMBL CD110820             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATATGCATACCC AT   ATGATANNNAGATAAGAATCATTGNATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGGTGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAA                              ]
[+] EMBL CD158106             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCAAACATAATGAAACAACATCGAAGATGATTGAAGTTGAGGTTGTGGAAAAGCTGAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATGAAGGAAAGATAAGAAATGAATAGCTCTCAGACTCAATTCCCTTTA]
[-] EMBL CD110776             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccCCAGCAACCATCCAATATAATGAAACAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAA                              ]
[-] EMBL CD149394             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAA                              ]


>consensus_10544#0 ACTACTACTACTACTTTAAACAGGAGATGAGATACAATATATCATCCAATCTATCAATAT CATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAAC ATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTC TTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTC ATCGATTCCTTCCTCCTCAACACATAACCACGAAATTCATATTTCAATATTATAATAACG ATGTTGATCAAATTGTTATTTATCGTCATCGAGGTACAGGTTCAATAGAGATATTCAATG ATAAGAAAGTTGGAACAATTTCAAATTATATCAGATTTTTCTCAAAATTTAAACTTAAAG TATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATT AAGAGATCTATTGTGAATTCAACTGAAGAAAGTATTTGAGATAACACAGTAAATATCCAT TGAAATCTGATCACTTTATGAGTAGGCATATTGAGTGTTACATTTAACAATAACTTGCTC AGTATTTACCTTTCAAATTTTAAGTACCGCTAGTCTTCTAATTGTAGAGATTACAGCCAA GATAACTAATGTGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAA GGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGG TAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGA GTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGA AACAACATGTATTTGGTTGAAAGAAGGTAACATATGCATACCCAATAATGATAAAGATAA GAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAG TCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGT GGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAA CGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGA TGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAAC TGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGT TATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAAATGAATAG CTCTCAGACTCAATTCCCTTTA



consensusID : consensus_10544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 793
fasta sequence
                              [TGGCGATCCAATTGATGCTCGCAATATGTCAGCTACTGATCAAATCCGTGCCCTTTTGGATGAATATATGGGAACAACCCGAAACGGACAAGAACCAAGAATAGAGTTTGATAATCCTCGCGTCTGTAAAAGTTATCTACTGGATTGTTGTCCAAATGAAATATTATCTGGAACGCGAATGGACTTGGGAAACTGCCTTTTCATACATGACCCTGCTCATAAGGCAGATTACCGCAAAGAACCAGACACGAAAAAAATTTCAGTATGAGCTCGATGCACTAGAGCATTTAGAGGCATTCATACGGGACTGCGACCAACGTACAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGATGAAGCTTCTCAAAAGGCTGAACACA-TAAATCAAC-TAAGCGAGCAAATA-GGAACA-AAG-CTAG-CTAAGGCC-G-AACAACTTGGCGCG-GATGGT-CATGTTGAAG-AGTCTTTGAA-ACTTATG-AAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTACGGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCTCTGCTTATCTTGGTGTGCACGACAATGACCGTCGACTCGCTGACCACTTTGGGGGAAAGTTGCATCTAGGTTTTATTGAGATTCGCCAAAAGTTAGATGAACTGAGGCAGTATGTAAACGAAAATCATATCGTTCGCAGGCGCAGGTTTGAAGGATACAACCGCTCCCTTTTTATCACAGTGGAGGAGAGACG]

[+] EMBL CD153382             [TGGCGATCCAATTGATGCTCGCAATATGTCAGCTACTGATCAAATCCGTGCCCTTTTGGATGAATATATGGGAACAACCCGAAACGGACAAGAACCAAGAATAGAGTTTGATAATCCTCGCGTCTGTAAAAGTTATCTACTGGATTGTTGTCCAAATGAAATATTATCTGGAACGCGAATGGACTTGGGAAACTGCCTTTTCATACATGACCCTGCTCATAAGGCAGATTACCGCAAAGAACCAGACACGAAAAAAATTTCAGTATGAGCTCGATGCACTAGAGCATTTAGAGGCATTCATACGGGACTGCGACCAACGTACAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGATGAAGCTTCTCAAAAGGCTGAACACA TAAATCAAC TAAGCGAGCAAATA GGAACA AAG CTAG CTAAGGCC G AACAACTTGGCGCG GATGGT CATGTTGAAG AGTCTTTGAA ACTTGTG AAGGAGGTTGAAGAATTAAACTTAGAACAAGCTACAAGCGAAGCAGATTTACGG                                                                                                                                                                                                                                                           ]
[+] EMBL CD061279             [                                                                                                                                                                                                                                                                                                                  ACTGCGACCAACGTACAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGATGAAGCTTCTCAAAAGGCTGAACACATTAAATCAACATAAGCGAGCAAATANGGAACACAAG CTAGTCTAAGGCCAGTAACAACTTGGCGCGNGGTGGTCCATGTTGAAGCAGTCTTTGAACACTTATGAAAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTACGGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCTCTGCT                                                                                                                                                                                            ]
[+] EMBL CD094924             [                                                                                                                                                                                                                                                                                                                                 CAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGATGAAGCTTCTCAAAAGGCTGAACACA TAAATCAAC TAAGCGAGCAAATA GGAACA AAG CTAG CTAAGGCC G AACAACTTGGCGCG GATGGT CATGTTGAAG AGTCTTTGAA ACTTATG AAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTACGGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCTCTGCTTATCTTGGTGTGCACGACAATGACCGTCGACTCGCTGACCACTTTGGGGGAAAGTTGCATCTAGGTTTTATTGAGATTCGCCAAAAGTTAGATGAACTGAGGCAGTATGTAAACGAAAATCATAT                                                               ]
[+] EMBL CD083635             [                                                                                                                                                                                                                                                                                                                                                                                                                                       GAACA AAGTCTAG CTAAGGCC G AACAACTTGGCGCG GATGGT CATGTTGAAG AGTCTTTGAA ACTTATG AAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTACGGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCTCTGCTTATCTTGGTGTGCACGACAATGACCGTCGACTCGCTGACCACTTTGGGGGAAAGTTGCATCTAGGTTTTATTGAGATTCGCCAAAAGTTAGATGAACTGAGGCAGTATGTAAACGAAAATCATATCGTTCGCAGGCGCAGGTTTGAAGGATACAACCGCTCCCTTTTTATCACAGTGGAGGAGAGACG]


>consensus_10544#1 TGGCGATCCAATTGATGCTCGCAATATGTCAGCTACTGATCAAATCCGTGCCCTTTTGGA TGAATATATGGGAACAACCCGAAACGGACAAGAACCAAGAATAGAGTTTGATAATCCTCG CGTCTGTAAAAGTTATCTACTGGATTGTTGTCCAAATGAAATATTATCTGGAACGCGAAT GGACTTGGGAAACTGCCTTTTCATACATGACCCTGCTCATAAGGCAGATTACCGCAAAGA ACCAGACACGAAAAAAATTTCAGTATGAGCTCGATGCACTAGAGCATTTAGAGGCATTCA TACGGGACTGCGACCAACGTACAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGG AATTAACAGATGAAGCTTCTCAAAAGGCTGAACACATAAATCAACTAAGCGAGCAAATAG GAACAAAGCTAGCTAAGGCCGAACAACTTGGCGCGGATGGTCATGTTGAAGAGTCTTTGA AACTTATGAAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTAC GGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCT CTGCTTATCTTGGTGTGCACGACAATGACCGTCGACTCGCTGACCACTTTGGGGGAAAGT TGCATCTAGGTTTTATTGAGATTCGCCAAAAGTTAGATGAACTGAGGCAGTATGTAAACG AAAATCATATCGTTCGCAGGCGCAGGTTTGAAGGATACAACCGCTCCCTTTTTATCACAG TGGAGGAGAGACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10544#0      ACTACTACTACTACTTTAAACAGGAGATGAGATACAATATATCATCCAATCTATCAATAT 60
consensus_10544#1      ------------------------------------------------------------
                                                                                   

consensus_10544#0      CATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAAC 120
consensus_10544#1      ------------------------------------------------------------
                                                                                   

consensus_10544#0      ATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTC 180
consensus_10544#1      ------------------------------------------------------------
                                                                                   

consensus_10544#0      TTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTC 240
consensus_10544#1      ------------------------------------------------------------
                                                                                   

consensus_10544#0      ATCGATTCCTTCCTCCTCAACACATAACCACGAAATTCATATTTCAATATTATAATAACG 300
consensus_10544#1      ------------------------------------------------------------
                                                                                   

consensus_10544#0      ATGTTGATCAAATTGTTATTTATCGTCATCGAGGTACAGGTTCAATAGAGATATTCAATG 360
consensus_10544#1      -TGGCGATCCAATTGATGCTCGCAATATGTCAGCTACTGATCAAATCCGTGCCCTTTTGG 59
                        **  **** ***** *  *     *     ** *** * *  ***        *    *

consensus_10544#0      ATAAGAAAGTTGGAACAATTTCAAATTATATCAGATTTTTCTCAAAATTTAAACTTAAAG 420
consensus_10544#1      ATGAATATATGGGAACAACCCGAAA------CGGACAAGAACCAAGAATAGAGTTTGATA 113
                       ** *  *  * *******    ***      * **       *** * *  *  ** *  

consensus_10544#0      TATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATT 480
consensus_10544#1      ATCCTCGCGTCTGTAAAA-GTTATCTACTGGATTGTTGTCCAAATGAAATATTA----TC 168
                             * *    ****   **  **     **  *  *  * *  ***  ***    * 

consensus_10544#0      AAGAGATCTATTGTGAATTCAACTGAAGAAAGTATTTGAGATAACACAGTAAATATCCAT 540
consensus_10544#1      TGGAA------CGCGAATG-GACTTGGGAAACTGCCTTT--TCATACA-TGACCCTGCTC 218
                         **        * ****   ***   **** *   *    * * *** * *   * *  

consensus_10544#0      TGAAATCTGATCACTTTATGAGTAGGCATATTGAGTGTTACATTTAACAATAACTTGCTC 600
consensus_10544#1      ATAAGGCAGATTACCGCA--------------AAGAACCAGACACGAAAAAAATTT---C 261
                         **  * *** **   *               **    * *    * ** ** **   *

consensus_10544#0      AGTATTTACCTTTCAAATTTTAAGTACCGCTAGTCTTCTAATTGTAGAGATTACAGCCAA 660
consensus_10544#1      AGTATGAGCTCGATGCACTA-GAGCATTTAGAGGCATTCATAC---GGGACTGCGACCAA 317
                       *****   *       * *   ** *     ** * *  *      * ** * *  ****

consensus_10544#0      GATAACTAATGTGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAA 720
consensus_10544#1      CGTA-CAGATGT------TGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGA 370
                         ** *  ****      * * ** *  *** *         * * *** *  *  *  *

consensus_10544#0      GGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGG 780
consensus_10544#1      TGAAGCTTCTCAAAAGG--CTGAACACATAAATCAAC-------TAAGCGAGCAAATAGG 421
                        ***  *     **  *  * ***  *  ****** *       ***      *** ***

consensus_10544#0      TAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGA 840
consensus_10544#1      AACAAAGCTAGCTAAGGCCGAACAACTTGGCGCGGATGGTCATGTTGAAGAGTCTTTGAA 481
                        *  * * **  * *    **    * **            *   **     *   ** *

consensus_10544#0      GTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGA 900
consensus_10544#1      ------ACTTATGAAGGAGGTTGA---AGAATTAAACTTA---GAAAAAGCTAAAAGCGA 529
                             **  **   * *  **     * ***  ** * *   *** **  * **  ***

consensus_10544#0      AACAACATGTATTTGGTTGAAAGAAGGTAACATATGCATACCCAATAATGATAAAGATAA 960
consensus_10544#1      AGCAG-ATTTACG-GACTGCAATAC--CAACAAGCACCTACC-AGCAACA--AAAGCTCC 582
                       * **  ** **   *  ** ** *    ****    * **** *  **    **** *  

consensus_10544#0      GAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAG 1020
consensus_10544#1      GAGTCT----GTGAAGTTTGCTCTGCTTATCT----TGGTGTGCACGACAATGA------ 628
                       ** **      *  *    *   *** ***      * **  * * *  ** *       

consensus_10544#0      TCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGT 1080
consensus_10544#1      -CCGTCGAC--TCGCTGACCACTTTGGGGGAAAGTTGCATCTAGGTTTTATTGAGATTCG 685
                        ** ** **   *    * **   **    **  * * ** *   *   ****** **  

consensus_10544#0      GGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAA 1140
consensus_10544#1      CCAAAAGTTAGATG-AACTGAGGCAGTATGTAAACGAAAATCATATCGTTCGCAGGCGCA 744
                         ***** *  *** ***    * ** *  *   * * * **  ** ***** * *   *

consensus_10544#0      CGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGA 1200
consensus_10544#1      GGTTTGAAGGATACAACCGCTCCCTTTTTATCACAGTGGAGGAGAGACG----------- 793
                        ** *  **   ** * *   *      *** *      *  *  ** *           

consensus_10544#0      TGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAAC 1260
consensus_10544#1      ------------------------------------------------------------
                                                                                   

consensus_10544#0      TGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGT 1320
consensus_10544#1      ------------------------------------------------------------
                                                                                   

consensus_10544#0      TATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAAATGAATAG 1380
consensus_10544#1      ------------------------------------------------------------
                                                                                   

consensus_10544#0      CTCTCAGACTCAATTCCCTTTA 1402
consensus_10544#1      ----------------------
                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)