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Schistosoma mansoni
cluster # 10615 cluster # 10615       Sequences # 19       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10615#0 length = 1011 sequences # 3  
consensus_10615#1 length = 641 sequences # 10  
consensus_10615#2 length = 491 sequences # 4  
consensus_10615#3 length = 273 sequences # 1  
consensus_10615#4 length = 180 sequences # 1  

consensusID : consensus_10615#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1011
fasta sequence
                              [TTGCACCCGCTGTAGATTGGATGGAATGCATACAACTGAAGGTGTTATTGTATTTGGAGCGACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAGACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATACATTGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGCCTGGTGTCCTGGAATGTCTGGAGCCGATATTACACGTCTATGTAATGAAGCTGCTTTGTCTGCTGCTCGAAGAGATGATGAAGTTGTTGGTGTTACTAAAGCTGATTTTGAAGCAGCATTTGAAAGAATTTTAGCAGGCGCTGCAAAACGTTCAAATCCACTTACGGTTGCTGAACGCCACATGTCTGCTGTCCATGAATCTGGGAGGGCTCTTGTAGCATGGCTTCTTTCAAATAGTGGAATACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGCTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAANTAATTAGCNAAGAAAGCAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCCGTCTCTGTGAAGCCGTTCTGTCAANAACGGAAGCATCATGGAATAGAAGCACCNANNCTGTACTCAGCATTTCACGTCTGTAAAAATGTTGAGGAGATAGGACNNACTGTACGCTTATGATGCTCTGTAANGATGNNAGTCTANTACGAGATCTGAGAACTTTAGTGATACCCACGTCACAAATNAACCNGACTAAGGACTTTGTGAAATCTCCATTTCGGNTTAAG]

[+] EMBL CD073971             [TTGCACCCGCTGTAGATTGGATGGAATGCATACAACTGAAGGTGTTATTGTATTTGGAGCGACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAGACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATACATTGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGCCTGGTGTCCTGGAATGTCTGGAGCCGATATTGCACGTCTATGTAATGAAGCTGCTTTGTCTGCTGCTCGAAGAGATGATGAAGTTGTTGGTGTTACTAAAGCTGATTTTGAAGCAGCATTTGAAAGAATTTTAGCAGGCGCTGCAAAACGTTCAAATCCACTTACGGTTGCTGAACGCCACATGTCTGCTGTCCATGAATCTGGGAGGGCTCTTGTAGCATGGCTTCTTTCAAATAGTGGAATACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGCTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAANTAATTAGCNAAGAAAGCAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCCGTCTCTGTGAAGCCGTTCTGTCAANAACGGAAGCATCATGGAATAGAAGCACCNANNCTGTACTCAGCATTTCACGTCTGTAAAAATGTTGAGGAGATAGGACNNACTGTACGCTTATGATGCTCTGTAANGATGNNAGTCTANTACGAGATCTGAGAACTTTAGTGATACCCACGTCACAAATNAACCNGACTAAGGACTTTGTGAAATCTCCATTTCGGNTTAAG]
[-] EMBL CD091017             [                                                                                                              TTGACAGACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATACATTGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGCCTGGTGTCCTGGAATGTCTGGAGCCGATATTACACGTCTATGTAATGAAGCTGCTTTGTCTGCTGCTCGAAGAGATGATGAAGTTGTTGGTGTTACTAAAGCTGATTTTGAAGCAGCATTTGAAAGAATTTTAGCAGGCGCTGCAAAACGTTCAAATCCACTTACGGTTGCTGAACGCCACATGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD090991             [                                                                                                              TTGACAGACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATACATTGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGCCTGGTGTCCTGGAATGTCTGGAGCCGATATTACACGTCTATGTAATGAAGCTGCTTTGTCTGCTGCTCGAAGAGATGATGAAGTTGTTGGTGTTACTAAAGCTGATTTTGAAGCAGCATTTGAAAGAATTTTAGCAGGCGCTGCAAAACGTTCAAATCCACTTACGGTTGCTAAACGCCACATGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_10615#0 TTGCACCCGCTGTAGATTGGATGGAATGCATACAACTGAAGGTGTTATTGTATTTGGAGC GACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAGACA TATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATACATTGC TCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGCCTG GTGTCCTGGAATGTCTGGAGCCGATATTACACGTCTATGTAATGAAGCTGCTTTGTCTGC TGCTCGAAGAGATGATGAAGTTGTTGGTGTTACTAAAGCTGATTTTGAAGCAGCATTTGA AAGAATTTTAGCAGGCGCTGCAAAACGTTCAAATCCACTTACGGTTGCTGAACGCCACAT GTCTGCTGTCCATGAATCTGGGAGGGCTCTTGTAGCATGGCTTCTTTCAAATAGTGGAAT ACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGA TCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGC TGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAAT TTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAANTAATTAGCNAAGAAAGCAGTACG TCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGG ACCCGTCTCTGTGAAGCCGTTCTGTCAANAACGGAAGCATCATGGAATAGAAGCACCNAN NCTGTACTCAGCATTTCACGTCTGTAAAAATGTTGAGGAGATAGGACNNACTGTACGCTT ATGATGCTCTGTAANGATGNNAGTCTANTACGAGATCTGAGAACTTTAGTGATACCCACG TCACAAATNAACCNGACTAAGGACTTTGTGAAATCTCCATTTCGGNTTAAG



consensusID : consensus_10615#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 641
fasta sequence
                              [TGTCTGCTGTCCATGAATCTGGGAGGGC-TCTTGTAGCATGGCTTCTTTCAAATAGTGGAATACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGCTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC-AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTAGACCTCGACTATAATGTACTTTTGTTGTAATTCCTTCCATTTTTCGTGTATATAAAGATCGT]

[-] EMBL CD079713             [TGTCTGCTGTCCATGAATCTGGGAGGGC TCTTGTAGCATGGCTTCTTTCAAATAGTGGAATACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGCTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTAGACCTCGACTATAATGTACTTTTGTTGTAATTCCTTCCATTTTTCGTGTATATAAAGATCGT]
[-] EMBL CD163233             [             TGAATCTGGG GGGCTTCTTGTAGCATGGCTTCTTTCAAATAGTGGAATACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGCTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTA                                                                                                                                                                                          ]
[+] EMBL CD178298             [               gagaTGGAAGGGC TCTTGTAGCATGGCTTCTTTCAAATAGTGGAATACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGCTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTAGACCTCGACTATAATGTACTTT                                        ]
[-] EMBL CD179182             [                                   AGCATGGCTTCTTTCAAATAGTGGAATACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGCTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTAGACCTCGACTATAATGTACTTTT                                       ]
[-] EMBL CD179105             [                                     CATGGCTTCTTTCANATAGTGGAATACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGCTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTAGACCTCGACTATAATGTACTTTT                                       ]
[+] EMBL CD136340             [                                                                                                                                                                                                                                    GTATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAAC                                                                                                                                                               ]
[-] EMBL CD126146             [                                                                                                                                                                                                                                           ATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCT AGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGAC ACCTGT  GCGCTTAT                                                                                                                                                 ]
[-] EMBL BG931538             [                                                                                                                                                                                                                                                                                     ATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGTCCGTTCTCTGTGAAGCCGTTCTGTCAAAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGAc                                                                                    ]
[+] EMBL CD091449             [                                                                                                                                                                                                                                                                                                           ACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTAGACCTCGACTATAATGTACTTT                                        ]
[-] EMBL CD091366             [                                                                                                                                                                                                                                                                                                            CGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGTTCTGTC AAAAAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTAGACCTCGACTATAATGTACTTTT                                       ]


>consensus_10615#1 TGTCTGCTGTCCATGAATCTGGGAGGGCTCTTGTAGCATGGCTTCTTTCAAATAGTGGAA TACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAG ATCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAG CTGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAA TTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTAC GTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAGTTTTGACGAAGAGTCATCCAGTG GACCGTTCTCTGTGAAGCCGTTCTGTCAAAAAACGGAAGCCATCATGGAAATAGAAGCCA ACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACA ACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAGTTCTCAGTTACGATGATCTGA AGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTAGACCTCGACTATAATGTACTT TTGTTGTAATTCCTTCCATTTTTCGTGTATATAAAGATCGT



consensusID : consensus_10615#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 491
fasta sequence
                              [AAAAACTTTGCTTGTTAAAGCATTGGCCAATGAAGCGGAAGTACCATTCTTTTCAATGGCTGGACCACAATTTGTAGAGGTTGTCGGTGGACTTGGTGCTCTTCGATTACGACAGCTTTTCAGTGCAGCTCGTTCTCATTCACCAGCTATAATATTCATCGATGAGCTTGATTCCGTTGGTCGACGTCGTAATTCTGAACCTAGAGACGGCGAGGGTGTATCTGAGTTGGATCAGACACTGAATCAACTACTTGTAGAAATGGATGGAATGGATACAACTGAAGGTGTTATTGTATTTGGAGCGACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAGACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATAC-ATTGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGCCTGGTGTCCTG]

[-] EMBL CD163327             [AAAAACTTTGCTTGTTAAAGCATTGGCCAATGAAGCGGAAGTACCATTCTTTTCAATGGCTGGACCACAATTTGTAGAGGTTGTCGGTGGACTTGGTGCTCTTCGATTACGACAGCTTTTCAGTGCAGCTCGTTCTCATTCACCAGCTATAATATTCATCGATGAGCTTGATTCCGTTGGTCGACGTCGTAATTCTGAACCTAGAGACGGCGAGGGTGTATCTGAGTTGGATCAGACACTGAATCAACTACTTGTAGAAATGGATGGAATGGATACAACTGAAGGTGTTATTGTATTTGGAGCGACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAGACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATAC ATTGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGCCTGGTGTCCTG]
[+] EMBL CD115008             [                         GCCAATGAAGCGGAAGTACCATTCTTTTCAATGGCTGGACCACAATTTGTAGAGGTTGTCGGTGGACTTGGTGCTCTTCGATTACGACAGCTTTTCAGTGCAGCTCGTTCTCATTCACCAGCTATAATATTCATCGATGAGCTTGATTCCGTTGGTCGACGTCGTAATTCTGAACCTAGAGACGGCGAGGGTGTATCTGAGTTGGATCAGACACTGAATCAACTACTTGTAGAAATGGATGGAATGGATACAACTGAAGGTGTTATTGTATTTGGAGCGACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAGACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATAC ATCGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGT                          ]
[-] EMBL CD160072             [                                                                                                                                                AGCTATAATATTCATCGATGAGCTTGATTCCGTTGGTCGACGTCGTAATTCTGAACCTAGAGACGGCGAGGGTGTATCTGAGTTGGATCAGACACTGAATCAACTACTTGTAGAAATGGATGGAATGGATACAACTGAAGGTGTTATTGTATTTGGAGCGACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAGACATATTTTTATAGATT                                                                                                                   ]
[-] EMBL CD143196             [                                                                                                                                                     TAATATTCATCGATGAGCTTGATTGCGTCGGTCGACGTCGTAATTCTGAACCTAGAGACGGCGAGGGTGTATCTGAGTTGGATCAGACACTGAATCAACTACTTGTAGAAATGGATGGAATGGATACAACTGAAGGTGTTCTTGTATTTGGAGCGACAAATCGAGCTGGCTTGTTAGATCAAGCTCTGTTCCGTGCAGGACGATCTGACAGACATATTTTTATAGATCTTCCGAGTCTACCTGCTCGTATAGAAATATGCGCTGTATACGATTGCTCAATATCATCTTGCTCGTGATGTCGTACAAAATGGACTTCTTGggcg                    ]


>consensus_10615#2 AAAAACTTTGCTTGTTAAAGCATTGGCCAATGAAGCGGAAGTACCATTCTTTTCAATGGC TGGACCACAATTTGTAGAGGTTGTCGGTGGACTTGGTGCTCTTCGATTACGACAGCTTTT CAGTGCAGCTCGTTCTCATTCACCAGCTATAATATTCATCGATGAGCTTGATTCCGTTGG TCGACGTCGTAATTCTGAACCTAGAGACGGCGAGGGTGTATCTGAGTTGGATCAGACACT GAATCAACTACTTGTAGAAATGGATGGAATGGATACAACTGAAGGTGTTATTGTATTTGG AGCGACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAG ACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATACAT TGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGC CTGGTGTCCTG



consensusID : consensus_10615#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence
                              [TACAATGCAATTTCGAGATGTTTCTCGGGAAACATCTTGCGGGAAGTCTAATAAATATAGCAACAGAAGCAACGTACGCTCAGTTCAGGAATGACTCAAGCCTAGTTGGAAATCGTCAGTTTTGACGAGAGAGTCATGCCAGTGGACCGTTCGTCTGTGAAGCCGTTACTGTCAAAAGAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACACCTGTA]

[-] EMBL CD126185             [TACAATGCAATTTCGAGATGTTTCTCGGGAAACATCTTGCGGGAAGTCTAATAAATATAGCAACAGAAGCAACGTACGCTCAGTTCAGGAATGACTCAAGCCTAGTTGGAAATCGTCAGTTTTGACGAGAGAGTCATGCCAGTGGACCGTTCGTCTGTGAAGCCGTTACTGTCAAAAGAACGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAATGTTGGAGGAGAATAAGGACACCTGTA]


>consensus_10615#3 TACAATGCAATTTCGAGATGTTTCTCGGGAAACATCTTGCGGGAAGTCTAATAAATATAG CAACAGAAGCAACGTACGCTCAGTTCAGGAATGACTCAAGCCTAGTTGGAAATCGTCAGT TTTGACGAGAGAGTCATGCCAGTGGACCGTTCGTCTGTGAAGCCGTTACTGTCAAAAGAA CGGAAGCCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTG TAAAAATGTTGGAGGAGAATAAGGACACCTGTA



consensusID : consensus_10615#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence
                              [TATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGCTCTAGCCGCTCTTTGCCTGAGCCGCT]

[-] EMBL CD090782             [TATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAAAGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAAGTTTTGACGAAGAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGCTCTAGCCGCTCTTTGCCTGAGCCGCT]


>consensus_10615#4 TATACAATGCAATTTCAGATGTTTCCGAAAAACATCTTCGGGAAGCTAATAAATTAGCAA AGAAGCAAGTACGTCAGTTCGGAATGTCTAAGTCTATTGGAAATCTCAAGTTTTGACGAA GAGTCATCCAGTGGACCGTTCTCTGTGAAGCCGCTCTAGCCGCTCTTTGCCTGAGCCGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10615#1      ------------------------------------------------------------
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      TTGCACCCGCTGTAGATTGGATGGAATGCATACAACTGAAGGTGTTATTGTATTTGGAGC 60
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      ------------------------------------------------------------
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      GACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTGCAGGACGATTTGACAGACA 120
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      ------------------------------------------------------------
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      TATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAATATTCGCTGTATACATTGC 180
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      ------------------------------------------------------------
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      TCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTGTTGAACGTTTATCAGCCTG 240
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      ------------------------------------------------------------
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      GTGTCCTGGAATGTCTGGAGCCGATATTACACGTCTATGTAATGAAGCTGCTTTGTCTGC 300
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      ------------------------------------------------------------
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      TGCTCGAAGAGATGATGAAGTTGTTGGTGTTACTAAAGCTGATTTTGAAGCAGCATTTGA 360
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      -----------------------------------------------------------T 1
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      AAGAATTTTAGCAGGCGCTGCAAAACGTTCAAATCCACTTACGGTTGCTGAACGCCACAT 420
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      GTCTGCTGTCCATGAATCTGGGAGGGCTCTTGTAGCATGGCTTCTTTCAAATAGTGGAAT 61
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      GTCTGCTGTCCATGAATCTGGGAGGGCTCTTGTAGCATGGCTTCTTTCAAATAGTGGAAT 480
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      ACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGA 121
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      ACTACCGGTAAAAATCTCAATTATACCGCGTACGGTTTCTGGTCCAGATACTGTTGGAGA 540
consensus_10615#2      ------------------------------------------------------------
                                                                                   

consensus_10615#1      TCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGC 181
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      TCTGGGTTTTACTCAGTTAATATCAGAAGAAAAATATTTACTTAATGCTGATGATCTAGC 600
consensus_10615#2      ------------AAAAACTTTGCTTGTTAAAGCATTGGCCAATGAAGCGGAAGTACCATT 48
                                                                                   

consensus_10615#1      TGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAAT 241
consensus_10615#3      -------------------------------------------------TACAATGCAAT 11
consensus_10615#4      -----------------------------------------------TATACAATGCAAT 13
consensus_10615#0      TGATCGTATGTCTGTATTACTGGGTGGTAGAGCAGCTGAGCATGTTGTATACAATGCAAT 660
consensus_10615#2      CTTTTCAATGGCTGGACCAC-AATTTGTAGAGGTTGTCGGTGGACTTGGTGCTCTTCGAT 107
                                                                        * *  * * **

consensus_10615#1      TTC-AGATGTTTC-CGAAAAACATCTT-CGGGAAG-CTAATAAAT-TAGCAA-AGAAGCA 295
consensus_10615#3      TTCGAGATGTTTCTCGGGAAACATCTTGCGGGAAGTCTAATAAATATAGCAACAGAAGCA 71
consensus_10615#4      TTC-AGATGTTTC-CGAAAAACATCTT-CGGGAAG-CTAATAAAT-TAGCAA-AGAAGCA 67
consensus_10615#0      TTC-AGATGTTTC-CGAAAAACATCTT-CGGGAAG-CTAANTAAT-TAGCNAAGAAAGCA 715
consensus_10615#2      TACGACAGCTTTTCAGTGCAGCTCGTT-CTCATTCACCAGCTATAATATTCATCGATGAG 166
                       * * * *  ***   *   * *   ** *       * *   *   **   *   * *  

consensus_10615#1      A-GTACG-TCAGTTC-GGAATGTCT-AAGTCTA---TTGGAAATC-TCAGTTTTGACGA- 346
consensus_10615#3      ACGTACGCTCAGTTCAGGAATGACTCAAGCCTAG--TTGGAAATCGTCAGTTTTGACGAG 129
consensus_10615#4      A-GTACG-TCAGTTC-GGAATGTCT-AAGTCTA---TTGGAAATCTCAAGTTTTGACGA- 119
consensus_10615#0      G--TACG-TCAGTTC-GGAATGTCT-AAGTCTA---TTGGAAATC-TCAGTTTTGACGA- 765
consensus_10615#2      C--TTGATTCCGTTGGTCGACGTCGTAATTCTGAACCTAGAGACGGCGAGGGTGTATCTG 224
                          *    ** ***     * * *  **  **     * ** *     **  *  *    

consensus_10615#1      AGAGTCAT---CCAGTGGACCGTTC-TCTGTGAAGCCGTT-CTGTCAAAA--AACGGAAG 399
consensus_10615#3      AGAGTCATG--CCAGTGGACCGTTCGTCTGTGAAGCCGTTACTGTCAAAAG-AACGGAAG 186
consensus_10615#4      AGAGTCAT---CCAGTGGACCGTTC-TCTGTGAAGCCGCTCTAGCCGCTCTTTGCCTGAG 175
consensus_10615#0      AGAGTCAT---CCAGTGGACCCGTC-TCTGTGAAGCCGTT-CTGTCAANA---ACGGAAG 817
consensus_10615#2      AGTTGGATCAGACACTGAATCAACTACTTGTAGAAATGGATGGAATGGATACAACTGAAG 284
                       **    **    ** ** * *       ***  *   *                *   **

consensus_10615#1      CCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAA 459
consensus_10615#3      CCATCATGGAAATAGAAGCCAACCAACTTGTAACTTCAGCATTTTCACGTTCTGTAAAAA 246
consensus_10615#4      CCGCT------------------------------------------------------- 180
consensus_10615#0      C-ATCATGGAA-TAGAAGC-ACCNANNCTGTA--CTCAGCATTT-CACGT-CTGTAAAAA 870
consensus_10615#2      GTGTTATTGTATTTGGAGCGACAAATCGAGCTGACTTGTTAGATCAAGCTCTGTTACGTG 344
                                                                                   

consensus_10615#1      TGTTGGAGGAGAATAAGGACAACCTGTTAGCGCTTATTGATGCTCTTGTAAAGAATGAAG 519
consensus_10615#3      TGTTGGAGGAGAATAAGGACA-CCTGTA-------------------------------- 273
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      TGTTG-AGGAGA--TAGGACNNACTGTACGCTTATGATGCT-CTGTAANGATGNNAGTCT 926
consensus_10615#2      CAGGACGATTTGACAGACATATTTTTATAGATTTACCGAATCTAGCTGAACGTAAAGAAA 404
                                                                                   

consensus_10615#1      TTCTCAGTTACGATGATCTGAAGAAACTTTTAGGTGATAACCAACGTCCAACAAAAATTA 579
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      ANTACGAGATCTGAGAACTTTAGTGATACCCACGTCACAAATNAACCNGACTAAGGACTT 986
consensus_10615#2      TATTCGCTGTATACATTGCTCAATATCAACTTGCTCCTGATGTTGTACAAAATGAACTTG 464
                                                                                   

consensus_10615#1      GACCTCGACTATAATGTACTTTTGTTGTAATTCCTTCCATTTTTCGTGTATATAAAGATC 639
consensus_10615#3      ------------------------------------------------------------
consensus_10615#4      ------------------------------------------------------------
consensus_10615#0      TGTGAAATCTCCATTTCGGNTTAAG----------------------------------- 1011
consensus_10615#2      TTGAACGTTTATCAGCCTGGTGTCCTG--------------------------------- 491
                                                                                   

consensus_10615#1      GT 641
consensus_10615#3      --
consensus_10615#4      --
consensus_10615#0      --
consensus_10615#2      --
                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)