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Schistosoma mansoni
cluster # 10549 cluster # 10549       Sequences # 18       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10549#0 length = 1142 sequences # 6  
consensus_10549#1 length = 1087 sequences # 8  
consensus_10549#2 length = 532 sequences # 1  
consensus_10549#3 length = 444 sequences # 3  

consensusID : consensus_10549#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1142
fasta sequence
                              [NATTTCGGCACGAGGACGAAAACAGGCA-----CGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAATCAATTCGACGAGCGACTGTTAACACTTTTGGTTATATTGCCAAAGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAAATAATTTAAAGGTTCAAGAGCGTCAAAATCGTGTTTGCACAACTGTTGCCATTGCTATCGTTGCAGAGACATGTAGTCCATTTACTGTTTTACCTGGTCTTATGAATGAATATAGGGTCCCTGAACTAAATGTTCAAAATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATATTGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAATGGACCGGTAACTTAAAAATTCCTTAATATACTCTCTTTGTATGCTGTTTGCTGACCTAATGTATTTTTCTTTTCAGTGATCTTGTGCACAGGCAAACTGCGATGACTGCAGTCGCTCATATGGCTCTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCTCCTGAACGTCGTTTGGCCTAATGTCTTGGAAACTTCACCACATGTCATTCAGGCTTTCATGTTTTGCATTGAAGGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCAGTATTGTCTTCAAGGCTTATTTCATCCTGCTAGGAAAGTGAGAGATATGATGTGGAAAGTGTACAATACTATTTACATTGGTAATCAAGATGGCTTAGTTTATGGTTTCCCACGTATTCCTGACGAACAAGATCACACTTATATCAGACATGAATTGTCTTATATTTTGTGAAAATGTATTTGTCAGTATTTTCAATCCTATTTACTTCTTATTT-TCGTTCCCAAACCTTTATGTTTTGTTACTACTGAATTATTGTCCTTCAAATAAGTTCCTGATATCAGGATCTATTTACTCCTGAGGTTTTACACATTATCGTGGTCTTGTATTTAAACTAACTTTTCGGATTAATAAATCAGTTTAATTG--GAAAAAAAAAAAAAAAAAA]

[+] EMBL CD082349             [NATTTCGGCACGAGGACGAAAACAGGCA     CGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAATCAATTCGACGAGCGACTGTTAACACTTTTGGTTATATTGCCAAAGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAAATAATTTAAAGGTTCAAGAGCGTCAAAATCGTGTTTGCACAACTGTTGCCATTGCTATCGTTGCAGAGACATGTAGTCCATTTACTGTTTTACCTGGTCTTATGAATGAATATAGGGTCCCTGAACTAAATGTTCAAAATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATATTGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAATGGACCGGTAACTTAAAAATTCCTTAATATACTCTCTTTGTATGCTGTTTGCTGACCTAATGTATTTTTCTTTTCAGTGATCTTGTGCACAGGCAAACTGCGATGACTGCAGTCGCTCATATGGCTCTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD083757             [        ctCGAGGCCCAGAATCGGCACGAGGCGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAATCAATTCGACGAGCGACTGTTAACACTTTTGGTTATATTGCCAAAGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAAATAATTTAAAGGTTCAAGAGCGTCAAAATCGTGTTTGCACAACTGTTGCCATTGCTATCGTTGCAGAGACATGTAGTCCATTTACTGTTTTACCTGGTCTTATGAATGAATATAGGGTCCCTGAACTAAATGTTCAAAATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATATTGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAATGGACCGGTAACTTAAAAATTCCTTAATATACTCTCTTTGTATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AI111036             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tggaccGTGATCTTGTGCACAGGCAAACTGCGATGACTGCAGTCGCTCATATGGCTCTTGGTGTATATGGGTTCGGCTGTGAAAACGCTCTTTTGCATCTCCTGAACGTCGTTTGGCCTAATGTCTTGGAAACTTCACCACATGTCATTCAGGCTTTCATGTTTTGCATTGAAGGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCAGTATTGTCTTCAAGGCTTATTTCATCCTGCTAGGAAAGTGAGAGATATGATGTGGAAAGTGTACAATACTATTTACATTGGTAATCAAGATGGCTTAGTTTATGGTTTCCCACGTATTCCTGACNAACAAGATCACACTTATATCANACATGAATTGTCTTATATTTTGTGAAAATGTATTTGTCAGTATTTNCAATCCTATTTACTTCTTATTTNCCGTTCCCAAAC                                                                                                                                                               ]
[-] EMBL AI395483             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCATCCTGCTAGGAAAGTGAGAGATATGATGTGGAAAGTGTACAATACTATTTACATTGGTAATCAAGATGGCTTAGTTTATGGTTTCCCACGTATTCCTGACGAACAAGATCACACTTATATCAGACATGAATTGTCTTATATTTTGTGAAAATGTATTTGTCAGTATTTTCAATCCTATTTACTTCTTATTT TCGTTCCCAAACCTTTATGTTTTGTTACTACTGAATTATTGTCCTTCAAATAAGTTCCTGATATCAGGATCTATTTACTCCTGAGGTTTTACACATTATCGTGGTCTTGTATTTAAACTAACTTTTCGGATTAATAAATCAGTTTANTTG  GAAAAAAAAAAAAAAAAAA]
[-] EMBL AI394965             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGTTTTGGAAAGTGTCCAATACTATTACCATTGTTAACCAGGTTGGTTAAGTTATTGGTTT CCAAGTATTCCTGACGAACAAGATCACACTTATATCAGACATGAATTGTCTTATATTTTGTGAAAATGTATTTGTCAGTATTTTCAATCCTATTTACTTCTTATTT TTGTTCCCAAACCTTTATGTTTTGTTACTACTGAATTATTGTCCTTCAAATAAGTTCCTGATATCAGGATCTATTTACTCCTGAGGTTTTACACATTATCGTGGTCTTGTATTTAAACTAACTTTTCGGATTAATAAATCAGTTTAATTGATTAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395251             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGATGTGGAAAGTGTACAATACTATTTACATTGGTAATCAAGATGGCTTAGTTTATGGTTTCCCACGTATTCCTGACGAACAAGATCACACTTATATCAGACATGAATTGTCTTATATTTTGTGAAAATGTATTTGTCAGTATTTTCAATCCTATTTACTTCTTATTT TCGTTCCCAAACCTTTATGTTTTGTTACTACTGAATTATTGTCCTTCAAATAAGTTCCTGATATCAGGATCTATTTACTCCTGAGGTTTTACACATTATCGTGGTCTTGTATTTAAACTAACTTTTCGGATTAATAAATCAGTTTAATTG  AAAAAAAAAAAAAAAAA  ]


>consensus_10549#0 NATTTCGGCACGAGGACGAAAACAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTG TTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCT GCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAATCAATTCGACGAGCGACTGTTA ACACTTTTGGTTATATTGCCAAAGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAA ATAATTTAAAGGTTCAAGAGCGTCAAAATCGTGTTTGCACAACTGTTGCCATTGCTATCG TTGCAGAGACATGTAGTCCATTTACTGTTTTACCTGGTCTTATGAATGAATATAGGGTCC CTGAACTAAATGTTCAAAATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATATTG GTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAATGG ACCGGTAACTTAAAAATTCCTTAATATACTCTCTTTGTATGCTGTTTGCTGACCTAATGT ATTTTTCTTTTCAGTGATCTTGTGCACAGGCAAACTGCGATGACTGCAGTCGCTCATATG GCTCTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCTCCTGAACGTCGTT TGGCCTAATGTCTTGGAAACTTCACCACATGTCATTCAGGCTTTCATGTTTTGCATTGAA GGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCAGTATTGTCTTCAAGGCTTATTT CATCCTGCTAGGAAAGTGAGAGATATGATGTGGAAAGTGTACAATACTATTTACATTGGT AATCAAGATGGCTTAGTTTATGGTTTCCCACGTATTCCTGACGAACAAGATCACACTTAT ATCAGACATGAATTGTCTTATATTTTGTGAAAATGTATTTGTCAGTATTTTCAATCCTAT TTACTTCTTATTTTCGTTCCCAAACCTTTATGTTTTGTTACTACTGAATTATTGTCCTTC AAATAAGTTCCTGATATCAGGATCTATTTACTCCTGAGGTTTTACACATTATCGTGGTCT TGTATTTAAACTAACTTTTCGGATTAATAAATCAGTTTAATTGGAAAAAAAAAAAAAAAA AA



consensusID : consensus_10549#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1087
fasta sequence
                              [GCTGCTCTTGCTGAAGCAGCCACTCCTTATGGCATAGAATCGTTTGACTCCGTTTTGGAACCTNTGTGGCGTGGTATAAGAACTCATCGAGGCAAAGGTTTAGCTGCTTTCCTCAAGGCTATTGGCTACCTCATCCCTCTAATGGATGCAGAGTATGCCAATTATTATACCCGTGAAGTTATGTTAATCTTGATCCGTGAGTTTCAGTCTCCTGATGAAGAAATGAAAAAAATCGTTCTTAAAGTAGTCAAGCAGTGCTGTGCAACGGACGGTGTTGAACCTGATTATATTAAGTCAGAAATTCTACCACCGTTTTTCCGTAGCTTTTGGACACAACGTATGGCTCTAGATCGGCGCAATTACAGACAGCTGGTTGATACAACTGTGGAAATAGCAAATAAAGTCGGTGCAGCTGATATCATCTCTAGAATTGTAGATGACCTCAAAGATGAGTCCGAACCTTATCGTAAAATGGTGATGGAGACTATCGAAAAAGTTATGTCTGCACTAGGAAGCACAGAAGTTGATGCTCGACTTGAAGAACAATTAATCGATGGTATATTGTATGCTTTCCAGGAACAAAGTACCGAAGACGCTGTCATGTTGATCGGCTTTGGAACTATTGTACAATCACTTGGTAAACGTGTCAAACCGTACTTGCCCCAAATTTGTGGTACAATCTTATGGCGTCTTAATAACAAATCGGCTAAAGTTCGTCAGCAGGCGGCCGACCTTATTAGTCGTATTGCTGGTGTAATGAAAGTGTGCCAAGAAGAAAAACTAATGGGTCATTTGGGTGTAGTTTTATATGAATACCTTGGTGAAGAATATCCGGAAGTACTTGGAAGTATTTTGGGTGCCCTTAAGGCTATTGTAAATGTAATTGGTATGACCAAAATGACTCCTCCAATTAAAGAACTTCTGCCGAGATTGACACCAATATTGAAAAACAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAAT]

[-] EMBL CD146748             [GCTGCTCTTGCTGAAGCAGCCACTCCTTATGGCATAGAATCGTTTGACTCCGTTTTGGAACCTNTGTGGCGTGGTATAAGAACTCATCGAGGCAAAGGTTTAGCTGCTTTCCTCAAGGCTATTGGCTACCTCATCCCTCTAATGGATGCAGAGTATGCCAATTATTATACCCGTGAAGTTATGTTAATCTTGATCCGTGAGTTTCAGTCTCCTGATGAAGAAATGAAAAAAATCGTTCTTAAAGTAGTCAAGCAGTGCTGTGCAACGGACGGTGTTGAACCTGATTATATTAAGTCAGAAATTCTACCACCGTTTTTCCGTAGCTTTTGGACACAACGTATGGCTCTAGATCGGCGCAATTACAGACAGCTGGTTGATACAACTGTGGAAATAGCAAATAAAGTCGGTGCAGCTGATATCATCTCTAGAATTGTAGATGACCTCAAAGATGAGTCCGAACCTTATCGTAAAATGGTGATGGAGACTATCGAAAAAGTTATGTCTGCACTAGGAAGCACAGAAGTTGATGCTCGACTTGAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD146998             [GCTGCTCTTGCTGAAGCAGCCACTCCTTATGGCATAGAATCGTTTGACTCCGTTTTGGAACCTTTGTGGCGTGGTATAAGAACTCATCGAGGCAAAGGTTTAGCTGCTTTCCTCAAGGCTATTGGCTACCTCATCCCTCTAATGGATGCAGAGTATGCCAATTATTATACCCGTGAAGTTATGTTAATCTTGATCCGTGAGTTTCAGTCTCCTGATGAAGAAATGAAAAAAATCGTTCTTAAAGTAGTCAAGCAGTGCTGTGCAACGGACGGTGTTGAACCTGATTATATTAAGTCAGAAATTCTACCACCGTTTTTCCGTAGCTTTTGGACACAACGTATGGCTCTAGATCGGCGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD128803             [                                                                                                                                                                                                                                                                                                                                 AGCTTTTGGACACAACGTATGGCTCTAGATCGGCGCAATTACAGACAGCTGGTTGATACAACTGTGGAAATAGCAAATAAAGTCGGTGCAGCTGATATCATCTCTAGAATTGTAGATGACCTCAAAGATGAGTCCGAACCTTATCGTAAAATGGTGATGGAGACTATCGAAAAAGTTATGTCTGCACTAGGAAGCACAGAGGTTGATGCTCGACTTGAAGAACAATTAATCGATGGTATATTGTATGCTTTCCAGGAACAAAGTACCGAAGACGCTGTCATGTTGATCGGCTTTGGAACTATTGTACAATCACTTGGTAAACGTGTCAAACCGTACTTGCCCCAAATTTGTGGTACAATCTTATGGCGTCTTAATAACAAATCGGCTAAAGTTCGTCAGCAGGCGGCCGACCTTATTAGTCGTATTGCTGGTGTAATGAAAGTGTGCCAAGAAGAAAAACTAATGGGTCATTTGGGTGTAGTTTTATAT                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD112495             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCACTTGGTAAACGTGTCAAACCGTACTTGCCCCAAATTTGTGGTACAATCTTATGGCGTCTTAATAACAAATCGGCTAAAGTTCGTCAGCAGGCGGCCGACCTTATTAGTCGTATTGCTGGTGTAATGAAAGTGTGCCAAGAAGAAAAACTAATGGGTCATTTGGGTGTAGTTTTATATGAATACCTTGGTGAAGAATATCCGGAAGTACTTGGAAGTATTTCGGGTGCCCTTAAGGCTATTGTAAATGTAATTGGTATGACCAAAATGACTCCTCCAATTAAAGAACTTCTGCCGAGATTGACACCAATATTGAAAAACAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTA                   ]
[+] EMBL CD165596             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          aaTTGTGGTACAATCTTATGGCGTCTTAATAACAAATCGGCTAAAGTTCGTCAGCAGGCGGCCGACCTTATTAGTCGTATTGCTGGTGTAATGAAAGTGTGCCAAGAAGAAAAACTAATGGGTCATTTGGGTGTAGGTTTATATGAATACCTTGGTGAAGAATATCCGGAAGTACTTGGAAGTATTTTGGGTGCCCTTAAGGCTATTGTAAATGTAATTGGTATGACCAAAATGACTCCTCCAATTAAAGAACTTCTGCCGAGATTGACACCAATA                                                                                                                                                 ]
[+] EMBL CD119701             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAACTAATGGGTCATTTGGGTGTAGTTTTATATGAATACCTTGGTGAAGAATATCCGGAAGTACTTGGAAGTATTTTGGGTGCCCTTAAGGCTATTGTAAATGTAATTGGTATGACCAAAATGACTCCTCCAATTAAAGAACTTCTGCCGAGAT                                                                                                                                                            ]
[-] EMBL CD140518             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AACTAATGGGTCATTTGGGTGTAGTTTTATATGAATACCTTGGTGAGGAATATCCGGAAGTACTTGGAAGTATTTTGGGTGCCCTTAAGGCTATTGTAAATGTAATTGGTATGACCAAAATGACTCCTCCAATTAAAGAACTTCTGCCGAGATTGACACCAATATTGAAAAACAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATC                                        ]
[-] EMBL CD110792             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAATGTAATTGGTATGACCAAAATGACTCCTCCAATTAAAGAACTTCTGCCGCGATTGACACCAATATTGAAAAACAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAAT]


>consensus_10549#1 GCTGCTCTTGCTGAAGCAGCCACTCCTTATGGCATAGAATCGTTTGACTCCGTTTTGGAA CCTNTGTGGCGTGGTATAAGAACTCATCGAGGCAAAGGTTTAGCTGCTTTCCTCAAGGCT ATTGGCTACCTCATCCCTCTAATGGATGCAGAGTATGCCAATTATTATACCCGTGAAGTT ATGTTAATCTTGATCCGTGAGTTTCAGTCTCCTGATGAAGAAATGAAAAAAATCGTTCTT AAAGTAGTCAAGCAGTGCTGTGCAACGGACGGTGTTGAACCTGATTATATTAAGTCAGAA ATTCTACCACCGTTTTTCCGTAGCTTTTGGACACAACGTATGGCTCTAGATCGGCGCAAT TACAGACAGCTGGTTGATACAACTGTGGAAATAGCAAATAAAGTCGGTGCAGCTGATATC ATCTCTAGAATTGTAGATGACCTCAAAGATGAGTCCGAACCTTATCGTAAAATGGTGATG GAGACTATCGAAAAAGTTATGTCTGCACTAGGAAGCACAGAAGTTGATGCTCGACTTGAA GAACAATTAATCGATGGTATATTGTATGCTTTCCAGGAACAAAGTACCGAAGACGCTGTC ATGTTGATCGGCTTTGGAACTATTGTACAATCACTTGGTAAACGTGTCAAACCGTACTTG CCCCAAATTTGTGGTACAATCTTATGGCGTCTTAATAACAAATCGGCTAAAGTTCGTCAG CAGGCGGCCGACCTTATTAGTCGTATTGCTGGTGTAATGAAAGTGTGCCAAGAAGAAAAA CTAATGGGTCATTTGGGTGTAGTTTTATATGAATACCTTGGTGAAGAATATCCGGAAGTA CTTGGAAGTATTTTGGGTGCCCTTAAGGCTATTGTAAATGTAATTGGTATGACCAAAATG ACTCCTCCAATTAAAGAACTTCTGCCGAGATTGACACCAATATTGAAAAACAGGCACGAA AAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTAT GTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATTAAAAGCGCAT AAAAAAT



consensusID : consensus_10549#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence
                              [ACATTATGTCATAAAACATCAGAAATGCAGTTGTCTACTTATAAACAGTCGATCCGCCCTACGCTCAATAAGTTTGATATTATCTAGTTAGACCTTGGTAATGATACTCGTCTTGTTTTCTAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAATCAATTCGACGAGCGACTGTTAACACTTTTGGTTATATTGCCAAAGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAAATAATTTAAAGGTGAGTTTTTTAGAGTTTGTTTATCGAAACCAGTTACTTACAGTTTATTCTCTGTTATCTTCCTCACTTTCATTCGTTTTCCCCATTTTCATATTAATTTTTCTTTTCAGGTTCAAGAGCGTCAAAATCGTGTTTGCACAACTGTTGCCATTGCTATCGTTGCAGAGACATGTAGTCCATTTA]

[-] EMBL CD180859             [ACATTATGTCATAAAACATCAGAAATGCAGTTGTCTACTTATAAACAGTCGATCCGCCCTACGCTCAATAAGTTTGATATTATCTAGTTAGACCTTGGTAATGATACTCGTCTTGTTTTCTAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAATCAATTCGACGAGCGACTGTTAACACTTTTGGTTATATTGCCAAAGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAAATAATTTAAAGGTGAGTTTTTTAGAGTTTGTTTATCGAAACCAGTTACTTACAGTTTATTCTCTGTTATCTTCCTCACTTTCATTCGTTTTCCCCATTTTCATATTAATTTTTCTTTTCAGGTTCAAGAGCGTCAAAATCGTGTTTGCACAACTGTTGCCATTGCTATCGTTGCAGAGACATGTAGTCCATTTA]


>consensus_10549#2 ACATTATGTCATAAAACATCAGAAATGCAGTTGTCTACTTATAAACAGTCGATCCGCCCT ACGCTCAATAAGTTTGATATTATCTAGTTAGACCTTGGTAATGATACTCGTCTTGTTTTC TAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTGTTGGACGAATAGCAGACCGTGG ATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCTGCTTTGAACTCTTGGAATTATT AAAAGCGCATAAAAAATCAATTCGACGAGCGACTGTTAACACTTTTGGTTATATTGCCAA AGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAAATAATTTAAAGGTGAGTTTTTT AGAGTTTGTTTATCGAAACCAGTTACTTACAGTTTATTCTCTGTTATCTTCCTCACTTTC ATTCGTTTTCCCCATTTTCATATTAATTTTTCTTTTCAGGTTCAAGAGCGTCAAAATCGT GTTTGCACAACTGTTGCCATTGCTATCGTTGCAGAGACATGTAGTCCATTTA



consensusID : consensus_10549#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 444
fasta sequence
                              [TTTACCTGGTCTTATGAATGAATATAGGGTCCCTGAACTAAATGTTCAAAATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATATTGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAATGGACCGTGATCTTGTGCACAGGCAAACTGCGATGACTGCAGTCGCTCATATGGCTCTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCTCCTGAACGTCGTTTGGCCTAATGTCTTGGAAACTTCACCACATGTCATTCAGGCTTTCATGTTTTGCATTGAAGGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCAGTATTGTCTTCAAGGCTTATTTCATCCTGCTAGGAAAGTGAGAGATATGATGTGGAAAGTGTACAATACTATTTACATTGGTAA]

[-] EMBL CD196034             [TTTACCTGGTCTTATGAATGAATATAGGGTCCCTGAACTAAATGTTCAAAATGGTGTTNTAAAATCTCTGGCTTTCATGTTCGAGTATATTGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAATGGACCGTGATCTTGTGCACAGGCAAACTGCGATGACTGCAGTCGCTCATATGGCTCTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCTCCTGAACGTCGT                                                                                                                                                                                       ]
[+] EMBL CD183987             [                                                  ATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATATTGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAATGGACCGTGATCTTGTGCACAGGCAAACTGCGATGACTGCAGTCGCTCATATGGCTCTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCTCCTGAACGTCGTTTGGCCTAATGTCTTGGAAACTTCACCACATGTCATTCAGGCTTTCATGTTTTGCATTGAAGGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCAGTATTGTCTTCAAGGCTTATTTCATCCTGCTAGGAAAGTGAGAGATATGATGTGGAAAGTGTACAATACTATTTACATTGGTAA]
[+] EMBL CD184063             [                                                  ATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATATTGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAATGGACCGTGATCTTGTGCACAGGCAAACTGCGATGACTGCAGTCGCTCATATGGCTCTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCTCCTGAACGTCGNTTGGCCTAATGTCTTGGAAACTTCACCACATGTCATTCAGGCTTTCATGTTTTGCATTGAAGGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCAGTATTGTCTTCAAGGCTTATTTCATCCTGCTAGGAAAGTGAGAGATATGATGTGGAAAGTGTACAATACTATTTACATTGGTAA]


>consensus_10549#3 TTTACCTGGTCTTATGAATGAATATAGGGTCCCTGAACTAAATGTTCAAAATGGTGTTTT AAAATCTCTGGCTTTCATGTTCGAGTATATTGGTGAAATGAGCAAAGACTACATATATGC CGTAACTCCTCTGTTAGAAGATGCACTAATGGACCGTGATCTTGTGCACAGGCAAACTGC GATGACTGCAGTCGCTCATATGGCTCTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCT TTTGCATCTCCTGAACGTCGTTTGGCCTAATGTCTTGGAAACTTCACCACATGTCATTCA GGCTTTCATGTTTTGCATTGAAGGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCA GTATTGTCTTCAAGGCTTATTTCATCCTGCTAGGAAAGTGAGAGATATGATGTGGAAAGT GTACAATACTATTTACATTGGTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10549#0      NATTTCGGCACGAGGACGAAAACAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTG 60
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      ------------------------------------------------------------
consensus_10549#1      ------------GCTGCTCTTGCTGAAGCAGCCACTCCTTATGGCATAGAATCGTTTGAC 48
                                                                                   

consensus_10549#0      TTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCT 120
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      ------------------------------------------------------------
consensus_10549#1      TCCGTTTTGGAACCTNTGTGGCGTGGTATAAGAACTCATCGAGGCAAAGGTTTAGCTGCT 108
                                                                                   

consensus_10549#0      GCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAATCAATTCGACGAGCGACTGTTA 180
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      ------------------------------------------------------------
consensus_10549#1      TTCCTCAAGGCTATTGGCTACCTCATCCCTCTAATGGATGCAGAGTATGCCAATTATTAT 168
                                                                                   

consensus_10549#0      ACACTTTTGGTTATATTGCCAAAGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAA 240
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      ------------------------------------------------------------
consensus_10549#1      ACCCGTGAAGTTATGTTAATCTTG-ATCCGTGAGTTTCAGTCTCCTGATGAAGAAATGAA 227
                                                                                   

consensus_10549#0      ATAATTTAAAGGTTCAAGAGCGTCAAAATCGTGTTTGCACAACTGTTGCCATTGCTATCG 300
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      -----------------------------------------------------------A 1
consensus_10549#1      AAAAATCGTTCTTAAAGTAGTCAAGCAGTGCTGTGCAACGGACGGTGTTGAACCTGATTA 287
                                                                                   

consensus_10549#0      TTGCAGAGACATGTAGTCCATTTACTGTTTTACCTGGTCTTATGAATGAATATAGGGTCC 360
consensus_10549#3      ----------------------------TTTACCTGGTCTTATGAATGAATATAGGGTCC 32
consensus_10549#2      CATTATGTCATAAAACATCAGAAATGCAGTTGTCTA--CTTATAAAC-AGTCGATCCGCC 58
consensus_10549#1      TATTAAGTCA-GAAATTCTACCACCGTTTTTCCGTAG-CTTTTGGACACAACGTATGGCT 345
                                                    **   *   *** *  *            * 

consensus_10549#0      CTGAACTAAAT--GTTCAAAATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATAT 418
consensus_10549#3      CTGAACTAAAT--GTTCAAAATGGTGTTTTAAAATCTCTGGCTTTCATGTTCGAGTATAT 90
consensus_10549#2      CTACGCTCAATAAGTTTGATATTATCTAGTTAGACCT-TGGTAATGATACTCGTCT-TGT 116
consensus_10549#1      CTA-GATCGGCGCAATTACAGACAGCTGGTTGATACAACTGTGGAAATAGCAAATAAAGT 404
                       **    *        *          *  *     *    *     **           *

consensus_10549#0      TGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAAT 478
consensus_10549#3      TGGTGAAATGAGCAAAGACTACATATATGCCGTAACTCCTCTGTTAGAAGATGCACTAAT 150
consensus_10549#2      TTTCTAGGCACGAAAAAGTCGAAGAGA-ACTGTATCGATCTTGTTGGACG----AATAGC 171
consensus_10549#1      CGGTGCAGCTGATATCATCTCTAGA---ATTGTAGATGACCTCAAAGATGAGTCCGAACC 461
                                    *        * *      ***       *    ** *       *  

consensus_10549#0      GGACCGGTAACTTAAAAATTCCTTAATATACTCTCTTTGTATGCTGTTTGCTGACCTAAT 538
consensus_10549#3      GGACCG------------------------------------------------------ 156
consensus_10549#2      AGACCGTGGATCAGAGTATGTCTC--------TTCTAGAGAATGGATGCGTATCTGCTTT 223
consensus_10549#1      TTATCGTAAAATGGTGATGGAGAC---------TATCGAAAA-AGTTATGTCTGCACTAG 511
                         * **                                                      

consensus_10549#0      GTATTTTTCTTTTCAGTGATCT-TGTGCACAGGCAAACTGCGATGACTG-CAGTCGCTCA 596
consensus_10549#3      ----------------TGATCT-TGTGCACAGGCAAACTGCGATGACTG-CAGTCGCTCA 198
consensus_10549#2      GAACTCTTGGAATTATTAAAAG-CGCATAAAAAATCAATTCGACGAGCGACTGTTAACAC 282
consensus_10549#1      GAAGCACAGAAGTTGATGCTCGACTTGAAGAACAATTAATCGATGGTATATTGTATGCTT 571
                                       *           * *         *** *       **      

consensus_10549#0      TATGGCT-CTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCTCCTGAACG 655
consensus_10549#3      TATGGCT-CTTGGTGTATATGGGTTCGGCTGTGAAGACGCTCTTTTGCATCTCCTGAACG 257
consensus_10549#2      TTTTGGT-TATATTGCCAAAGCAATCGGTCCACATGATGTTTTGGCGACTCTCTTAAATA 341
consensus_10549#1      TCCAGGAACAAAGTACCGAAG-ACGCTGTCATGTTGATCGGCTT-TGGAACTATTGTACA 629
                       *   *        *    * *    * *       **     *   *   **  *  *  

consensus_10549#0      TCGTTTGGCCTAATGTCTTGGAAACT--TCACCACATGTCATT----CAGGCTTTCATGT 709
consensus_10549#3      TCGTTTGGCCTAATGTCTTGGAAACT--TCACCACATGTCATT----CAGGCTTTCATGT 311
consensus_10549#2      ATTTAAAGGTGAGTTTTTTAGAGTTTGTTTATCG-AAACCAGT----TA--CTTACAGTT 394
consensus_10549#1      ATCACTTGGTAAACGTGTCAAACCGTACTTGCCCCAAATTTGTGGTACAATCTTATGGCG 689
                              *   *   * *   *   *  *   *  *      *     *  ***      

consensus_10549#0      TTTGCATTGAAGGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCAGTATTGTCTTC 769
consensus_10549#3      TTTGCATTGAAGGTCTCCGTGTTGCACTTGGTCCTAACAAAGTACTTCAGTATTGTCTTC 371
consensus_10549#2      TATTCTCTGTTATCTTCCTCACTTTCATTCGTTTTCCC----CATTTTCATATTAATTTT 450
consensus_10549#1      TCTTAATAACAAATCGGCTAAAGTTCGTCAGCAGGCGGCCGACCTTATTAGTCGTATTGC 749
                       * *              *         *  *              *           *  

consensus_10549#0      AAGGCTTATTTCATCCTGCTAGGAAAGTGAG------AGATATGATGTGGAAAGTGTACA 823
consensus_10549#3      AAGGCTTATTTCATCCTGCTAGGAAAGTGAG------AGATATGATGTGGAAAGTGTACA 425
consensus_10549#2      -----TCTTTTCAGGTT--CAAGAGCGTCAA------AATCGTGTTTGCACAACTGT-TG 496
consensus_10549#1      TGGTGTAATGAAAGTGTGCCAAGAAGAAAAACTAATGGGTCATTTGGGTGTAGTTTTATA 809
                            *  *   *   *   * **     *            *        *  * *   

consensus_10549#0      ATACTATTTACATTGGTAATCAAGATGGCTTAGTTTATGGTTTCCCACGTATTCCTGACG 883
consensus_10549#3      ATACTATTTACATTGGTAA----------------------------------------- 444
consensus_10549#2      CCATTGCTATCGTTGCAGAGACATGTAGTCCATTTA------------------------ 532
consensus_10549#1      TGAATACCTTGGTGAAGAATATCCGGAAGT-ACTTGGAAGTATTTTGGGTGCCCTTAAGG 868
                         * *       *     *                                         

consensus_10549#0      AACAAGATCACACTTATATCAGACATGAATTGTCTTATATTTTGTGAAAATGTATTTGTC 943
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      ------------------------------------------------------------
consensus_10549#1      CTATTGTAAATGTAATTGGTATGACCAAAATGACTCCTCCAATTAAAGAACTTCTGCCGA 928
                                                                                   

consensus_10549#0      AGTATTTTCAATCCTATTTACTTCTTATTTTCGTTCCCAAACCTTTATGTTTTGTTACTA 1003
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      ------------------------------------------------------------
consensus_10549#1      GATTGACACCAATATTGAAAAACAGGCACGAAAAAGTCGAAGAGAACTGTATCGATCTTG 988
                                                                                   

consensus_10549#0      CTGAATTATTGTCCTTCAAATAAGTTCCTGATATCAGGATCTATTTACTCCTGAGGTTTT 1063
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      ------------------------------------------------------------
consensus_10549#1      TTGGACGAATAGCAGACCGTGGATCAGAGTATGTCTCTTCTAGAGAATGGATGCGTATCT 1048
                                                                                   

consensus_10549#0      ACACATTATCGTGGTCTTGTATTTAAACTAACTTTTCGGATTAATAAATCAGTTTAATTG 1123
consensus_10549#3      ------------------------------------------------------------
consensus_10549#2      ------------------------------------------------------------
consensus_10549#1      GCTTTGAACTCTTGGAATTATTAAAAGCGCATAAAAAAT--------------------- 1087
                                                                                   

consensus_10549#0      GAAAAAAAAAAAAAAAAAA 1142
consensus_10549#3      -------------------
consensus_10549#2      -------------------
consensus_10549#1      -------------------
                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)