These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 592 fasta sequence [CTCCAGGCCAANAATTTGGCACGAGGGATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG-ATATTTCATTAAAG-CCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATGTTTC] [+] EMBL CD081095 [CTCCAGGCCAANAATTTGGCACGAGGGATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATATTTCATTAAAG CCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATGTTT ] [-] EMBL CD074918 [ ATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATATTTCATTAAAG CCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATGTTTC] [-] EMBL CD177712 [ CAACAGCACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCC ] [+] EMBL BG931795 [ gTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGA ] [+] EMBL BG931780 [ gtcaatCACAATACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGA ] [+] EMBL CD171522 [ CAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTC ] [+] EMBL CD193843 [ CACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCC ] [-] EMBL CD177788 [ ACACTGTCTCNCCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATA ] [-] EMBL CD177724 [ AACTAGAAAATCTCAGCATCCAAACACAACTNCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATCCCTCAAATAAAAACAATTGAATTCTTACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATA ] [-] EMBL CD177703 [ ACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATA ] [+] EMBL BF440108 [ AGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATATTTCATTAAAG CCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATG ] [-] EMBL CD171544 [ AAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATA ] [+] EMBL SMAA14108 [ CTTGATTCCTCAAATAAAAACAATTGAATACTCACAAAACGAAAATCTTTTAAAACTTACAACAATTTTGAAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCT CAACGCAAACACCAGCTAATAAGCATATTTCATTAAAGTCCTTATAACT ] consensusID : consensus_10650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [ATTCATAGTGATTTTGGTATTTGTATTCAGTAGGAATTGTTACATTTGATAATGTCAAGGTCAAAGAGATCACCAAGAACAACAACACTATTACACACACTACAATCATTATGTAGGAAAGCTGTACTACAACACAACACGGTAACCGACCAAAACAACTGGAAGGTCACGACATACAAACGCAACTGCAGACTACACATACTCACCAAACAACACTGTCACAACACAACACGTAGCCAGCCGAACAACTGGAAATTCACGACTACCCACACCACTACCGGACCTACGATTAAACTGATACCAAGGATTTGATTGACTTTTTTTACGACGTATTACACCATTATAACCTTGATTTCACACAAAGCAGATCATTTTAGACGGCACATTTGGGGAAATTTAGCCACACATC] [+] EMBL AI618814 [ATTCATAGTGATTTTGGTATTTGTATTCAGTAGGAATTGTTACATTTGATAATGTCAAGGTCAAAGAGATCACCAAGAACAACAACACTATTACACACACTACAATCATTATGTAGGAAAGCTGTACTACAACACAACACGGTAACCGACCAAAACAACTGGAAGGTCACGACATACAAACGCAACTGCAGACTACACATACTCACCAAACAACACTGTCACAACACAACACGTAGCCAGCCGAACAACTGGAAATTCACGACTACCCACACCACTACCGGACCTACGATTAAACTGATACCAAGGATTTGATTGACTTTTTTTACGACGTATTACACCATTATAACCTTGATTTCACACAAAGCAGATCATTTTAGACGGCACATTTGGGGAAATTTAGCCACACATC] consensusID : consensus_10650#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [CAAACACGGTACCAGCAAACACTAGATGTCCCGCATACAGCGCACTGCAGACATCACATACCTCAAACACACTGTCTCACACAACACAGTACCAGCAAAACACTAGAATATCTCAGCATCCAAACACAACTCCAAGCCATACTGATACACCCGTACAAAAGTATTTGATTAGCTTATTACTCAGCTTGCACTCCTCAAATAAAAACAATTGTCTTCTCACAAAACGAATATCTTTTTAAGCCTTGCAACTAATTTTGGAGAACATATCGCAACACAATCAGAAGTAGATCTCGTCCTCCAACGACAACCCCAGCTATTAGCTTTTCACTAAGCCTTATACTCATGATTCAATATTTTGTTTACGAAAAGCAATACATACTGATATGTT] [+] EMBL AI447049 [CAAACACGGTACCAGCAAACACTAGATGTCCCGCATACAGCGCACTGCAGACATCACATACCTCAAACACACTGTCTCACACAACACAGTACCAGCAAAACACTAGAATATCTCAGCATCCAAACACAACTCCAAGCCATACTGATACACCCGTACAAAAGTATTTGATTAGCTTATTACTCAGCTTGCACTCCTCAAATAAAAACAATTGTCTTCTCACAAAACGAATATCTTTTTAAGCCTTGCAACTAATTTTGGAGAACATATCGCAACACAATCAGAAGTAGATCTCGTCCTCCAACGACAACCCCAGCTATTAGCTTTTCACTAAGCCTTATACTCATGATTCAATATTTTGTTTACGAAAAGCAATACATACTGATATGTT] consensusID : consensus_10650#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 298 fasta sequence [ACTTCAATAATGTTGAATAGATTCATAGTGATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAACCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGACTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAA] [-] EMBL CD188354 [ACTTCAATAATGTTGAATAGATTCATAGTGATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAACCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAA] [-] EMBL BG931812 [ TCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGAC ] [+] EMBL BG931573 [ gTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGA ] [+] EMBL BG931797 [ TCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10650#1 ----------------------------------ATTCATAGTGATTTTGGTATT-TGTA 25 consensus_10650#3 --------------ACTTCAATAATGTTGAATAGATTCATAGTGATTTTGGTATT-TGTA 45 consensus_10650#0 ----------------CTCCAGGCCAANAATTTGGCACG-AGGGATTTTGGTATT-TGTA 42 consensus_10650#2 CAAACACGGTACCAGCAAACACTAGATGTCCCGCATACAGCGCACTGCAGACATCACATA 60 * * * * ** ** consensus_10650#1 TTCAGTAGGAATTGTTACATTTGATAATGT-CAAGGTCAAAG--AGATC-ACCAAGAAC- 80 consensus_10650#3 TTC-GTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAG--AGATCCACCAAGAACC 102 consensus_10650#0 TTC-GTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAG--AGATCCACCAAGAACC 99 consensus_10650#2 CCTCAAACACACTGTCTCACACAACACAGTACCAGCAAAACACTAGAATATCTCAGCATC 120 * * *** ** * * ** * ** ** *** * ** * consensus_10650#1 AACAACACTATTACACACACTACAA-TCATTATGTAGGAAAGCTGTACTACAACACAACA 139 consensus_10650#3 AACAACACTATTACACACACTACAAACCATTATGTAGGAAAGCTGTCTCAC--CACAACA 160 consensus_10650#0 AACAACACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCAC--CACAACA 157 consensus_10650#2 CA-AACACAACTCCAAGCCATACTGATACACCCGTACAAAAG-TATTTGAT----TAGCT 174 * ***** * * ** * *** *** **** * * * * * consensus_10650#1 CGGTAACCGACCAAAACAACTGGAA-GGTCACGAC-ATACAAACGCAACTGCA-GACTAC 196 consensus_10650#3 CAGTA-CCAGCAAAAACAACTAGAA-AGTCTCAGC-ATACAACCGCAACTGCAAGACATC 217 consensus_10650#0 CAGTA-CCAGCAAAAACAACTAGAA-AGTCTCAGC-ATACAACCGCAACTGCAAGACATC 214 consensus_10650#2 TATTACTCAGCTTGCACTCCTCAAATAAAAACAATTGTCTTCTCACAAAACGAATATCTT 234 ** * * ** ** ** * * * *** * * consensus_10650#1 ACA-TACTCACCAAACAACACTGTCACAACACAACACGTAGCCAGCCGAA-CAACTGGAA 254 consensus_10650#3 ACAATACCCTCAAAACAACACTGACTCACCACAACACAGTACCAGCAAAAACAACTAGAA 277 consensus_10650#0 ACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAA 274 consensus_10650#2 TTTAAGCCTTGCAACTAATTTTGG-AGAACATATCGCAACACAATCAGAAGTAGATCTCG 293 * ** ** ** * ** * * * * * * ** * * consensus_10650#1 ATTCACGACTACCCACACC--ACTACCGGACCTACGATTAAACTGATACCAAGGATTTGA 312 consensus_10650#3 AATCTCAGC-ATCCAAAC---ACAA----------------------------------- 298 consensus_10650#0 AATCTCAGC-ATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGT 333 consensus_10650#2 TCCTCCAACGA--CAACCCCAGCTATTAGCTTTTCACTAAGCCTTATACTCATGATTCAA 351 * * * ** * * consensus_10650#1 TTGACTTTTTTTACGACGTATTACACCATTATAACCTTGATT-------TCACACAAAGC 365 consensus_10650#3 ------------------------------------------------------------ consensus_10650#0 TTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATA 393 consensus_10650#2 TATTTTGTTTACGAAAAGCAATACATACTGATATGTT----------------------- 388 consensus_10650#1 AGATCATTTTAGACGGCACATTTGGGGAAATTTAGCCACACATC---------------- 409 consensus_10650#3 ------------------------------------------------------------ consensus_10650#0 AAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAA 453 consensus_10650#2 ------------------------------------------------------------ consensus_10650#1 ------------------------------------------------------------ consensus_10650#3 ------------------------------------------------------------ consensus_10650#0 ATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG 513 consensus_10650#2 ------------------------------------------------------------ consensus_10650#1 ------------------------------------------------------------ consensus_10650#3 ------------------------------------------------------------ consensus_10650#0 ATATTTCATTAAAGCCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAAT 573 consensus_10650#2 ------------------------------------------------------------ consensus_10650#1 ------------------- consensus_10650#3 ------------------- consensus_10650#0 ACATACTGAATAATGTTTC 592 consensus_10650#2 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||