|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 761 fasta sequence
[TAGCTTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA-GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC-GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC-TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAATAAAGCTTG]
[+] EMBL CD133043 [TAGCTTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATCAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGNTAACAACTACATTGANCAGGCTGTACGTCATGTTCAACTTCCAC AGGTATACTTAGGAAag ]
[-] EMBL CD162620 [ AGCTTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGG ]
[+] EMBL CD189726 [ TTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGANCAGGCTGTACGTCATGTTCAACTTCC ]
[+] EMBL CD155311 [ ACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAG ]
[+] EMBL AI976209 [ GAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGAC ]
[+] EMBL SMAA18471 [ GCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGC AAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCAGGAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCCGGATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAACCTATGAAGTTTTGCGATGGACTCATGA ]
[+] EMBL BG931640 [ tTCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAANAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCA ]
[+] EMBL CD155305 [ GGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTCCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGAGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACAT ]
[+] EMBL CD065593 [ cACGGAACTTTATAAAAGCTGGAGTG TTAAG TGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGA ]
[-] EMBL CD186250 [ GCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATCAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCAT ]
[+] EMBL AW017058 [ TAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCAC ]
[-] EMBL CD135984 [ CTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTCAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAAT ]
[-] EMBL CD135970 [ TCGCGCAAGCA GAATCACTGAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATCCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAAT ]
[-] EMBL CD135935 [ ATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGTAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAAT ]
[+] EMBL CD135993 [ ATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAGCCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCGTATTCTGAAAACAAGATGTAATTAATTTTACAA ]
[-] EMBL CD131356 [ TTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAATAAAGC ]
[-] EMBL CD135932 [ GTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAAT ]
[+] EMBL SM644 [ nAAAAAAGGTCCACGGAANCCTTTGGCTGACANCGTCACATTTTTGNTCGCTAAAGAAGANGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAATAAAGCTTG]
consensusID : consensus_10656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 106 fasta sequence
[ATTGATANGGNTGTACGTCATGTTCAACTTCCACAAGGTATACTAGGAATCAANGTCAAAATTATGTNGGNTCACGATAGTTCCGGCAAAAAGGTCCACGGNANCC]
[+] EMBL SM419 [ATTGATANGGNTGTACGTCATGTTCAACTTCCACAAGGTATACTAGGAATCAANGTCAAAATTATGTNGGNTCACGATAGTTCCGGCAAAAAGGTCCACGGNANCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10656#0 TAGCTTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGG 60
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 GGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATG 120
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 AGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCC 180
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 GTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTT 240
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 CACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTA 300
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 CCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCAG 360
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 AATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATAC 420
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 TCCGATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTA 480
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 AAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATC 540
consensus_10656#1 ------------------------------------------------------------
consensus_10656#0 CAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATACTAG 600
consensus_10656#1 --------------ATTGATANGGNTGTACGTCATGTTCAACTTCCACAAGGTATACTAG 46
***** * ** ***********************************
consensus_10656#0 GAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAAC 660
consensus_10656#1 GAATCAANGTCAAAATTATGTNGGNTCACGATAGTTCCGGCAAAAA-GGTCCACGGNANC 105
******* ************* ** ********************* ********* * *
consensus_10656#0 CTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCAT 720
consensus_10656#1 C----------------------------------------------------------- 106
*
consensus_10656#0 ATTCTGAAAACAAGATGTAATTAATTTTACAATAAAGCTTG 761
consensus_10656#1 -----------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||