These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1099 fasta sequence [TTTTTTTTTTTTTTTTTTAA------AAAAAATTCCTTCATTTATATAACACAACTTGCTACTGATACAAATGGAAATGTAACAGTCCAAGAATAGTTTTATTTTTCCGCCAAAGAGATTTGTACTTTCACTGAGAGTGAAATTAGATTTATTTTTATGACAACATCTCTTCCATAATGATGTATTGTTTTTTTGTTCAAAATCTAGAC-AGAAATATATTCAAATATAAAGTTGATAAGATCACTACGCGAGTTCAACACATGGTGTTAAAGTATATTCCGGTTTAACCTTGAAGGGAGGACCATAAGCAGGAACTA-CCCAATCAGCTC-GTTCCAAAATTAACATACGGCTTTGACGCCAAATATTGATCAAATTTTCTTTGTCACAGTTACTTTCTGTCTAATTCCCTTCCATTATGTCAAGAAAGCTTACACGACTAGCATCTTGAACATCCATCAACAAGTCCCCAGGAACAGCTATACAACATGATTCACGACACTCACCCGTCTTTAACTCTATGAGACGACCATTTACTACCAAACTGACTTGTGCACCTCTCCGACCAGGAGTTCCGATAACACAAAAATTTTCATCAAATTCATACGGTGTTATTCCACAAGCAAAATCATGCTCCAAGAACTTGTCGCCTCGCGTTTGTATGTCGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCATGGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTAATTATAAGATTTTCGGTCAAAATTAGGATGAACTTGCAGTGTGTGAATACAGAATCGGTTTTGACTCAAACACCCAAAATATTGAGCGACCAGACGTATAACGGAGGGTAAGAAGGGAGACCGGATTGC] [+] EMBL AI394914 [TTTTTTTTTTTTTTTTTTAAAACTAGAAAAAATTCCTTCAGTTATGTAACACAACTTGCTACTGATACAAATGGAAATGTAACAGTCCAAGAATAGTTTTATTTTTCCGCCAAAGAGATTTGTACTTTCACTGAGAGTGAAATTAGATTTATTTTTATGACAACATCTCTTCCATAATGATGTATTGTTTTTTTGTTCAAAATCTAGACAAGAATTA AATCAAATt ] [+] EMBL AI394949 [TTTTTTTTTTTTTTTTTTAAAACTAGAAAAAATTCCTTCATTTATATAACACAACTTGCTACTGATACAAATGGAAATGTAACAGTCCAAGAATAGTTTTATTTTTCCGCCAAAGAGATTTGTACTTTCACTGAGAGTGAAATTAGATTTATTTTTATGACAACATCTCTTCCACAATGATGTATTGTTTTTTTGTTCAAAATCTATAC AGAAATATATTCAAATATAAAGTTGATAAGATCACTACGCGAGTTCAACACATGGTGTTAAAGTATATTCCGGTTTAACCTTGAAGGGAGGACCATAAGCAGGAA TAGCCCAATCAGCTCGGTTCCAAAATTAACATACCGGTTTGAtc ] [+] EMBL AI395580 [ TTTTTTTTTTTTAA AAAAAATTCCTTCATTTATATAACACAACTTGCTACTGATACAAATGGAAATGTAACAGTCCAAGAATAGTTTTATTTTTCCGCCAAAGAGATTTGTACTTTCACTGAGAGTGAAATTAGATTTATTTTTATGACAACATCTCTTCCATAATGATGTATTGTTTTTTTGTTCAAAATCTAGAC AGAAATATATTCAAATATAATGTTGATAAGATCACTACGCGAGTTCAACACATGGTGTTAAAGTATATTCCGGTTTAACCTTGAAGGGAGGACCATAAGCAGGAACTA CCCAATCAGCTC GTTCCAAAATTAACATACGGGTTTGA ] [+] EMBL CD161438 [ CACAACTTGCTACTGATACAAATGGAAATGTAACAGTCCAAGAATAGTTTTATTTTTCCGCCAAAGAGATTTGTACTTTCACTGAGAGTGAAATTAGATTTATTTTTATGACAACATCTCTTCCATAATGATGTATCGTTTTTTTGTTCAAAATCTAGAC AGAAATATATTCAAATATAAAGTTGATAAGATCACTACGCGAGTTCAACACATGGTGTTAAAGCATATTCC ] [-] EMBL CD146448 [ ACAACTTGCTACTGATACAAATGGAAATGTAACAGTCCAAGAATAGTTTTATTTTTCCGCCAAAGAGATTTGTACTTTCACTGAGAGTGAAATTAGATTTATTTTTATGACAACATCTCTTCCATAATGATGTATTGTTTTTTTGTTCAAAATCTAGAC AGAAATATATTCAAATATAAAGTTGATAAGATCACTACGCGAGTTCAACACATGGTGTTAAAGTATATTCCGGTTTAACCTTGAAGGGAGGACCATAAGCAGGAACTA CCCAATCAGCTC GTTCCAAAATTAACATACGGCTTTGACGCCAAATATTGATCAA ] [+] EMBL CD185351 [ AGATTTGTACTTTCACTGAGAGTGAAATTAGATTTATTTTTATGACAACATCTCTTCCATAATGATGTATTGTTTTTTTGTTCAAAATCTAGAC AGAAATATATTCAAATATAAAGTTGATAAGATCACTACGCGAGTTCAACACATGGTGTTAAAGTATATTCCGGTTTAACCTTGAAGGGAGGACCATAAGCAGGAACTA CCCAATCAGCTC GTTCCAAAATTAACATACGGCTTTGACGCCAAATATTGATCAAATTTTCTTTGTCACAGTTACTTTCTGTCTA ] [+] EMBL CD148828 [ CATACGGCTTTGACGCCAAATATTGATCAAATTTTCTTTGTCACAGTTACTTTCTCCATGATTCCCTTCCATTATGTCAAGAAAGCTTACACGACTAGCATCTTGAACATCCATCAACAAGTCCCCAGGAACAGCTATACAACATGATTCACGACA ] [+] EMBL CD193253 [ AGAAAGCTTACACGACTAGCATCTTGAACATCCATAAACAAGTTCCCAGTAACAGCTATACAACATGATTCACGACACTCACCCGTCTTTAACTCTATGAGACGACCATTTACTACCAAACTGACTTGTGCACCTCTCCGACCAGGAGTTCCGATAACACAAAAATTTTCATCAAATTCATACGGTGTTATTCCACAAGCAAAATCATGCTCCAAGAACTTGTCGCCTCGCGTTTGTATGTCGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCATGGAGCANAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTAATTATAAGATTTTCCGTCAAAATTANGATGAACTTGCAGTGTGTGAATACAGAATCGGTTTTGACTCANACACCCANAATATTGAGCGACCAGACGTATA ] [-] EMBL AI977409 [ ATTCATACGGTGTTATTCCGCAAGCANAATCATGCTCCAAGAACTTGTCGCCTCGCGTTTGTATGTCGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCATGGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTAATTATAAGATTTTCGGTCAAAATTAGGATGAACTTGCAGTGTGTGAATACAGAATCGGTTTTGACTCAAACACCCAAAATATTGAGCGACCAGACGTATAACGGAGGGTAAGAAGGGAGACCGGATTG ] [-] EMBL AI067376 [ TCCAAGAACTTGTCGCTTCGCGTTTGTATGTCGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCATGGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTAATTATAAGACTTTCGGTCAAAATTAGGATGAACTTGCAGTGTGTGAATACAGAATCGGTTTTGACTCAAACACCCAAAATATTGAGCGACCAGACGTATAACGGAGGGTAAGAAGGGAGACCG ] [-] EMBL AI067859 [ GTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCATGGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTAATTATAAGACTTTCGGTCAAAATTAGGATGAACTTGCAGTGTGTGAATACAGAATCGGTTTTGACTCAAACACCCAAAATATTGAGCGACCAGACGTATAACGGAGGGTAAGAAGGGAGACCG ] [-] EMBL AI067785 [ GTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCATGGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTAATTATAAGACTTTCGGTCAAAATTAGGATGAACTTGCAGTGTGTGAATACAGAATCGGTTTTGACTCAAACACCCAAAATATTGAGCGACCAGACGTATAACGGAGGGTAAGAAGGGAGACCGGATTGC] [+] EMBL CD141400 [ AACTTCCTTCATGGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTAATTATAAGATTTTCGGTCAAAATTAGGATGAACTTGCAGTGTGTGAATACAGAATCGGTTTTGACTCAAACACCCAAAATATTGAGCGACCAGACGTATAACGGAGGGTAAGAAGGGAG ] consensusID : consensus_10576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 554 fasta sequence [GGACATCCATAAACAAGTTCCCAGTAACAGCTATACAACATGATTCACGACACTCACCCGTCTTTAACTCTATGAGACGACCATTTACTACCAAACTGACTTGTGCACCTCTCCGACCAGGAGTTCCGATAACACAAAAATTTTCATCAAATTCATACGGTGTTATTCCACAAGCAAAATCATGCTCCAAGAACTTGTCGCCTCGCGTTTGTATGTCGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCAT-GGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTCCTCGTGCGATTCTGCCTCGGAGGC] [-] EMBL CD083582 [GGACATCCATAAACAAGTTCCCAGTAACAGCTATACAACATGATTCACGACACTCACCCGTCTTTAACTCTATGAGACGACCATTTACTACCAAACTGACTTGTGCACCTCTCCGACCAGGAGTTCCGATAACACAAAAATTTTCATCAAATTCATACGGTGTTATTCCACAAGCAAAATCATGCTCCAAGAACTTGTCGCCTCGCGTTTGTATGTCGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCAT GGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACGTGAGAATTTTCCTCGTGCGATTCTGCCTCGGAGGC] [-] EMBL CD166677 [ cACTACCAAACTGACTTGTGCACCTCTCCGACCAGGAGTTCCGATAACACAAAAATTTTCATCAAATTCATACGGTGTTATTCCACAAGCAAAATCATGCTCCAAGAACTTGTCGCCTCGCGTTTGTATGTCGTATCCAACAATCATTATGTCGGCACAATTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTATCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCACCTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTGCATAACTTCCTTCATGGGAGC ] [+] EMBL CD125329 [ CTACCAAACTGACTTGTGCACCTCTCCGACCAGGAGTTCCGATAACACAAAAATTTTCATCAAATTCATACGGTGTTATTCCACAAGCAAAATCATGCTCCAAGAACTTGTCGCCTCGCGTTTGTATGTCGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGC ] consensusID : consensus_10576#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 223 fasta sequence [AGATCGCTCTTCGCTCCAAGAACTTGTCGCCTCGCTGTTTGTATGT-CGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCGTTCCAAACAGACCCAGGGTTACCACATA] [+] EMBL CD111633 [AGATCGCTCTTCGCTCCAAGAACTTGTCGCCTCGCTGTTTGTATGT CGTATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCGTTCCAAACAGACCCAGGGTTACCACAT ] [+] EMBL CD111658 [ TTCGCTCCAAGAACTTGGCGCCTCG TGTTTGTATGTGCG ATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCATGACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTTTGAGGGATGATAACAACTCAGGGCCGTTCCAAACAGACCCAGGGTTACCACATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10576#0 TTTTTTTTTTTTTTTTTTAAAAAAAATTCCTTCATTTATATAACACAACTTGCTACTGAT 60 consensus_10576#1 ------------------------------------------------------------ consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 ACAAATGGAAATGTAACAGTCCAAGAATAGTTTTATTTTTCCGCCAAAGAGATTTGTACT 120 consensus_10576#1 ------------------------------------------------------------ consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 TTCACTGAGAGTGAAATTAGATTTATTTTTATGACAACATCTCTTCCATAATGATGTATT 180 consensus_10576#1 ------------------------------------------------------------ consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 GTTTTTTTGTTCAAAATCTAGACAGAAATATATTCAAATATAAAGTTGATAAGATCACTA 240 consensus_10576#1 ------------------------------------------------------------ consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 CGCGAGTTCAACACATGGTGTTAAAGTATATTCCGGTTTAACCTTGAAGGGAGGACCATA 300 consensus_10576#1 ------------------------------------------------------------ consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 AGCAGGAACTACCCAATCAGCTCGTTCCAAAATTAACATACGGCTTTGACGCCAAATATT 360 consensus_10576#1 ------------------------------------------------------------ consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 GATCAAATTTTCTTTGTCACAGTTACTTTCTGTCTAATTCCCTTCCATTATGTCAAGAAA 420 consensus_10576#1 ------------------------------------------------------------ consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 GCTTACACGACTAGCATCTTGAACATCCATCAACAAGTCCCCAGGAACAGCTATACAACA 480 consensus_10576#1 --------------------GGACATCCATAAACAAGTTCCCAGTAACAGCTATACAACA 40 consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 TGATTCACGACACTCACCCGTCTTTAACTCTATGAGACGACCATTTACTACCAAACTGAC 540 consensus_10576#1 TGATTCACGACACTCACCCGTCTTTAACTCTATGAGACGACCATTTACTACCAAACTGAC 100 consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 TTGTGCACCTCTCCGACCAGGAGTTCCGATAACACAAAAATTTTCATCAAATTCATACGG 600 consensus_10576#1 TTGTGCACCTCTCCGACCAGGAGTTCCGATAACACAAAAATTTTCATCAAATTCATACGG 160 consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 TGTTATTCCACAAGCAAAATCATGCTCCAAGAACTTGTCGCCTCGC-GTTTGTATGTCGT 659 consensus_10576#1 TGTTATTCCACAAGCAAAATCATGCTCCAAGAACTTGTCGCCTCGC-GTTTGTATGTCGT 219 consensus_10576#2 -----------AGATCGCTCTTCGCTCCAAGAACTTGTCGCCTCGCTGTTTGTATGTCGT 49 * *********************** ************* consensus_10576#0 ATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCAT 719 consensus_10576#1 ATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCAT 279 consensus_10576#2 ATCCAACAATCATTATGTCGGCACAACTGAATGTACTCATACAACCAACATGTTCAGCAT 109 ************************************************************ consensus_10576#0 GACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTT 779 consensus_10576#1 GACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTT 339 consensus_10576#2 GACCATCTGTACATATGACACCTTTGATGTCCTTTTCAGGTTCGTGAATTCCCGCAGCTT 169 ************************************************************ consensus_10576#0 TGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCAC 839 consensus_10576#1 TGAGGGATGATAACAACTCAGGGCCATTCCAAACAGACCCAGGGTTTACCACATAGGCAC 399 consensus_10576#2 TGAGGGATGATAACAACTCAGGGCCGTTCCAAACAGACCCAGGGTT-ACCACATA----- 223 ************************* ******************** ******** consensus_10576#0 CTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTG 899 consensus_10576#1 CTGCTGGACCACGAATGAGTACTGTATTACACTTTCGATATACGTAGTCAGAGGATCTTG 459 consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 CATAACTTCCTTCATGGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACG 959 consensus_10576#1 CATAACTTCCTTCATGGAGCAAAAAAACTGAATAATCGTCCGTACCCATTTAAATGCACG 519 consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 TGAGAATTTTAATTATAAGATTTTCGGTCAAAATTAGGATGAACTTGCAGTGTGTGAATA 1019 consensus_10576#1 TGAGAATTTTCCTCGTGCGATTCTGCCTCGGAGGC------------------------- 554 consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 CAGAATCGGTTTTGACTCAAACACCCAAAATATTGAGCGACCAGACGTATAACGGAGGGT 1079 consensus_10576#1 ------------------------------------------------------------ consensus_10576#2 ------------------------------------------------------------ consensus_10576#0 AAGAAGGGAGACCGGATTGC 1099 consensus_10576#1 -------------------- consensus_10576#2 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||