These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 924 fasta sequence [CTGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT-AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC-TAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCC-ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGGACAGTATCTACCTGGACAAC] [+] EMBL CD152370 [CTGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAGAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGT ] [+] EMBL CD152237 [ TGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATAGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCCACAAGTCTTTCCGAAACCATCCGTCCCTAATCGAACTGAAACATCTTATGCTTAACGTTGTTAACCCTTTTCCT ] [+] EMBL CD152258 [ TGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGCTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAGTACCCAGTGTAAAGATTGAAGATTTCTGCACTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCC ] [+] EMBL CD152268 [ TGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAG ] [+] EMBL CD152286 [ TGAACTAACTCAATTGTGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGACTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAA ] [+] EMBL CD152373 [ TGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGCTAAAATTAGTCGATTATTCACCAGATCTAGTTCAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATTAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAGTACCCAGTGT AAGATTGAAGATTTCT ] [+] EMBL CD160105 [ GTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTGTCAGATCAACAAGTCTTTCCGAAAGCATCCGTC ] [-] EMBL CD152214 [ GAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTCCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCC ] [-] EMBL CD152229 [ ATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCC ] [-] EMBL CD152206 [ AAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCC ] [-] EMBL CD152175 [ TATCTGTGCGTGAACTTATTCAAGAAAATTTAAACATACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATCGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCC ] [-] EMBL CD119236 [ TACCCAGTGT AAGATTGAAGATTTTTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTGTCCAAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAATCGTGTTAACCCTGTTCCTCCTGCTCATCGTCAAGTTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAA ] [+] EMBL CD189897 [ TTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGG ] [-] EMBL CD160273 [ TCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGGACAGTATCTACCTGGACAAC] [-] EMBL CD160352 [ CCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGGACAGTATCTACCTGGACAAC] [-] EMBL CD160088 [ CCGGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCCAATGAGGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGGACAGTATCTACCTGGACAAC] [-] EMBL CD160309 [ AAGTTCCAATCCCAATACCAACGATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGAAGCCTCCAAATGCATCATTTTCCTCCCCTAGCATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGCTGGTCTTCAGGGACAGTATCTACCTGGACAAC] [+] EMBL BG931136 [ gTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGg ] consensusID : consensus_10672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [GAACTTGAGGATGAGCAGGAGGAACAGGGTTAACACGGTTGGCATAAGATGGTTCAGGTCGAGTAGGGACTGAATAAAAAACAACAGAAAATAAAATACTATGTGTTAGCTAATTTCAAATAAAATGATCAGCTATTGTATAAGATTCCGTTAGTTTTATCTTTCATCAATCACCTACAATTCATAATGTTTTTACATTAAATTATATGAAGAAGCTTTAATAAGAAGTCAGTAGGTAGATATGGCAAACAGATAGATTGAACATCAGGCAAGGGAATTACATAATGAGTTCTAGTGAAGTTTAATAAAATTTGATGNNCTATTATGTTGTTTCTTTTTG] [+] EMBL CD158084 [GAACTTGAGGATGAGCAGGAGGAACAGGGTTAACACGGTTGGCATAAGATGGTTCAGGTCGAGTAGGGACTGAATAAAAAACAACAGAAAATAAAATACTATGTGTTAGCTAATTTCAAATAAAATGATCAGCTATTGTATAAGATTCCGTTAGTTTTATCTTTCATCAATCACCTACAATTCATAATGTTTTTACATTAAATTATATGAAGAAGCTTTAATAAGAAGTCAGTAGGTAGATATGGCAAACAGATAGATTGAACATCAGGCAAGGGAATTACATAATGAGTTCTAGTGAAGTTTAATAAAATTTGATGNNCTATTATGTTGTTTCTTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10672#0 CTGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCA 60 consensus_10672#1 ------------------------------------------------------------ consensus_10672#0 TCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACT 120 consensus_10672#1 -----------GAACTTGAGGATGAGCAGGAGGAACAGGGTTAACA-CGGTTGGCATAAG 48 ** * * *** * ** * * * ** * * *** * ** consensus_10672#0 ATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAA 180 consensus_10672#1 ATGGTTCAGGTCGAGTAGGGACTGAATAAAAAACAACA------------GAAAATAAAA 96 ** * * * * * * *** * * *** * ** * **** consensus_10672#0 TGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAA-ACAAGAAAGTTTATTAAAT 239 consensus_10672#1 TACTATGTGTTAGCTAATTTCAAATAAAATGATCAGCTATTGTATAAGATTCCGTTAGTT 156 * *** *** * ** ** * ** * * * * * * * *** * consensus_10672#0 G-ACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAA 298 consensus_10672#1 TTATCTTTCATCAATCACC--TACAATTCATAATGT-TTTTACATTAAATTATATGAAGA 213 * * * *** * ** ** ** ** * * *** * * * ** * consensus_10672#0 AGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGT 358 consensus_10672#1 AGCTTTAATAAGAA----------GTCAGTAGGTAGATATG--GCAAACAGATAGATTGA 261 ** ** * * ** * * * ** * *** *** * * * ** consensus_10672#0 TCGTGATGCCACGAAATTTTACGCTGAGCT-TACTGAGATTTGTGTGAATACCCAGTGTA 417 consensus_10672#1 ACATCAGGCAAGGGAATTACATAATGAGTTCTAGTGAAGTTTA-ATAAA-ATTTGATGNN 319 * * * ** * * **** * **** * ** *** *** * ** * ** consensus_10672#0 AGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCG 477 consensus_10672#1 CTATTATGTTGTTTCTTTTTG--------------------------------------- 340 *** ** ** consensus_10672#0 CAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCC 537 consensus_10672#1 ------------------------------------------------------------ consensus_10672#0 CTACTCGACCTGAACCATCTTATGCTAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTC 597 consensus_10672#1 ------------------------------------------------------------ consensus_10672#0 AAGTTCCAATGCCAATACCAACAATCCCCATGATGAATAATAACACATATCCGATGCCTC 657 consensus_10672#1 ------------------------------------------------------------ consensus_10672#0 CACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGG 717 consensus_10672#1 ------------------------------------------------------------ consensus_10672#0 CTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAA 777 consensus_10672#1 ------------------------------------------------------------ consensus_10672#0 ATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTG 837 consensus_10672#1 ------------------------------------------------------------ consensus_10672#0 CTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTC 897 consensus_10672#1 ------------------------------------------------------------ consensus_10672#0 TTCAGGGACAGTATCTACCTGGACAAC 924 consensus_10672#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||