These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 866 fasta sequence [ATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT-TCCA-GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC] [+] EMBL CD094937 [ATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAG ] [+] EMBL CD113307 [ATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAAAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAA ] [+] EMBL CD129987 [ TTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATNCAAATGTCTAGGTTCTACTCGAGTGAAAAC AAAGACAAGTCAATTGAGTGCCTA ] [-] EMBL CD198790 [ taccagccaCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGtat ] [-] EMBL CD148023 [ TGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGA ] [-] EMBL CD151660 [ CACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTGACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGATAT TCCA GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC] [-] EMBL CD151654 [ TTCCGGTATCATATCANAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAGAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT TCCA GGTATAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC] [-] EMBL CD151716 [ ATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTACCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAGATGGTCCTAGTGATGGCGCTAT TCCA GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGCTGAAGTTCTTTGCAAAATCCC] [-] EMBL CD151674 [ AGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCACATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAGATGGTCCTAGTGATGGCGCTATATCCA GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC] [-] EMBL CD151721 [ AAGTCAATTGAGTGCCTACTGATGCTGATGGCAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAGACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAA TACA GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC] [+] EMBL CD120444 [ GAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT TCCA GGTGAAACCCTAACCGACCAGGTTG ] [+] EMBL CD120489 [ GAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT TCCA GGTGAAACCCTAACCGACCAGGTTG ] [+] EMBL CD164187 [ CACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT CCAAGGGCCAAACCC ] [+] EMBL CD164166 [ CACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGT ] [+] EMBL CD182091 [ CACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGT ] [-] EMBL CD124840 [ ACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGT ] [+] EMBL CD182045 [ ACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAG ] consensusID : consensus_10662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence [GTGATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAGTAACTTTTGAGTCTTCTCTAACTTTTGTTAGATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGTGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCG] [+] EMBL CD095031 [GTGATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAGTAACTTTTGAGTCTTCTCTAACTTTTGTTAGATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGTGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCG] [+] EMBL CD094657 [GTGATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCACGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAGTAACTTTTGAGTCTTCTCTAACTTTTGTTAGATGCGCTGGAGATATTTGTTCCGGTATCATATCAAGATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGTGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10662#0 ---ATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTA 57 consensus_10662#1 GTGATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTA 60 ********************************************************* consensus_10662#0 CCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAA 117 consensus_10662#1 CCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAA 120 ************************************************************ consensus_10662#0 GCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTT 177 consensus_10662#1 GCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTT 180 ************************************************************ consensus_10662#0 GGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGAT 237 consensus_10662#1 GGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGAT 240 ************************************************************ consensus_10662#0 GCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAA------------------- 278 consensus_10662#1 GCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAGTAACTTTTGAGTCTTCTC 300 ***************************************** consensus_10662#0 -------------ATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTT 325 consensus_10662#1 TAACTTTTGTTAGATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTT 360 *********************************************** consensus_10662#0 CTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCG 385 consensus_10662#1 CTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCG 420 ************************************************************ consensus_10662#0 AGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGG 445 consensus_10662#1 AGTGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGG 480 ** ********************************************************* consensus_10662#0 TTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTG 505 consensus_10662#1 TTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTG 540 ************************************************************ consensus_10662#0 TTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGA 565 consensus_10662#1 TTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCG----------- 589 ************************************************* consensus_10662#0 TTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGA 625 consensus_10662#1 ------------------------------------------------------------ consensus_10662#0 AAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACT 685 consensus_10662#1 ------------------------------------------------------------ consensus_10662#0 CTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAA 745 consensus_10662#1 ------------------------------------------------------------ consensus_10662#0 TTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTATTCCAGGTGAAACCC 805 consensus_10662#1 ------------------------------------------------------------ consensus_10662#0 TAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCC 865 consensus_10662#1 ------------------------------------------------------------ consensus_10662#0 C 866 consensus_10662#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||