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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1130 fasta sequence
[CGTTTTTACCTGCAAATTAGTTTCACCAACCATTTCCCGAATGATAGGTAACAATGTTTTCATAATCACAGATTCCCGAATATCAGGGGCTAGAGACGAAGCAAACTTCTTCAGTTTGCCTGCAGCCGCTGCACGAACTTCACCTTCTGGATCTTTGAGCAAAATCTGGTAAACGTCTACCAAGTGCTGTCCAGCAAGTTGGGGTTTTACTGCAGCCTGTAGATCAGTAATGTGGTCAGCTAATTGATAACGGACTCGCCAAGATTTATCTTCTGCGGCTCCCCGTATAAGAGGAATGATGTGTGTTAAGACATCTTCAGTAGGAAGAACTTCAGCAAAATCTACTGACGCATTCACACCCAGTAATCGTACAGAGTCCTGATCATCTTGGGAAAGAGGAGGTAATAGCGGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCACCAATTNTGAGTTATTATTGATCACATTTCGTTATCAAGTCTGGTGTAGATACGAGTAGCAACGCCTGCAGACTTCAATATGTTGGAGGGATTTGAGGAAACAATTACGTGATTTGCATAAAAACGAGAATCCCAGATATTTACTACAATGACATGCTACGGGGATATTCCATACATTTCTAAGCCCGAAAAGAAACCCCATATTAATCTTAGTAGAGAATGAATATCCTGGAATTTGTAGGGAATTCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATGGTATCAATT]
[-] EMBL CD082456 [CGTTTTTACCTGCAAATTAGTTTCACCAACCATTTCCCGAATGATAGGTAACAATGTTTTCATAATCACAGATTCCCGAATATCAGGGGCTAGAGACGAAGCAAACTTCTTCAGTTTGCCTGCAGCCGCTGCACGAACTTCACCTTCTGGATCTTTGAGCAAAATCTGGTAAACGTCTACCAAGTGCTGTCCAGCAAGTTGGGGTTTTACTGCAGCCTGTAGATCAGTAATGTGGTCAGCTAATTGATAACGGACTCGCCAAGATTTATCTTCTGCGGCTCCCCGTATAAGAGGAATGATGTGTGTTAAGACATCTTCAGTAGGAAGAACTTCAGCAAAATCTACTGACGCATTCACACCCAGTAATCGTACAGAGTCCTGATCATCTTGGGAAAGAGGAGGTAATAGCGGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCG ]
[+] EMBL CD068428 [ gGGGGTTTTACTGCAGCCTGTAGATCAGTAATGTGGTCAGCTAATTGATAACGGACTCGCCAAGATTTATCTTCTGCGGCTCCCCGTATAAGAGGAATGATGTGTGTTACGACATCTTCAGTAGGAAGAACTTCAGCAAAATCTACTGACGCATTCACACCCAGTAA ]
[+] EMBL BG932416 [ GAGGTAATAGCGGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCT ]
[-] EMBL CD096087 [ AAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCACCAATTNTGAGTTATTATTGATCACATTTCGTTATCAAGTCTGGTGTAGATACGAGTAGCAACGCCTGCAGACTTCAATATGTTGGAGGGATTTGAGGAAACAATTACGTGATTTGCATAAAAACGAGAATCCCAGATATTTACTACAATGACATGCTACGGGGATATTCCATACATTTCTAAGCCCGAAAAGAAACCCCATATTAATCTTAGTAGAGAATGAATATCCTGGAATTTGTAGGGAATTCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATGGTATCAATT]
consensusID : consensus_10654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1039 fasta sequence
[CTCCGAGGCCAAAATTCGGCACGAGGCAAATNTATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGATACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTTGGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGATGTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAACATTTACTTCCTACGATAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGACAGCATATATGGCA-CCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTTGTGTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTGCATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGATGAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCTTTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCTTTTCTTTTTCATTTAATAAAACGTCGGANTCCATTTAAAAAAAAAAAAAAAAA]
[+] EMBL CD079707 [CTCCGAGGCCAAAATTCGGCACGAGGCAAATNTATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGATACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTTGGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGATGTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAACATTTACTTCCTACGATAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGACAGCATATATGGCA CCTn ]
[-] EMBL CD073965 [ TAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGCCAGCATATATGGCC CCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTTGTGTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTGCATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGATGAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCTTTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCGTTTCTTTTTCATTTAATAAAACG ]
[-] EMBL CD076054 [ GGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGCCAGCATATATGGCC CCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTTGTGTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTGCATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGATGAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCTTTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCTTTTCTTTTTCATTTAATAAAACG ]
[-] EMBL AI395463 [ AGGAT ATTATGATATTTAAATACATGTAAATTGACAGCATATATGGCACCCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTTGTGTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTGCATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGATGAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCTTTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCTTTTCTTTTTCATTTAATAAAACGTCGGANTCCATTTAAAAAAAAAAAAAAAAA]
consensusID : consensus_10654#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 809 fasta sequence
[CCTCGAGCCAANAATTCGGCACGAGGCCAACGCTATTTCTAAAAGCACTGGTAATTAAATAAGCAACTAAATTAAATATAGGCATTTAAATAGTGGTTCGGTGACATTTGGCAGGTTTCACTGTAGTCAATTATTACCTATAAACTGCTAATTTAGTTTTGGTCATTTCAGTTTTCTAGACCAAGATTATTTTACTGCCTTCCTAAACCGAAAGTTTTCGATACAGTTGTCTGAACTCCTACTTCATGGCGTTACAGTTTTCGTGTTAATGTCAAATGATGTTTGTTATTGACGTATTTGAATTCAGAGACCAGAACATCTCTTTAGCTCTTCAGAAATAAATTATCGTCTCTGTCAGTTGATAAGTGTTTAACTGTAACAAATCATTTGGTTTTGGAGGTTATTCTATTCATAGTTTACTTTAATTGTTTTGATTTTATTCCATGTATGCCACCATAGTGTCATCTTATTTGTTAAAGAACCACTACATGAAATACTGACTAACATGAATATTCGCGTAATTCAAATATCTGGGAAAATTTACGAGTCTACGGAAAGCTTAGCTTATCAATTCATAAAAACACACTTAC-AGTAAATTCACATANACTGCATTAAACTNTTTCACGGTTATTTTTAATATTATGATGCCAAGCAGTTAAATATTTGCCAATTATACGTTACTTTCTAAAAAAATTTACAGCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAAC]
[+] EMBL CD080557 [CCTCGAGCCAANAATTCGGCACGAGGCCAACGCTATTTCTAAAAGCACTGGTAATTAAATAAGCAACTAAATTAAATATAGGCATTTAAATAGTGGTTCGGTGACATTTGGCAGGTTTCACTGTAGTCAATTATTACCTATAAACTGCTAATTTAGTTTTGGTCATTTCAGTTTTCTAGACCAAGATTATTTTACTGCCTTCCTAAACCGAAAGTTTTCGATACAGTTGTCTGAACTCCTACTTCATGGCGTTACAGTTTTCGTGTTAATGTCAAATGATGTTTGTTATTGACGTATTTGAATTCAGAGACCAGAACATCTCTTTAGCTCTTCAGAAATAAATTATCGTCTCTGTCAGTTGATAAGTGTTTAACTGTAACAAATCATTTGGTTTTGGAGGTTATTCTATTCATAGTTTACTTTAATTGTTTTGATTTTATTCCATGTATGCCACCATAGTGTCATCTTATTTGTTAAAGAACCACTACATGAAATACTGACTAACATGAATATTCGCGTAATTCAAATATCTGGGAAAATTTACGAGTCTACGGAAAGCTTAGCTTATCAATTCATAAAAACACACTTAC AGTAAATTCACATANACTGCATTAAACTNTTTCA ]
[+] EMBL CD083312 [ cgaggCAGAAATAAATTATCGTCTCTGTCAGTTGATAAGTGTTTAACTGTAACAAATCATTTGGTTTTGGAGGTTATTCTATTCATAGTTTACTTTAATTGTTTTGATTTTATTCCATGTATGCCACCATAGTGTCATCTTATTTGTTAAAGAACCACTACATGAAATACTGACTAACATGAAGATTCGCGTAATTCAAATATCTGGGAAAATTTACGAGTCTACGGAAAGCTTAGCTTATCAATTCATAAAAACACAC TACAAGTAAATTCACATAAACTGCATTAAACTTTTTCACGGTTATTTTTAATATTATGATGCCAAGCAGTTAAATATTTGCCAATTATACGTTACTTTCTAAAAAAATTTACAGCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAAC]
consensusID : consensus_10654#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 627 fasta sequence
[GGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA-GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTC-GGTTAGGAATGGTATCAATTCTGTTCTTGTCCTCTCTGGACCAAGCGCGAGAGCAATAGTAGTGAGTTTTCTGATGCTAGCCAGACGAGTTTGCATTTCCTCATTTCTTAACTCATCAATGAGGATAGCAATCGGGAAGAGACTCTCATCGGTCANATCTGCAGTCATCTTTCTG]
[+] EMBL CD146859 [GGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGACAGCGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCTATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGTTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGGACCTTATCCTCGTCGTA ]
[+] EMBL CD095626 [GGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGA ]
[-] EMBL CD171567 [ GTACNAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTT CCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGT ]
[+] EMBL CD116341 [ TGAAGGCGCGACGCAGTTCTACACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTC GGTTAGGAATGGTATCAATTCTGTTCTTGTCCTCTCTGGACCAAGCGCGAGAGCAATAGTAGTGAGTTTTCTGATGCTAGCCAGACGAGTTTGCATTTCCTCATTTCTTAACTCATCAATGAGGATAGCAATCGGGAAGAGACTCTCATCGGTCANATCTGCAGTCATCTTTCTG]
[+] EMBL CD200353 [ GCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGGTTAGGAATGGGATCAATTCTGTTCTTGTCCTCTCTGGACCAAGCGCGAGA ]
[-] EMBL CD125630 [ AGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTC GGTTAGGAATGGTATCAATTCTGTTCTTGTC ]
consensusID : consensus_10654#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[CTCGACGGCAAGATGGCACGAGGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAACATTTACTTCCTACGATAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTTAATTGACAGCATATATGGCAA]
[+] EMBL CD083379 [CTCGACGGCAAGATGGCACGAGGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAACATTTACTTCCTACGATAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTTAATTGACAGCATATATGGCAA]
consensusID : consensus_10654#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[TTTAGCTCCGCTGCTTGGCAAAGAGAATACATTAGAACATCTTCTTCCATTGCTGTTGATTCAATTAAAGGACGAAAATCCAGATGTCCGTTTGAATATTATATCCAATTTAGAGTGTGTAAATCAAATTATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGATACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTTGGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGATGTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGACTAGATTGGGCCAGTTCTCAA]
[+] EMBL CD180585 [TTTAGCTCCGCTGCTTGGCAAAGAGAATACATTAGAACATCTTCTTCCATTGCTGTTGATTCAATTAAAGGACGAAAATCCAGATGTCCGTTTGAATATTATATCCAATTTAGAGTGTGTAAATCAAATTATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGATACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTTGGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGATGTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGACTAGATTGGGCCAGTTCTCAA]
consensusID : consensus_10654#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[TCGTAGGAAGTAAATGTTTCTGCAATAACTCCGATCGACAAGACTGAGCTTCACCTAGTTGGTGAAGGGATGCCAAACAAATCATTCGACGAAGATAATTGGGATCGTAAGAGAGTTGTATGAGACGTGGGATGATTTGAGAACTGGCCCAATCTACTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATGGTATCAAT]
[+] EMBL CD096687 [TCGTAGGAAGTAAATGTTTCTGCAATAACTCCGATCGACAAGACTGAGCTTCACCTAGTTGGTGAAGGGATGCCAAACAAATCATTCGACGAAGATAATTGGGATCGTAAGAGAGTTGTATGAGACGTGGGATGATTTGAGAACTGGCCCAATCTACTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATGGTATCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10654#0 CGTTTTTACCTGCAAATTAGTTTCACCAACCATTTCCCGAATGATAGGTAACAATGTTTT 60
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 ------------------------------------------------------------
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------------------------------------------------------
consensus_10654#0 CATAATCACAGATTCCCGAATATCAGGGGCTAGAGACGAAGCAAACTTCTTCAGTTTGCC 120
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 ------------------------------------------------------------
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------------------------------------------------------
consensus_10654#0 TGCAGCCGCTGCACGAACTTCACCTTCTGGATCTTTGAGCAAAATCTGGTAAACGTCTAC 180
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 ------------------------------------------------------------
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------------------------------------------------------
consensus_10654#0 CAAGTGCTGTCCAGCAAGTTGGGGTTTTACTGCAGCCTGTAGATCAGTAATGTGGTCAGC 240
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 ------------------------------------------------------------
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------------------------------------------------------
consensus_10654#0 TAATTGATAACGGACTCGCCAAGATTTATCTTCTGCGGCTCCCCGTATAAGAGGAATGAT 300
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 ---------------------------CTCCGAGGCCAAAATTCGGCACGAGGCAAATNT 33
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------------------------------------------------------
consensus_10654#0 GTGTGTTAAGACATCTTCAGTAGGAAGAACTTCAGCAAAATCTACTGACGCATTCACACC 360
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 ATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGAT 93
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------------------------------------------------------
consensus_10654#0 CAGTAATCGTACAGAGTCCTGATCATCTTGGGAAAGAGGAGGTAATAGCGGTAACAGGTC 420
consensus_10654#3 -------------------------------------------------GGTAACAGGTC 11
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 ACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTT 153
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------CCTCGAGCCAANAATTCGGCACGAGGCCAACGCTATTTCTAAAAGCAC 48
consensus_10654#0 CGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGC 480
consensus_10654#3 CGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGC 71
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 GGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGAT 213
consensus_10654#4 ------------------------------------------------CTCGACGGCAAG 12
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 TGGTAATTAAATAAGCAACTAAATTAAATATAGGCATTTAAATAGTGGTTCGGTGACATT 108
consensus_10654#0 ACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGC 540
consensus_10654#3 ACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGC 131
consensus_10654#6 ---TCGTAGGAAGTAAATGTTTCTGCAATAACTCCGATCGA---CAAGACTGAGCTTCAC 54
consensus_10654#1 GTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTT-TG- 271
consensus_10654#4 ATG-GCACGAGGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTT-TG- 69
consensus_10654#5 --------------------------------------------TTTAGCTCCGCTGCT- 15
consensus_10654#2 TGGCAGGTTTCACTGTAGTCAATTATTACCTATAAACTGCTAATTTAGTTTTGGTCATTT 168
*
consensus_10654#0 ACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAG----CCCACAAGCAGAAG 596
consensus_10654#3 ACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAG----CCCACAAGCAGAAG 187
consensus_10654#6 CTAGTTGGTGAAGGGATGCCA--AACAAATCAT-------------TCGACGAAGATAAT 99
consensus_10654#1 -----GAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCT----CATACAACTCTCTT 322
consensus_10654#4 -----GAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCT----CATACAACTCTCTT 120
consensus_10654#5 -----TGGCAAAGAGAATACATTAGAACATCTTCTTCCATTG----CTGTTGATTCAATT 66
consensus_10654#2 CAGTTTTCTAGACCAAGATTATTTTACTGCCTTCCTAAACCGAAAGTTTTCGATACAGTT 228
* *
consensus_10654#0 TGCGGCTAGTAAACCA------GTCACCTGT--CGC-CAAACGCTTAATCAGTGGGAGAA 647
consensus_10654#3 TGCGGCTAGTAAACCA------GTCACCTGT--CGC-CAAACGCTTAATCAGTGGGAGAA 238
consensus_10654#6 TG-GGATCGTAAGAGA------GTTGTATGAGACGT-GGGATGATTTGAGAACTGGCCCA 151
consensus_10654#1 ACGATCCCAATTATCTT----CGTCGAATGATTTGT-TTGGCATCCCTTCACCAACTAGG 377
consensus_10654#4 ACGATCCCAATTATCTT----CGTCGAATGATTTGT-TTGGCATCCCTTCACCAACTAGG 175
consensus_10654#5 A-AAGGACGAAAATC---------CAGATG-TCCGT-TTGA-ATATTATATCCAATTTAG 113
consensus_10654#2 GTCTGAACTCCTACTTCATGGCGTTACAGTTTTCGTGTTAATGTCAAATGATGTTTGTTA 288
*
consensus_10654#0 AGTGAGTTTCCAAATCCACCAATTNTGAGTTA----TTATTGATCACATTTCGTTATCAA 703
consensus_10654#3 AGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAG 298
consensus_10654#6 ATCTA--CTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAG 209
consensus_10654#1 TGAAG----CTCAGTCTTGTCGATCGGAGTTAT-TGCAGA-----AACATTTACTTCCTA 427
consensus_10654#4 TGAAG----CTCAGTCTTGTCGATCGGAGTTAT-TGCAGA-----AACATTTACTTCCTA 225
consensus_10654#5 AGTGT----GTAAATCAAATT-ATGGGAATTAC-CCAACTTAGTCAAAGTCTACTTCCTG 167
consensus_10654#2 TTGACGTATTTGAATTCAGAGACCAGAACATCTCTTTAGCTCTTCAGAAATAAATTATCG 348
* * * *
consensus_10654#0 GTCTGGTGTAGATACGAGTAGCAACGCCTGCAGACTTCAATATGTTGGAGGGATTTGAGG 763
consensus_10654#3 CTTTATCCCGCACA---ACCGTTTCTTCAGCAGA-TGCAAGTCCTTCCAAGGGTGGTAGA 354
consensus_10654#6 CTTTATCCCGCACA---ACCGTTTCTTCAGCAGA-TGCAAGTCCTTCCAAGGGTGGTAGA 265
consensus_10654#1 CGATAGTTCAACTGGGTCAAGATCCTGTACCAAA----TGTTCGTTTTAAAGTTGGTCAA 483
consensus_10654#4 CGATAGTTCAACTGGGTCAAGATCCTGTACCAAA----TGTTCGTTTTAAAGTTGGTCAA 281
consensus_10654#5 CCATTGTTGAATTGGCCAGTGATACAAAGTGGCG----TGTTCGTCT-AGCAATAATTGA 222
consensus_10654#2 TCTCTGT-CAGTTGATAAGTGTTTAACTGTAACAAATCATTTGGTTTTGGAGGTTATTCT 407
* * *
consensus_10654#0 AAACAATTACGTGATTTGCATAAAAACGAGAATCCCAGATATTTACTACAATGACATGCT 823
consensus_10654#3 AGACAATG----GACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAAT-TGTT 409
consensus_10654#6 AGACAATG----GACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAAT-TGTT 320
consensus_10654#1 ATTTTG------GGCAAAATTGG--TCATCTTCTGGATGCATCAACTATACAGACATTTG 535
consensus_10654#4 ATTTTG------GGCAAAATTGG--TCATCTTCTGGATGCATCAACTATACAGACATTTG 333
consensus_10654#5 GTATAT------GCCACTATTAG--CCA------------GTCAACTTGGTTTGCAATGT 262
consensus_10654#2 ATTCATA-----GTTTACTTTAA--TTGTTTTGATTTTATTCCATGTATGCCACCATAGT 460
* *
consensus_10654#0 ACGGGGATATTCCATACATTTCTA-AGCCCGAAAAGAAACCCCATATTAATCTTAGTAGA 882
consensus_10654#3 -TGGCCAT-CTCCCTAAGTACCTC-ATCCTCG-------TCGTATAT-GGTGTCGGTTAG 458
consensus_10654#6 -TGGCCAT-CTCCCTAAGTACCTC-ATCCTCG-------TCGTATAT-GGTGTCGGTTAG 369
consensus_10654#1 TTAAACCAACT-TTAGAAAAACTG-GGCTCTGAT-GCAGATCCAGAT-GTTGTTTATTAT 591
consensus_10654#4 TTAAACCAACT-TTAGAAAAACTG-GGCTCTGAT-GCAGATCCAGAT-GTTGTTTATTAT 389
consensus_10654#5 TTTAACGAGCGACTCACAAATTTA-TGCTTGGGT-TGGCTAGTAGAC-GATGTATACGCT 319
consensus_10654#2 GTCATCTTATTTGTTAAAGAACCACTACATGAAATACTGACTAACATGAATATTCGCGTA 520
* * * * *
consensus_10654#0 GAATGAATATCCTGGAATTTGTAGGGAATTCTTGGGTGAGAAACTAGGTGCAAGTGCTCG 942
consensus_10654#3 GAATGG-TATC---AATTCTGTTCTTGTCCTCTCTGGACCAAGC---GCGAGAGCAATAG 511
consensus_10654#6 GAATGG-TATC---AAT------------------------------------------- 382
consensus_10654#1 GCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCC 651
consensus_10654#4 GCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCC 449
consensus_10654#5 GTGCGTGAAGC-----AGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGA--CT 372
consensus_10654#2 ATTCAAATATCTGGGAAAATTTACGAGTCTACGGAAAGCTTAG---CTTATCAATTCATA 577
* *
consensus_10654#0 CAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAA 1002
consensus_10654#3 TAGTGAGTTTTCTGATGCTAGCCAGACGAGTTTGCATTTCCTCATTTCTTAACTCATCAA 571
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 ATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGACAG 711
consensus_10654#4 ATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTTAATTGACAG 509
consensus_10654#5 AGATTGGGCCAGTTCTCAA----------------------------------------- 391
consensus_10654#2 AAAACACACTTACAGTAAATTCACATANACTGCATTAAACTNTTTCACGGTTATTTTTAA 637
consensus_10654#0 GGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAA 1062
consensus_10654#3 TGAGGATAG----CAATCGGGA-----AGAGACTCTCATCGGTCANATCTG--CAGTCAT 620
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 CATATATGGCACCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTT 771
consensus_10654#4 CATATATGGCAA------------------------------------------------ 521
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 TAT-TATGATGCCAAGCAGTTAAATATTTGCCAATTATACGTTACTTTCTAAAAAAATTT 696
consensus_10654#0 TT-GTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATG 1121
consensus_10654#3 CT-TTCTG---------------------------------------------------- 627
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 GT-GTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTG 830
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ACAGCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATC 756
consensus_10654#0 GTATCAATT--------------------------------------------------- 1130
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 CATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGAT 890
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 CCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAAC------- 809
consensus_10654#0 ------------------------------------------------------------
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 GAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCT 950
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------------------------------------------------------
consensus_10654#0 ------------------------------------------------------------
consensus_10654#3 ------------------------------------------------------------
consensus_10654#6 ------------------------------------------------------------
consensus_10654#1 TTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCTTTTCTTTTTCATTTAATAAAACGT 1010
consensus_10654#4 ------------------------------------------------------------
consensus_10654#5 ------------------------------------------------------------
consensus_10654#2 ------------------------------------------------------------
consensus_10654#0 -----------------------------
consensus_10654#3 -----------------------------
consensus_10654#6 -----------------------------
consensus_10654#1 CGGANTCCATTTAAAAAAAAAAAAAAAAA 1039
consensus_10654#4 -----------------------------
consensus_10654#5 -----------------------------
consensus_10654#2 -----------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||