These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1030 fasta sequence [AACTATATGTAATCATATTAACGCACGTACACCATCATGGACAACAATGCAAACGGAAAACACTGAAATTCAGGATCAAGAGAATTTTAAGAGTTTTTAGAACTATGGCAATCAAACCAATTGGTAGTCAAACATATAGACAGAAATTCGATCCGCTAAACCATATGAAAAAGGTTGGACAACCAAATGGTCAGAGACCAACCGAACAAGGCAGTCAAGAGTAGTAAAAAGACGAATGTAACCTTCTTCTTCGTCCTCTAGTTAAATCAATCTGAAAATATTAGTAAAATACTCAAAACGAAACTGAATCAACCCATGCATTCACTTATTGTGCTTTGAAATACATTATAATATGTCCACAGTATTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGAATACAAAAGGAACTNTTCTGCNAATCAGTAGACTTGTAAAGTATTGTAGCACTAGAAAATTATGAACGCCCATTATTTGAGGTTNGAGGGATATGACATGAGTGACGTTCGAGGAGGCAGGTACACAGGCCACGAGCAGAGGACTCCCATGATCATGTAANTCTGNNNTCGAAAGATTCAATAGCTCACATCTTGGCGCGCGGACTATGGAATNTAATGNATAGAATAGCTTCTTTTCTGAGATACTATCAATCTTGAACGCATCGACTGCCNATTGAATCNGACGTATGGCAGACANTACTACGAACTACTGCATTGGGCATCTAGNTATNATANGTTGAGTCACAACGAAANGTANAANNNTCTACTACG] [+] EMBL CD074483 [AACTATATGTAATCATATTAACGCACGTACACCATCATGGACAACAATGCAAACGGAAAACACTGAAATTCAGGATCAAGAGAATTTTAAGAGTTTTTAGAACTATGGCAATCAAACCAATTGGTAGTCAAACATATAGACAGAAATTCGATCCGCTAAACCATATGAAAAAGGTTGGACAACCAAATGGTCAGAGACCAACCGAACAAGGCAGTCAAGAGTAGTAAAAAGACGAATGTAACCTTCTTCTTCGTCCTCTAGTTAAATCAATCTGAAAATATTAGTAAAATACTCAAAACGAAACTGAATCAACCCATGCATTCACTTATTGTGCTTTGAAATACATTATAATATGTCCACAGTATTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGAATACAAAAGGAACTNTTCTGCNAATCAGTAGACTTGTAAAGTATTGTAGCACTAGAAAATTATGAACGCCCATTATTTGAGGTTNGAGGGATATGACATGAGTGACGTTCGAGGAGGCAGGTACACAGGCCACGAGCAGAGGACTCCCATGATCATGTAANTCTGNNNTCGAAAGATTCAATAGCTCACATCTTGGCGCGCGGACTATGGAATNTAATGNATAGAATAGCTTCTTTTCTGAGATACTATCAATCTTGAACGCATCGACTGCCNATTGAATCNGACGTATGGCAGACANTACTACGAACTACTGCATTGGGCATCTAGNTATNATANGTTGAGTCACAACGAAANGTANAANNNTCTACTACG] [+] EMBL CD074474 [AACTATATGTAATTTTATTAACGCACGTACACCATCATGGACAACAATGCAAACGGAAAACACTGAAATTCAGGATCAAGAGAATTTTAAGAGTTTTTAGAACTATGGCAATCAAACCAATTGGTAGTCAAACATATAGACAGAAATTCGATCCGCTAAACCATATGAAAAAGGTTGGACAACCAAATGGTCAGAGACCAACCGAACAAGGCAGTCAAGAGTAGTAAAAAGACGAATGTAACCTTCTTCTTCGTCCTCTAGTTAAATCAATCTGAAAATATTAGTAAAATACTCAAAACGAAACTGAATCAACCCATGCATTCACTTATTGTGCTTTGAAATACATTATAATATGTCCACAGTATTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGA ] [+] EMBL CD074305 [AACTATATGTAATCATATTAACGCACGTACACCATCATGGACAACAATGCAAACGGAAAACACTGAAATTCAGGATCAAGAGAATTTTAAGAGTTTTTAGAACTATGGCAATCAAACCAATTGGTAGTCAAACATATAGACAGAAATTCGATCCGCTAAACCATATGAAAAAGGTTGGACAACCAAATGGTCAGAGACCAACCGAACAAGGCAGTCAAGAGTAGTAAAAAGACGAATGTAACCTTCTTCTTCGTCCTCTAGTTAAATCAATCTGAAAATATTAGTAAAATACTCAAAACGAAACTGAATCAACCCATGCATTCACTTATTGTGCTTTGAAATACATTATAATATGTCCACAGTATTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAAT ] [+] EMBL CD074294 [AACTATATGTAATCATATTAACGCACGTACACCATCATGGACAACAATGCAAACGGAAAACACTGAAATTCAGGATCAAGAGAATTTTAAGAGTTTTTAGAACTATGGCAATCAAACCAATTGGTAGTCAAACATATAGACAGAAATTCGATCCGCTAAACCATATGAAAAAGGTTGGACAACCAAATGGTCAGAGACCAACCGAACAAGGCAGTCAAGAGTAGTAAAAAGACGAATGTAACCTTCTTCTTCGTCCTCTAGTTAAATCAATCTGAAAATATTAGTAAAATACTCAAAACGAAACTGAATCAACCCATGCATTCACTTATTGTGCTTTGAAATACATTATAATATGTCCACAGTATTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTG ] consensusID : consensus_10646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 939 fasta sequence [TGCATTCACTATTGTGCTTTGAAATACATATAATNATGTCCACAGTATTACCAATATACGCTNTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATCCAAAGAANCGAAATCCAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAANAGCTAGTATTNTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAATGTAAATTCTGTTTCGGAAAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTCTCAAAGAAAATGCATAACCCAAAAGGTGGTCCGAGTATCAAATACACAACTTTCATCTGCTAAATCGTAAGTATCGATTCGCAAACAATTTTTGAGTCCTCAAAACATTGACGCAATGGGTGCAGCATGGGGGGTCAAATTCAAATGTGTCGAACTAATTGAAAACAATAAGACTCATGGAAATTATAAATTGTATATAGAATAGTCATTTCTTTTTCCTGGAAGATAAACTCATTCAAAATTTCTTTGGAGACCGCCAATCGGACATTGTCCACAGAATCTGAAGATACCAGGACAACCGAATAAATGGCCAACAGGATACCAAAACTAAACCCCATCACGTGAACAGACTTCAAACCTCGTGCCGAATTAATGGCTCG] [-] EMBL CD081727 [TGCATTCACTATTGTGCTTTGAAATACATATAATNATGTCCACAGTATTACCAATATACGCTNTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATCCAAAGAANCGAAATCCAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAANAGCTAGTATTNTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAATGTAAATTCTGTTTCGGAAAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTCTCAAAGAAAATGCATAACCCAAAAGGTGGTCCGAGTATCAAATACACAACTTTCATCTGCTAAATCGTAAGTATCGATTCGCAAACAATTTTTGAGTCCTCAAAACATTGACGCAATGGGTGCAGCATGGGGGGTCAAATTCAAATGTGTCGAACTAATTGAAAACAATAAGACTCATGGAAATTATAAATTGTATATAGAATAGTCATTTCTTTTTCCTGGAAGATAAACTCATTCAAAATTTCTTTGGAGACCGCCAATCGGACATTGTCCACAGAATCTGAAGATACCAGGACAACCGAATAAATGGCCAACAGGATACCAAAACTAAACCCCATCACGTGAACAGACTTCAAACCTCGTGCCGAATTAATGGCTCG] [+] EMBL CD140913 [ TGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGTATTGTAAGTAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAATGTAAATTCTGTTTCGGAAAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGT ] consensusID : consensus_10646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 760 fasta sequence [GCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC-TTGTTATACTCCTTCAGTCTGTGAATTGTAAG-TAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAAT-GTAAATTCTGTTTCGGAAAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTGACTCATGGAAATTATAAATTGTATATAGAATAGTCATTTCTTTTTCCTGGAAGATAAACTCATTCAAAATTTCTTTGGAGACCGCCAATCGGACATTGTCCACAGAATCTGAAGATACCAGGACAACCGAATAAATGGCCAACAGGATACCAAAACTAAACCCCATCACGTTGAACAGACTTCAAACCTCGTGCCGANAT-AAGGCTCCGAG] [+] EMBL AI444551 [GCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTTGTTATACTCCTGCAGTCTGTGAATTGTAAGATAGACCAGGTGCAGAAGAATAC AAAAGGACTTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGGAGCACCAG AAAATTATGCACGCCATTTA TTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGCCTCCCATGAACCAATGGTAAATTCTGTTGCGG AAAGAT TNCAATAGC CCACATC TTGGGAGCCGGTGACTCAHGG AATTTTAAA TGGGTATAGAATGGTCA TGCTTTTg ] [-] EMBL CD081695 [ ATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCTTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAAT GTAAATTCTGTTTCGGAAAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTGACTCATGGAAATTATAAATTGTATATAGAATAGTCATTTCTTTTTCCTGGAAGATAAACTCATTCAAAATTTCTTTGGAGACCGCCAATCGGACATTGTCCACAGAATCTGAAGATACCAGGACAACCGAATAAATGGCCAACAGGATACCAAAACTAAACCCCATCACG TGCACAGACTTCAAACCTCGTGCCGANAT AAGGCT ] [-] EMBL CD080378 [ TACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATCCAAAGAAACGAAATNCAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCTTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAAT GTAAATTCTGTTTCGGAAAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTGACTCATGGAAATTATAAATTGTATATAGAATAGTCATTTCTTTTTCCTGGAAGATAAACTCATTCAAAATTTCTTTGGAGACCGCCAATCGGACATTGTCCACAGAATCTGAAGATACCAGGACAACCGAATAAATGGCCAACAGGATACCAAAACTAAACCCCATCACGTTGAACAGACTTC AACCTCGTGCCGA ATNTTGGCTCCGAG] [-] EMBL CD080390 [ TACGTTTCCCACTCTTTAAATATATAACATATATATAATAGATCCAAAGAANCGAAATNCAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCTTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAAT GTAAATTCTGTTTCGGAAAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTGACTCATGGAAATTATAAATTGTATATAGAATAGTCATTTCTTTTTCCTGGAAGATAAACTCATTCAAAATTTCTTTGGAGACCGCCAATCGGACATTGTCCACAGAATCTGAAGATACCAGGACAACCGAATAAATGGCCAACAGGATACCAAAACTAAACCCCATCACGTTGAACAGACTTCAA ] [+] EMBL AI067244 [ GTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCTTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAAT GTAAATTCTGTTTCGGAAAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTGACTCATGGAAATTATAAATTGTATATAGAAAAGTCATTTCTTTTTCCTGGAAGATAAAC ] [+] EMBL AI067776 [ GTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCTTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAATGACTCCCAT ] [+] EMBL AI068273 [ GTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCTTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACACAACAGAACTTTTCTGCAAATCAGTAGACTTGTGAGTAATTGTAGCACTAGGAAAATTATGAACGCCATTTATTTGACGTTTGAGGATTATGAC ] [+] EMBL AI068274 [ GTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAGACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCTTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACANAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAG AAAATTATGAACG CATTTATTTGACGTTTGACGATTATG ] [+] EMBL AI067107 [ GTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCTTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACAGAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAGATT ] [+] EMBL AI067394 [ GTTTCCCACTCTTTAAATATATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACATAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGC TTGTTATACTCCGTCAGTCTGTGAATTGTAAG TAGACCAGGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAGTCAGTAGACTTGTAAGTAATTGTAGCACTAGAAA ] [+] EMBL CD133707 [ GGTGCAGAAGAATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGCAGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAAT GTAAATTCTGTTTCGGANAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTGACTCATGGAAATTATAAATTGTATATAGAATAGTCA ] consensusID : consensus_10646#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [TTTTTTTTTTTTTTTTCAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGAATACAACAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCAATTTATTTAGGTTTGAGGATTATGACATGAGTGACGTTCCAGGAG] [+] EMBL AI395275 [TTTTTTTTTTTTTTTTCAAATGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGCTCGAGTGCCACAGCATATATGGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCAATTGTATGAGAAGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGAATACAACAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAAATTATGAACGCAATTTATTTAGGTTTGAGGATTATGACATGAGTGACGTTCCAGGAG] consensusID : consensus_10646#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 124 fasta sequence [ATTAGCGGGTATTTTGAAGTCTGTTCAACGTGATGGGGTTTAGTTTTGGTATCCTGTTGGCCATTTATTCGGTTGTCCTGGTATCTTCAGATTCTGTGGACAATGTCCGAATTGGCGTCCTCCA] [+] EMBL CD162861 [ATTAGCGGGTATTTTGAAGTCTGTTCAACGTGATGGGGTTTAGTTTTGGTATCCTGTTGGCCATTTATTCGGTTGTCCTGGTATCTTCAGATTCTGTGGACAATGTCCGAATTGGCGTCCTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10646#1 ------------------------------------------------------------ consensus_10646#2 ------------------------------------------------------------ consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 AACTATATGTAATCATATTAACGCACGTACACCATCATGGACAACAATGCAAACGGAAAA 60 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 ------------------------------------------------------------ consensus_10646#2 ------------------------------------------------------------ consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 CACTGAAATTCAGGATCAAGAGAATTTTAAGAGTTTTTAGAACTATGGCAATCAAACCAA 120 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 ------------------------------------------------------------ consensus_10646#2 ------------------------------------------------------------ consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 TTGGTAGTCAAACATATAGACAGAAATTCGATCCGCTAAACCATATGAAAAAGGTTGGAC 180 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 ------------------------------------------------------------ consensus_10646#2 ------------------------------------------------------------ consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 AACCAAATGGTCAGAGACCAACCGAACAAGGCAGTCAAGAGTAGTAAAAAGACGAATGTA 240 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 ------------------------------------------------------------ consensus_10646#2 ------------------------------------------------------------ consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 ACCTTCTTCTTCGTCCTCTAGTTAAATCAATCTGAAAATATTAGTAAAATACTCAAAACG 300 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 ----------------TGCATTCACT-ATTGTGCTTTGAAATACATATAATNATGTCCAC 43 consensus_10646#2 ---------------------------GCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT 33 consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 AAACTGAATCAACCCATGCATTCACTTATTGTGCTTTGAAATACATTATAATATGTCCAC 360 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 AGTATTACCAATATACGCTNTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATA 103 consensus_10646#2 TTTTTTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATA 93 consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 AGTATTACCAATATACGCTTTTCTATTTATTTACTAAATACGTTTCCCACTCTTTAAATA 420 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 TATAACATATATATAATAGATCCAAAGAANCGAAATCCAACGTGAGAAGAAATATACAAA 163 consensus_10646#2 TATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAA 153 consensus_10646#3 ----------------------------------------TTTTTTTTTTTTTTTTCAAA 20 consensus_10646#0 TATAACATATATATAATAGATACAAAGAAACGAAATACAACGTGAGAAGAAATATACAAA 480 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 TGAAGAAGAGTATTATGAANAGCTAGTATTNTGATGCGC-TCGAGTGCCACAGCATATAT 222 consensus_10646#2 TGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGC-TCGAGTGCCACAGCATATAT 212 consensus_10646#3 TGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGC-TCGAGTGCCACAGCATATAT 79 consensus_10646#0 TGAAGAAGAGTATTATGAAAAGCTAGTATTTTGATGCGC-TCGAGTGCCACAGCATATAT 539 consensus_10646#4 -----------------ATTAGCGGGTATTTTGAAGTCTGTTCAACGTGATGGGGTTTA- 42 * *** ***** *** * * * * * * * ** consensus_10646#1 GGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCA-ATTGTATGAGA 281 consensus_10646#2 GGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCA-ATTGTATGAGA 271 consensus_10646#3 GGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCA-ATTGTATGAGA 138 consensus_10646#0 GGTATCAGTAAGCAGGGTGTAACAAACAAAGCGAAACCAATCCACTCA-ATTGTATGAGA 598 consensus_10646#4 -GTTTTGGTATCCTGTTGGCCATTTATTCGGTTGTCCTGGTATCTTCAGATTCTGTGGAC 101 ** * *** * * * * * * * * *** *** * ** consensus_10646#1 AGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGA 341 consensus_10646#2 AGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGA 331 consensus_10646#3 AGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGA 198 consensus_10646#0 AGTGAAACGCTTGTTATACTCCTTCAGTCTGTGAATTGTAAGTAGACCAGGTGCAGAAGA 658 consensus_10646#4 AATGTCCGAATTGGCGTCCTCCA------------------------------------- 124 * ** *** * **** consensus_10646#1 ATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAA 401 consensus_10646#2 ATACAAAAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAA 391 consensus_10646#3 ATACAACAAGGAACTTTTCTGCAAATCAGTAGACTTGTAAGTAATTGTAGCACTAGAAAA 258 consensus_10646#0 ATACAA-AAGGAACTNTTCTGCNAATCAGTAGACTTGTAAAGTATTGTAGCACTAGAAAA 717 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 ATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGC 461 consensus_10646#2 ATTATGAACGCCATTTATTTGAGGTTTGAGGATTATGACATGAGTGACGTTCGAGGAGGC 451 consensus_10646#3 ATTATGAACGCAATTTATTT-AGGTTTGAGGATTATGACATGAGTGACGTTCCAGGAG-- 315 consensus_10646#0 -TTATGAACGCCCATTATTTGAGGTTNGAGGGATATGACATGAGTGACGTTCGAGGAGGC 776 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 AGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAATGTAAATTCTGTTTCGGA 521 consensus_10646#2 AGGTACAACAGGCCACCGAGCAGAAGGACTCCCATGAATCAATGTAAATTCTGTTTCGGA 511 consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 AGGTACA-CAGGCCAC-GAGCAGA-GGACTCCCATGATC--ATGTAANTCTGNNNTCGAA 831 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 AAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGTCTCAAAGAAAATGCATAACCCAA 581 consensus_10646#2 AAAGATATCAAATAGCTCAACATCTTTGGCAGCGCGT----------------------- 548 consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 AGA----TTCAATAGCTCA-CATCTT----GGCGCGC----------------------- 859 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 AAGGTGGTCCGAGTATCAAATACACAACTTTCATCTGCTAAATCGTAAGTATCGATTCGC 641 consensus_10646#2 ------------------------------------------------------------ consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 ------------------------------------------------------------ consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 AAACAATTTTTGAGTCCTCAAAACATTGACGCAATGGGTGCAGCATGGGGGGTCAAATTC 701 consensus_10646#2 ------------------------------------------------------------ consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 ------------------------------------------------------------ consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 AAATGTGTCGAACTAATTGAAAACAATAAGACTCATGGAAATTATAAATTGTATATAGAA 761 consensus_10646#2 -----------------------------GACTCATGGAAATTATAAATTGTATATAGAA 579 consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 -----------------------------GGACTATGGAATNTA------ATGNATAGAA 884 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 TAGTCATTTCTTTTTCCTGGAAGATAAACTCATTCAAAATTTCTTTGGAGACCGCCAATC 821 consensus_10646#2 TAGTCATTTCTTTTTCCTGGAAGATAAACTCATTCAAAATTTCTTTGGAGACCGCCAATC 639 consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 TAGCT-----TCTTTTCTG--AGATACTATCAATCTTGAACGCATCG---ACTGCCNATT 934 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 GGACATTGTCCACAGAATCTGAAGATACCAGGACAACCGAATAAATGGCCAACAGGATAC 881 consensus_10646#2 GGACATTGTCCACAGAATCTGAAGATACCAGGACAACCGAATAAATGGCCAACAGGATAC 699 consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 GAATCNGACGTATGGCAGACANTACTAC--GAACTACTGCAT---TGGGCATCTAGNTAT 989 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 CA-AAACTAAACCCCATCACGT-GAACAGACTTCAAACCTCGTGCCGAATTAATGGCTCG 939 consensus_10646#2 CA-AAACTAAACCCCATCACGTTGAACAGACTTCAAACCTCGTGCCGANATAAGGCTCCG 758 consensus_10646#3 ------------------------------------------------------------ consensus_10646#0 NATANGTTGAGTCACAACGAAANGTANAANNNTCTA-CTACG------------------ 1030 consensus_10646#4 ------------------------------------------------------------ consensus_10646#1 -- consensus_10646#2 AG 760 consensus_10646#3 -- consensus_10646#0 -- consensus_10646#4 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||