|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1093 fasta sequence
[CTGGCTGGGATGACAGTAAACTTCGACATCTCCCATTACTTCGAGTGTCTATGATACAGGTATCACATTGTTTGGTATCACTATTCAACGAAACTACCAACAGTTCTTTCATGATTGCAGTTCTGAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGACAGAAGAAGTCTCATGCGCCGATCAGGTATCCTTTTTTTCCAAACTCACTTTCCTCATTACAAAAGAGCTGAAGGACTAGGGGCACGATAATAGCATCAGATTGTTCTAATAGCTTATCGGATAACCACGCGTAGTCGTGATTGTGCTAAATCTAGACGCCAGACACTGATCTACAATCGTAGATATGTGGTACTGGGACCCACCGCCATGCCCATTACCGGAAGCAGAATCACGGCGACGATTACGTTTACCTCCAACCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCCCTCTGCAACGACATCTCTCCACACTTTAAAGTCCTTGACATTCCATCTGGAGAACGTACAATGTGTATAACGTACTGAAATCGGATTTTACGCAGTTCCATAAGGGCGATAACGGCATAATGTAAAAAAAGTAAAGTATCGGTCAAACTGCCGGCAAAAACTACTATGGAAAGATAATCAGATTCCTTTGGTTGTATAACACGAACAGTATAAAACAACCAAAATGCAAATAAAACAACTAACACAAGACAAAGAAAAAGAGTTCGACAAAGACGGATACGTGGAAGTATGGCAGTAGTACTGCCACAAAATGGTCGACAAGGGGAGCTTAAAAACCACAGCGCGATAGCGAGGAGTACAAGTTTTACAGATATACTGATGAGATGTCCTTCACAAGTTGGTTCACAACCTTCAGTTGACCATCCAATCCAAAACGGAAAAAGTGGGAGCAAAAGCATTAGGACTGGAGACAGTAATGAACCGATTGCCAGAAATGCAGAAATGGCANAACTTAATGTATGTGAGCATTTGAACATTTTTATTTCATCCGCTTCGGATCGTATTANAGCAGCTGCAGCACCGCTA]
[+] EMBL CD061777 [CTGGCTGGGATGACAGTAAACTTCGACATCTCCCATTACTTCGAGTGTCTATGATACAGGTATCACATTGTTTGGTATCACTATTCAACGAAACTACCAACAGTTCTTTCATGATTGCAGTTCTGAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGACAGAAGAAGTCTCATGCGCCGATCAGGTATCCTTTTTTTCCAAACTCACTTTCCTCATTACAAAAGAGCTGAAGGACTAGGGGCACGATAATAGCATCAGATTGTTCTAATAGCTTATCGGATAACCACGCGTAGTCGTGATTGTGCTAAATCTAGACGCCAGACACTGATCTACAATCGTAGATATGTGGTACTGGGACCCACCGCCATGCCCATTACCGGAAGCAGAATCACGGCGACGATTACGTTTACCTCCAACCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCCCTCTGCAACGACATCTCTCCACACTTTAAAGTCCTTGACATTCCATCTGGAGAACGTACAAT ]
[+] EMBL CD122729 [ AATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCCCTCTGCAACGACATCTCTCCACACTTTAAAGTCCTTGACATTCCATCTGGAGAACGTACAATGTGTATAACGTACTGAAATCGGATTTTACGCAGTTCCATAAGGGCGATAACGGCATAATGTAAAAAAAGTAAAGTATCGGTCAAACTGCCGGCAAAAACTACTATGGAAAGATAATCAGATTCCTTTGGTTGTATAACACGAACAGTATAAAACAACCAAAATGCAAATAAAACAACTAACACAAGACAAAGAAAAAGAGTTCGACAAAGACGGATACGTGGAAGTATGGCAGTAGTACTGCCACAAAATGGTCGACAAGGGGAGCTTAAAAACCACAGCGCGATAGCGAGGAGTACAAGTTTTACAGATATACTGATGAGATGTCCTTCACAAGTTGGTTCACAACCTTCAGTTGACCATCCAATCCAAAACGGAAAAAGTGGGAGCAAAAGCATTAGGACTGGAGACAGTAATGAACCGATTGCCAGAAATGCAGAAATGGCANAACTTAATGTATGTGAGCATTTGAACATTTTTATTTCATCCGCTTCGGATCGTATTANAGCAGCTGCAGCACCGCTA]
consensusID : consensus_10593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 858 fasta sequence
[AANAATTTGGCACGAGGGCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCACAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCATCTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAG-TTTACTTTTAGCTTTATTATAATTACT-TTTCCCGTGTACCGATTTAATCGATGTTATTACCGGTTAATG-CCAATAACTTTGTTTCTTCAGTGAATTTTGATCTTTTGCTAATTGAGTTTTTATAAAATGTA]
[+] EMBL CD079621 [AANAATTTGGCACGAGGGCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCACAGTAATTNTGTTGTGCTGCCAATTNTCTCGTTNTTTTCTCTTCATCTTTNTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAGNNTTAC TTTAGCTNTATTATAATTACTNTTNCCNGTGTACCGATTNNATCGATNGTATTACCGGNTAATGCCCCAT ACTNTGNTNCTTCAGTGAATTNTG ]
[-] EMBL CD170834 [ AGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGCTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAATATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTACATTTATATGAAGTCCAGAATTCGTTTGCTTTTCGCACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGACTTTTTCTGTT ]
[-] EMBL CD073885 [ TATTAGAACCGTTGNAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCACAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCATCTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAG TTTACTTTTAGCTTTATTATAATTACT TTTCCCGTGTACCGATTTAATCGATGTTATTACCGGTTAATG CCAATAACTTTGTATCTTCAGTGAATTTTG ]
[-] EMBL CD074937 [ CTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTTTATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCCCAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCATCTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAG TTTACTTTTAGCTTTATTATAATTACT TTTCCCGTGTACCGATTTAATCGATGTTATTACCGGTTAATG CCAATAACTTTGTTTCTTCAGTGAATTTTGATCTTTTGCTAATTGAGTTTTTATAAAATGTA]
[-] EMBL CD076713 [ GATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTGTTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGTGCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAAGTTATTACTAACCACAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCATCTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAG TTTACTTTTAGCTTTATTATAATTACT TTTCCTGTGTACCGATTTAATCGATGTTATTACCGGTTAATG CCAATAACTTTGTTTCTTCAGTGAATTTTGATCTTTTGCTAATTGAGTTTTTATAAAATGTA]
consensusID : consensus_10593#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 727 fasta sequence
[ACCATCCGCTAAACTACGAGATAGAGCCCGATCAGCTACAATACTCCATACCTGCTGTCCGCCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCAGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTTTTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCAGATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCGCTCCTCGTGCCAAATTNTTGGCCTGGA]
[-] EMBL CD090651 [ACCATCCGCTAAACTACGAGATAGAGCCCGATCAGCTACAATACTCCATACCTGCTGTCCGCCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGAAGAATAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATAACTTCGtc ]
[-] EMBL CD090658 [ACCATCCGCTAAACTACGAGATAGAGCCCGATCAGCTACAATACTCCATACCTGCTGTCCGCCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGATAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTAAAAAAGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACA ]
[-] EMBL CD081114 [ CCATCCGCTAAACTACGAGATAGAGCCCGATCAGCTACAATACTCCATACCTGCTGTCCGCCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCAGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTTTTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCAGATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCGCTCCTCGTGCCAAATTNTTGGCCTGGA]
[+] EMBL CD189889 [ CCTGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACT ]
[+] EMBL CD189402 [ TGGATGCACTAATTTAGGAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGTTGATATTTAGCTCTCTTTACTGTTGCAATGGCTGATGCAGCTGCGGCTGCATCTTGTTGTGGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGAAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCAGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTNCT AACAGCCAAAAG AGTCTCATGCGCCGTTTACGT ]
[-] EMBL CD189322 [ AAAGCGTGAGGTGACAGGCCATAAGCTAAGCAAAGAGCAAGATGATCAATTACCATATCCACAGGGTGACGAGCTTGTTGACGTGTAACACGCATATACTTTTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTTGTGCTGCTTCATACGGATCCAAAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCTCCCATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCAGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTAT ]
consensusID : consensus_10593#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[CGGGCCAANAATCGGCACGAGGCCCTTTCTTGGAAAGATTTAATCCTTCGGCTGCTACACCACAACAAGATGCAGCCGCAGCTGCATCAGCCATTGCAACAGTAAAGAGAGCTAAATATCAACAGAATACCAAGCAAGTTAACACTTCAGACAGTCTAGATCCATATCCTCTACTTCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTNTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTTCA]
[+] EMBL CD083141 [CGGGCCAANAATCGGCACGAGGCCCTTTCTTGGAAAGATTTAATCCTTCGGCTGCTACACCACAACAAGATGCAGCCGCAGCTGCATCAGCCATTGCAACAGTAAAGAGAGCTAAATATCAACAGAATACCAAGCAAGTTAACACTTCAGACAGTCTAGATCCATATCCTCTACTTCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTNTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTTCA]
consensusID : consensus_10593#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[CTCGGCATTAGCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGNTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTG]
[+] EMBL CD084434 [CTCGGCATTAGCCTAAATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTCGNTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGTTGCTTTGTACTGTTAGACGCCTGCCGCTTATCTATCTTATCGAAGAAATATTAGAACCGTTGGAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAATGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCATTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACTCGATTCAGTTTTATCCGTTCGTCAATTTTTGCATTTATATGAAGTCCAGAATTCGTTTGCTTTTCACACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTG]
consensusID : consensus_10593#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[TTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCGGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTTTTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCAGATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCACTATCTACATCGTAAAATTTGTACTTGGACCCACCGCCATTCCCACTACCAGAAGCAGAACCACCGCGACGATTACGTTTACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCC]
[-] EMBL CD155308 [TTTTTGAAAGGTACCAATGTTTGATCACATTCAACAACACCAACAGTTCTTTCATTATTGCGGTTTTCAACAGCAAGGCGCTTAACATGAGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTTTTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCAGATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCACTATCTACATCGTAAAATTTGTACTTGGACCCACCGCCATTCCCACTACCAGAAGCAGAACCACCGCGACGATTACGTTTACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCACCATGTAAAACTGTAAAACTTCTATAGCTGCC]
consensusID : consensus_10593#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[TACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCCTGTAAATACACATTTTTAATAAAATGAGGTTTCATTGAGCTTAAAGCAATAACGTGATATGTAGAAGATACATCTAAAACTGTAAGCATATTTGGTGCGATATGTGCACTAAGGATGAATTTTTGAACAGAAATCCCCAATATATAATTGACGAAAAAAATACAAGAAGCAGTAATAGTTATTCGAACAAAAATATAGTTCTGATTTAGTTGAAATACTAAATAATCAGTACGGACAACAGTCCATGTTTCATTACGATATATTTAAAGTGAACCGCAAATATTTTCTTCCCAACAAAATTATCTCAGCTGTC]
[+] EMBL CD138741 [TACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCCTGTAAATACACATTTTTAATAAAATGAGGTTTCATTGAGCTTAAAGCAATAACGTGATATGTAGAAGATACATCTAAAACTGTAAGCATATTTGGTGCGATATGTGCACTAAGGATGAATTTTTGAACAGAAATCCCCAATATATAATTGACGAAAAAAATACAAGAAGCAGTAATAGTTATTCGAACAAAAATATAGTTCTGATTTAGTTGAAATACTAAATAATCAGTACGGACAACAGTCCATGTTTCATTACGATATATTTAAAGTGAACCGCAAATATTTTCTTCCCAACAAAATTATCTCAGCTGTC]
consensusID : consensus_10593#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence
[CGAAGTTATGGGATGATGTCAAAGNNNACTNGCTCTCCAGGAAAATCTTTGGATCCGTATGAAGCAGCACAAGCTGTTTTCCCTACTCTCATCCGGCCGTTACAAAAGTATATGCGTGTTACACGTCAACAAGCTCGTCACCCTGTGGATATGGTAATTGATCATCTTGCTCTTTGCTTAGCNCAAGGCCAGACACCTCACGCANACNNGGAAAG]
[+] EMBL CD090642 [CGAAGTTATGGGATGATGTCAAAGNNNACTNGCTCTCCAGGAAAATCTTTGGATCCGTATGAAGCAGCACAAGCTGTTTTCCCTACTCTCATCCGGCCGTTACAAAAGTATATGCGTGTTACACGTCAACAAGCTCGTCACCCTGTGGATATGGTAATTGATCATCTTGCTCTTTGCTTAGCNCAAGGCCAGACACCTCACGCANACNNGGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10593#1 ------------------------------------------------------------
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 CGGGCCAANAATCGGCACGAGGCCCTTTCTTGGAAAGATTTAATCCTTCGGCTGCTACAC 60
consensus_10593#0 -------------------------------CTGGCTGGGATGACAGTAAACTTCGACAT 29
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 --------------------------------------ACCATCCGCTAAACTACGAGAT 22
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 ------------------------------------------------------------
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 CACAACAAGATGCAGCCGCAGCTGCATCAGCCATTGCAACAGTAAAGAGAGCTAAATATC 120
consensus_10593#0 CTCCCATTACTTCGAGTGTCTATGATACAGGTATCACATTGTTTGGTATCACT-ATTCAA 88
consensus_10593#5 ------------------TTTTTGAA--AGGTACCAA--TGTTTG--ATCAC--ATTCAA 34
consensus_10593#2 AGAGCCCGATCAGCTACAATACTCCA-TACCTGCTGT-CCGCCTGGATGCACTAATTTAG 80
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 --------------------------------------AANAATTTGGCACGAGGGCCTA 22
consensus_10593#4 -------------------------------------------CTCGGCATTAG--CCTA 15
consensus_10593#3 AACAGAATACCAAGCAAGTTAACACTTCAGACAGTCTAGATCCATATCCTCTACTTCCTA 180
consensus_10593#0 CGAAACTACCA-ACAGTTCTTTCATGATTGCAGTTCTGAACAGCAAGGCGCTTAACATGA 147
consensus_10593#5 CAA---CACCA-ACAGTTCTTTCATTATTGCGGTTTTCAACAGCAAGGCGCTTAACATGA 90
consensus_10593#2 GAAGTAGAGGATATGGATCTAGACTGTCTGAAGTGTTAACTTGCTTGGTATTCTGT-TGA 139
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 AATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTC 82
consensus_10593#4 AATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTC 75
consensus_10593#3 AATTAGTGCATCCAGGCGGACAGCAGGTATGGAGTATTGTAGCTGATCGGGCTCTATCTC 240
consensus_10593#0 GTAAAAGCCTCCTCAACAGACAGAAGAAGTCTCATGC-GCCGATCAGGTATCCTTTTTTT 206
consensus_10593#5 GTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGC-GCCGTTTACGTATCCTTTTTTC 149
consensus_10593#2 TATTTAGCTCTCTTTACTGTTGCAA--TGGCTGATGCAGCTGCGGCTGCATCTTGTTGT- 196
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 --TACCTCCACCCCCGCTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCCTGTAAATA 58
consensus_10593#1 GT-AGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGT-TGCT 140
consensus_10593#4 GNTAGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGT-TGCT 134
consensus_10593#3 GT-AGTTTAGCGGATGGTGCCATATTTCAGCTTCGTCGTGGAAATGAGCTGTCGT-TGCT 298
consensus_10593#0 CCAAACTCACTTTCCTCATTACAAAAGAGCTGAAGGACTAGGGGCACGATAATAG-CATC 265
consensus_10593#5 C--AACTCAATTTCCTCAT-ACAAACGAACTGAAGCACTAGGGGCA--GTAATAG-CACC 203
consensus_10593#2 ---GGTGTAGCAGCCGAAGGATTAAATCTTTCCAAGA--AAGCGTGAGGTGACAGGCCAT 251
consensus_10593#7 -CGAAGTTATGGGATGATGTCAAAGNNNACTNGCTCTCCAGGAAAATCTTTGGATCCGTA 59
consensus_10593#6 C---ACATTTTTAATAAAATGAGGTTTCATTGAGCTTAAAGCAATAACGTGATATGTAGA 115
*
consensus_10593#1 TTGTACTGTTAGACGCCTGCCGCTTATCTATCTT--ATCGAAGAAATATTAGAACCGTTG 198
consensus_10593#4 TTGTACTGTTAGACGCCTGCCGCTTATCTATCTT--ATCGAAGAAATATTAGAACCGTTG 192
consensus_10593#3 TTGTACTGTTAGACGCCTGCCGCTTATCTATCTT--ATCGAAGAAATATTAGAACCGTTG 356
consensus_10593#0 AGATTGTTCTAATAGCTTATCGGATAACCACGCGTAGTCGTGATTGTGCTAAATCTA--G 323
consensus_10593#5 AGATTGCTC-AACAGTATAC---GTAACACCGTT---TTCTGATTTTCCTAAACC----- 251
consensus_10593#2 AAGCTAAGCAAAGAGCAAGATGATCAATTACCAT--ATCCACAGGGTGACGAGCTTGTTG 309
consensus_10593#7 TGAAGCAGCACAAGCTGTTTTCCCTACTCTCATCCGGCCGTTACAAAAGTATATGCGT-- 117
consensus_10593#6 AGATACATCTAAAACTGTAAGCATATTTGGTGCGATATGTGCACTAAGGATGAATTTTTG 175
consensus_10593#1 GAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAA 258
consensus_10593#4 GAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAA 252
consensus_10593#3 GAGGCAGGTAGATTTGTTTTACGAACTGACAATGCAGTATGACCTTTTAAGGAACTTCAA 416
consensus_10593#0 ACGCCAGACA---CTGATCTACAA-TCGTAGATATG---TGGTACTGGGACCCACCGCCA 376
consensus_10593#5 AGCCCCACCA---CT-ATCTACA--TCGTAAA-AT----TTGTACTTGGACCCACCGCCA 300
consensus_10593#2 ACGTGTAACA---CGCATATACTT-TTGTAACGGCCGGATGAGAGTAGGGAAAACAGCTT 365
consensus_10593#7 GTTACACGTCAACAAGCTCGTCACCCTGTGGATA-----TGGTAATTGA--TCATCTTGC 170
consensus_10593#6 AACAGAAATC--CCCAATATATAATTGACGAA--------AAAAATACAAGAAGCAGTAA 225
* *
consensus_10593#1 TGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCA 318
consensus_10593#4 TGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCA 312
consensus_10593#3 TGTTCAGGGAATGTGATCTCATCCATTTCATTTTCTTTTTTAAACCGATTTCGATTCGCA 476
consensus_10593#0 TGCCCATTAC---CGGAAGCA--GA-ATCACGGCGACGATTACGTTTACCTCCAACCCCG 430
consensus_10593#5 TTCCCACTAC---CAGAAGCA--GA-ACCACCGCGACGATTACGTTTACCTCCACCCCCG 354
consensus_10593#2 GTGCTGCTTCATACGGATCCA--AAGATTTTCCTGGAGAGCAAGTAAACTTTGACATCCT 423
consensus_10593#7 TCTTTGCTTAGCNCAAGGCCAGACACCTCACGCANACNNGGAAAG--------------- 215
consensus_10593#6 TAGTTATTCGA-ACAAAAATATAGTTCTGATTTAGTTGAAATACTAAATAATCAGTACGG 284
*
consensus_10593#1 TTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACT--CGATTCAGTTTT 376
consensus_10593#4 TTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACT--CGATTCAGTTTT 370
consensus_10593#3 TTTCTAGATATGAACCGGTATTGAATAGTATGTTGATTACATTACT--CGATTCAGTTNT 534
consensus_10593#0 CTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCA--CCATGTAAAACT 488
consensus_10593#5 CTGCTGAAAGATGAGTTTTGATTTGGGTTGTAAGCTGTGAATTCCA--CCATGTAAAACT 412
consensus_10593#2 CC-CATTACTTCGAGTGTTTTTGAAAGGTACCAATGTTTGATCACA--TTCAACAACACC 480
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 --ACAACAGTCCATGTTTCATTACGATATATTTAAAGTGAACCGCAAATATTTTCTTCCC 342
consensus_10593#1 ATCCGTTCGTCAATTTTTGCATTTATATGAAGTC-----CAGAATTCGTTTGCTTTTCAC 431
consensus_10593#4 ATCCGTTCGTCAATTTTTGCATTTATATGAAGTC-----CAGAATTCGTTTGCTTTTCAC 425
consensus_10593#3 ATCCGTTCGTCAATTTTTGCATTTATATGAAGTC-----CAGAATTCGTTTGCTTTTT-C 588
consensus_10593#0 G-TAAAACTTCTATAGCTGCCCTCTGCAACGACATCTCTCCACACTTTAAAGTCCTTGAC 547
consensus_10593#5 G-TAAAACTTCTATAGCTGCC--------------------------------------- 432
consensus_10593#2 AACAGTTCTTTCATTATTGCAGTTTTCAACAGCA---------------AGGCGCTTAAC 525
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 AACAAAATTATCTCAGCTGTC--------------------------------------- 363
consensus_10593#1 ACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTGATTTTTTCTG 491
consensus_10593#4 ACAAGTTATTGTTTTAGGTCAGTCTTACATTATTGTTTGTATTGCATTTG---------- 475
consensus_10593#3 A----------------------------------------------------------- 589
consensus_10593#0 ATTCCATCTGGAGAACGTACAATGTGTATAACGTACTGAAATCGGATTTTACGCAGTTCC 607
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 ATG--AGTAAAAGCCTCCTCAACAGCCAAAAGAAGTCTCATGCGCCGTTTACGTATCCTT 583
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 TTTTTGCTTTGTGTTTTATGGGGCTGCTTTGTGTACGTTGATCTTTTAAAGTTTACAAGT 551
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 ------------------------------------------------------------
consensus_10593#0 ATAAGGGCGATAACGGCATAATGTAAAAAAAGTAAAGTATCGGTCAAACTGCCGGCAAAA 667
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 TTTTCCAACTCAATTTCCTCATACAAACGAACTGAAGCACTAGGGGCAGTAATAGCACCA 643
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 GCTTTTCTTTATTTATTTTCAATAATTAACTACTAGTCATTATAAAAATCTTTATCACAA 611
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 ------------------------------------------------------------
consensus_10593#0 ACTACTATGGAAAGATAATCAGATTCCTTTGGTTGTATAACACGAACAGTATAAAACAAC 727
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 GATTGCTCAACAGTATACGTAACACCGTTTTCTGATTTTCCTAAACCAGCCCCACCGCTC 703
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 GTTATTACTAACCACAGTAATTTTGTTGTGCTGCCAATTTTCTCGTTTTTTTCTCTTCAT 671
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 ------------------------------------------------------------
consensus_10593#0 CAAAATGCAAATAAAACAACTAACACAAGACAAAGAAAAAGAGTTCGACAAAGACGGATA 787
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 CTCGTGCCAAATTNTTGGCCTGGA------------------------------------ 727
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 CTTTTTCTTGCATTTCAAGTTTCCACTTGTCATTTCCTAAGGAGTCATGTATCAAGTTTA 731
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 ------------------------------------------------------------
consensus_10593#0 CGTGGAAGTATGGCAGTAGTACTGCCACAAAATGGTCGACAAGGGGAGCTTAAAAACCAC 847
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 ------------------------------------------------------------
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 CTTTTAGCTTTATTATAATTACTTTTCCCGTGTACCGATTTAATCGATGTTATTACCGGT 791
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 ------------------------------------------------------------
consensus_10593#0 AGCGCGATAGCGAGGAGTACAAGTTTTACAGATATACTGATGAGATGTCCTTCACAAGTT 907
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 ------------------------------------------------------------
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 TAATGCCAATAACTTTGTTTCTTCAGTGAATTTTGATCTTTTGCTAATTGAGTTTTTATA 851
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 ------------------------------------------------------------
consensus_10593#0 GGTTCACAACCTTCAGTTGACCATCCAATCCAAAACGGAAAAAGTGGGAGCAAAAGCATT 967
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 ------------------------------------------------------------
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 AAATGTA----------------------------------------------------- 858
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 ------------------------------------------------------------
consensus_10593#0 AGGACTGGAGACAGTAATGAACCGATTGCCAGAAATGCAGAAATGGCANAACTTAATGTA 1027
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 ------------------------------------------------------------
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 ------------------------------------------------------------
consensus_10593#4 ------------------------------------------------------------
consensus_10593#3 ------------------------------------------------------------
consensus_10593#0 TGTGAGCATTTGAACATTTTTATTTCATCCGCTTCGGATCGTATTANAGCAGCTGCAGCA 1087
consensus_10593#5 ------------------------------------------------------------
consensus_10593#2 ------------------------------------------------------------
consensus_10593#7 ------------------------------------------------------------
consensus_10593#6 ------------------------------------------------------------
consensus_10593#1 ------
consensus_10593#4 ------
consensus_10593#3 ------
consensus_10593#0 CCGCTA 1093
consensus_10593#5 ------
consensus_10593#2 ------
consensus_10593#7 ------
consensus_10593#6 ------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||