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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 526 fasta sequence
[TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG-AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC-AACTAAAATTGTC-GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT-ATCTTTTGTTTATCCTGTGTTAGATC]
[+] EMBL CD158262 [TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGNGGNATATA ]
[+] EMBL CD158165 [TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTANATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAANATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTT ]
[+] EMBL CD158297 [TGACACACGAAACCGTACGAGCAGTCTAGAGTGCGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAGATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTGAAACT AATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAA CACTAAA ]
[+] EMBL CD158250 [TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGA ]
[+] EMBL CD158163 [gGACACACGAAACCGCACGAGCAGTCGAGAGTACGTATCGGCCCTGAGATCTGCTTAGCCCAGCGAGTTAAGTCCAAAACACCAATAACAGCCTCAGAGGAATGAATCATTATTTACAAACACGCTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATATCTCAAGAACCGTATGATAATAAGTCAAGGTCAAAATACGCTATGGATAAGAGAAATACAAATATGAATAGTTCGGTTACGTAATAACTGTACAGTAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCTAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAACAAACT AAATTGTCGGGTC AAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGTNATC TTTGTT ]
[+] EMBL CD156654 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACGGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ]
[+] EMBL CD156755 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGGGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ]
[+] EMBL CD156743 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ]
[+] EMBL CD156638 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGGTT ]
[+] EMBL CD156661 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ]
[+] EMBL CD156746 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTAGCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ]
[-] EMBL CD158083 [ ACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ]
[-] EMBL CD156614 [ GGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTGCCATTCGTAATTCACCGGGGGATATAGCAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAGAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTTA ]
[-] EMBL CD158089 [ TATAACAGAATACGAAATGTCATTGGCCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ]
[-] EMBL CD158245 [ TATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAAACCGT ATCTTTTGTTT ]
[-] EMBL CD157920 [ ATGTTTGGTACTTCGGTTGCAACATAAGATC AACTATAATTGTC GGTCAAAAGAACAGGTAATATTAGTTTAACGTATCAACGGTAGTCGATTTGTGAACCCGT ATCTTTTGTTTATCCTGTGTTAGATC]
[-] EMBL CD157917 [ GGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATTAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ]
consensusID : consensus_10547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence
[TCATTATTTACAAACATACTGGGTTTTTATACAAACCATAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAATCAAAGATCAAAATAAAGCTAATGATAAGAGAAACACGAATATGAATAGTTTAGTTACGTAACAATTGCACAATAGGAAATAGGCATAATACATTGATCGATAAATAGTCCTTAGAGTTACCATTCATAATTCACCAG]
[+] EMBL CD167146 [TCATTATTTACAAACATACTGGGTTTTTATACAAACCATAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAATCAAAGATCAAAATAAAGCTAATGATAAGAGAAACACGAATATGAATAGTTTAGTTACGTAACAATTGCACAATAGGAAATAGGCATAATACATTGATCGATAAATAGTCCTTAGAGTTACCATTCATAATTCACCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10547#0 TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCC 60
consensus_10547#1 ------------------------------------------------------------
consensus_10547#0 CAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAA 120
consensus_10547#1 ----------------------------------------------TCATTATTTACAAA 14
**************
consensus_10547#0 CACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGT 180
consensus_10547#1 CATACTGGGTTTTTATACAAACCATAGTAATCAATAAACTGATTATAACTCAAGAATCGT 74
** ********************* ***********************************
consensus_10547#0 ATGATAATAAGTCAAGG-TCAAAATAA-GCTAATGATAAGAGAAATACAAATATGAATAG 238
consensus_10547#1 ATGATAATAAATCAAAGATCAAAATAAAGCTAATGATAAGAGAAACACGAATATGAATAG 134
********** **** * ********* ***************** ** ***********
consensus_10547#0 TTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGA 298
consensus_10547#1 TTTAGTTACGTAACAATTGCACAATAGGAAATAGGCATAATACATTGATCGATAAATAGT 194
** ********** ** ** ******************* ********** ********
consensus_10547#0 CCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGAC 358
consensus_10547#1 CCTTAGAGTTACCATTCATAATTCACCAG------------------------------- 223
*** * ** ******** ********* *
consensus_10547#0 CCAGAAACCCTCTACTTATCTCTGAACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAA 418
consensus_10547#1 ------------------------------------------------------------
consensus_10547#0 CATAAGAACAACTAAAATTGTCGGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAAC 478
consensus_10547#1 ------------------------------------------------------------
consensus_10547#0 GGTAGTCGATTTGTGAATCCGTATCTTTTGTTTATCCTGTGTTAGATC 526
consensus_10547#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||