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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 866 fasta sequence
[ATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT-TCCA-GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC]
[+] EMBL CD094937 [ATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAG ]
[+] EMBL CD113307 [ATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAAAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAA ]
[+] EMBL CD129987 [ TTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATNCAAATGTCTAGGTTCTACTCGAGTGAAAAC AAAGACAAGTCAATTGAGTGCCTA ]
[-] EMBL CD198790 [ taccagccaCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGtat ]
[-] EMBL CD148023 [ TGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGA ]
[-] EMBL CD151660 [ CACGAAATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTGACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGATAT TCCA GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC]
[-] EMBL CD151654 [ TTCCGGTATCATATCANAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAGAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT TCCA GGTATAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC]
[-] EMBL CD151716 [ ATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTACCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAGATGGTCCTAGTGATGGCGCTAT TCCA GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGCTGAAGTTCTTTGCAAAATCCC]
[-] EMBL CD151674 [ AGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAAACGAAACGAAAAATCACATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAGATGGTCCTAGTGATGGCGCTATATCCA GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC]
[-] EMBL CD151721 [ AAGTCAATTGAGTGCCTACTGATGCTGATGGCAATCGAGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGATTCGAGACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAA TACA GGTGAAACCCTAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCCC]
[+] EMBL CD120444 [ GAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT TCCA GGTGAAACCCTAACCGACCAGGTTG ]
[+] EMBL CD120489 [ GAGTAACCACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT TCCA GGTGAAACCCTAACCGACCAGGTTG ]
[+] EMBL CD164187 [ CACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTAT CCAAGGGCCAAACCC ]
[+] EMBL CD164166 [ CACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGT ]
[+] EMBL CD182091 [ CACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGT ]
[-] EMBL CD124840 [ ACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAGT ]
[+] EMBL CD182045 [ ACGAAAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACTCTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAATTACTTCAGATACTGGGACTGAAAATGGTCCTAG ]
consensusID : consensus_10662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence
[GTGATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAGTAACTTTTGAGTCTTCTCTAACTTTTGTTAGATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGTGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCG]
[+] EMBL CD095031 [GTGATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAGTAACTTTTGAGTCTTCTCTAACTTTTGTTAGATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGTGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTGTTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCG]
[+] EMBL CD094657 [GTGATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTACCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAAGCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTTGGATTAATGAAGAAGTTTGTTACTGATTCTCACGCTGGAGCTCAGGAAAAAGCTCTGGATGCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAGTAACTTTTGAGTCTTCTCTAACTTTTGTTAGATGCGCTGGAGATATTTGTTCCGGTATCATATCAAGATGTCTAGGTTCTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCGAGTGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGGTTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10662#0 ---ATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTA 57
consensus_10662#1 GTGATTTTTGAACTGCGCTGAGTGTTCAATATGTCGTCAGAAGATGATTGGTCAAAGTTA 60
*********************************************************
consensus_10662#0 CCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAA 117
consensus_10662#1 CCCACTCTGTCCAAAGTACAGCACAAGCTCTGGAACGCACGTGTGGCGGGATACGAAGAA 120
************************************************************
consensus_10662#0 GCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTT 177
consensus_10662#1 GCGTTCAAAATATTTTCAACAGAAACAAGTGGAAAAAGCCCTGTTTTTAACGAATATGTT 180
************************************************************
consensus_10662#0 GGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGAT 237
consensus_10662#1 GGATTAATGAAGAAGTTTGTTACTGATTCTCATGCTGGAGCTCAGGAAAAAGCTCTGGAT 240
************************************************************
consensus_10662#0 GCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAA------------------- 278
consensus_10662#1 GCTGTCTTAGCATACATAGAAACAGCTGCAGCAGCCACGAAGTAACTTTTGAGTCTTCTC 300
*****************************************
consensus_10662#0 -------------ATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTT 325
consensus_10662#1 TAACTTTTGTTAGATGCGCTGGAGATATTTGTTCCGGTATCATATCAAAATGTCTAGGTT 360
***********************************************
consensus_10662#0 CTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCG 385
consensus_10662#1 CTACTCGAGTGAAAACAAAAGACAAGTCAATTGAGTGCCTACTGATGCTGATAGAAATCG 420
************************************************************
consensus_10662#0 AGCGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGG 445
consensus_10662#1 AGTGTCATGAATTAGTAATAGAAGAGCTCATAAAAGGTTTATCAACTAAAAATCCAAAGG 480
** *********************************************************
consensus_10662#0 TTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTG 505
consensus_10662#1 TTGTTGTCGGAAGCTTACAGACGCTTCGTGAAGCTCTAAATCTTTTTGGCCCAACTGTTG 540
************************************************************
consensus_10662#0 TTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCGAGACCAAGGGA 565
consensus_10662#1 TTCCGATCAAACCTCTTTTTAAAGAGTTTGGACGACTACTTGATGATCG----------- 589
*************************************************
consensus_10662#0 TTCGAAACGAAACGAAAAATCTCATTGTTGAGGTCTACAGATGGATAGGAGTAACCACGA 625
consensus_10662#1 ------------------------------------------------------------
consensus_10662#0 AAGACTTATTAAAGGATATCAAACCAGTTGTGATGACTGAGTTATGTGAATTATTTAACT 685
consensus_10662#1 ------------------------------------------------------------
consensus_10662#0 CTATTCCACCCGAAAAACCTGTTCGATTGAGATATTTACGCAGTCAAAAACCTAAAGAAA 745
consensus_10662#1 ------------------------------------------------------------
consensus_10662#0 TTACTTCAGATACTGGGACTGAAAATGGTCCTAGTGATGGCGCTATTCCAGGTGAAACCC 805
consensus_10662#1 ------------------------------------------------------------
consensus_10662#0 TAACCGACCAGGTTGATTTAGATGATATGATTACTCCTGTTGAAGTTCTTTGCAAAATCC 865
consensus_10662#1 ------------------------------------------------------------
consensus_10662#0 C 866
consensus_10662#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||