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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 644 fasta sequence
[GGGCCAGAATTCGGCACGAGGAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAGTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCTGGATTTNTTGAAAAAAAAAAAAA]
[+] EMBL CD079919 [GGGCCAGAATTCGGCACGAGGAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAGTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGnct ]
[-] EMBL CD074116 [ CTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCTG ]
[-] EMBL AI395656 [ CTAAGGGAG ATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTTTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCTGGATTTNTTGAAAAAAAAAAAAA]
consensusID : consensus_10603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 623 fasta sequence
[TTGAAGGTCACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG-TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA-TGAAAAAGGTGTAACGGCCTACCTG-AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCT-ANAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCTAAAA]
[+] EMBL AW017444 [TTGAAGGTCACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATAC ]
[+] EMBL CD078456 [ GTCACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCT ANAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAATGTTGCT ]
[-] EMBL CD128163 [ ACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGT ]
[+] EMBL AI110959 [ CGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACNAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTA ]
[+] EMBL AI111060 [ CGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACNAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTNTCGTTCGTCTTCAATCACAAANATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTGAAGATCTTTG ]
[+] EMBL AI111051 [ CGCGATGAACTGGGCCTTGGTTAGTTNCCTGAGCGTGTTTGTAAAGCTNGCCCTTTCTTGTGACNAGTTTGACNTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCNCTNAAACCGTNATTTT ]
[+] EMBL AI110947 [ CGCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACNAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATC ]
[+] EMBL AI976581 [ GCGATGAACTGGGCCTTGGTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGCTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTTAACCAGCTGC ]
[+] EMBL SMAA28864 [ GTTAGTTTCCTGAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGACG AGTTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTGTAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGCTCGTCATATTG AACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCCTAAGGGAGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG ATATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTC ]
[-] EMBL CD147978 [ GAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCG ]
[-] EMBL CD147989 [ GAGCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAGCAG TTCTTTCCACTGAAACCGTAATTTTGATCG ]
[+] EMBL SMAA69231 [ GCGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTCTTCAAGCGAAG AG TTCTTTGCACTGAAACCGTAATTTTCAANGAAGGCGAAG CAAGT ]
[-] EMBL AI395457 [ GTCATATTGAAACTG CCATTTTCAAGT TTGTTCGTCTTCAATCACAAAGAT TGCCTAAGGGAGAA ATGTTGTCCGGTTTTATAATTGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTTTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAAACTTTCGTTCATAAAaaaaaaaaaaa]
[+] EMBL BG932562 [ AGAATATGTTGTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTTTCCT ]
[-] EMBL CD116643 [ GTCCGGTTTTATAA TGAAAAAGGTGTAACGGCCTACCTG AGATCTTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAAAGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTTAATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAAGTATTTCACTATACATGTACATTGTTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10603#0 GGGCCAGAATTCGGCACGAG-GAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAG 59
consensus_10603#1 --TTGAAGGTCACGTACACGTAAACACCGCGATGAACTGGGCCTTGGTTAGTTTCCTGAG 58
* * * ** * **************************************
consensus_10603#0 CGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTC 119
consensus_10603#1 CGTGTTTGTAAAGCTTGCCCTTTCTTGTGACGAGTTTGACGTTAGGCCGGTTACCTATTC 118
************************************************************
consensus_10603#0 TTCAAGCGAAGCAGTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTG 179
consensus_10603#1 TTCAAGCGAAGCAGTTCTTTCCACTGAAACCGTAATTTTGATCGAAGGTGAAGCCAAGTG 178
************************************************************
consensus_10603#0 TAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGC 239
consensus_10603#1 TAAAGGAAAGGGATCATCAAGTCTGTACGCTGAGTTAAATGGAGTTCTTCAACCAGTTGC 238
************************************************************
consensus_10603#0 TCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCC 299
consensus_10603#1 TCGTCATATTGAAACTGACCATTTTCAAGTATCGTTCGTCTTCAATCACAAAGATGTGCC 298
************************************************************
consensus_10603#0 TAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATC 359
consensus_10603#1 TAAGGGAGAATATGTTGTCCGGTTTTATAATGAAAAAGGTGTAACGGCCTACCTGAGATC 358
************************************************************
consensus_10603#0 TTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAA 419
consensus_10603#1 TTTGAAAGGTGGTTTTGTATCTGACGTACCTCCTGTCTTCACAGTCACCGTCCGACATAA 418
************************************************************
consensus_10603#0 AGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTT 479
consensus_10603#1 AGGAGTCTCATTCAAGCCTGTTGTTTATTCCGAAACAGTGGCACTATTAACGATTATGTT 478
************************************************************
consensus_10603#0 AATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAA 539
consensus_10603#1 AATAGCATTTGGAGCTATAATTACGAAAAACAAGTTCTAGAGTTATTTTCGACACATGAA 538
************************************************************
consensus_10603#0 GTATTTCACTATACATGTACATTGTTTTCCTCCCTAAAAGCCTTTGTATAGTACTTATAA 599
consensus_10603#1 GTATTTCACTATACATGTACATTGTTTTCCTCCCTANA-GCCTTTGTATAGTACTTATAA 597
************************************ * *********************
consensus_10603#0 ACTTTCGTTCATAAATGTTGCTGGATTTNTTGAAAAAAAAAAAAA 644
consensus_10603#1 ACTTTCGTTCATAAATGTTGCTAAAA------------------- 623
********************** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||