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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 924 fasta sequence
[CTGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT-AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC-TAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCC-ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGGACAGTATCTACCTGGACAAC]
[+] EMBL CD152370 [CTGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAGAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGT ]
[+] EMBL CD152237 [ TGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATAGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCCACAAGTCTTTCCGAAACCATCCGTCCCTAATCGAACTGAAACATCTTATGCTTAACGTTGTTAACCCTTTTCCT ]
[+] EMBL CD152258 [ TGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGCTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAGTACCCAGTGTAAAGATTGAAGATTTCTGCACTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCC ]
[+] EMBL CD152268 [ TGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAG ]
[+] EMBL CD152286 [ TGAACTAACTCAATTGTGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGACTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAA ]
[+] EMBL CD152373 [ TGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCATCGAACAGCTAAAATTAGTCGATTATTCACCAGATCTAGTTCAAAAGCTATTGACGTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATTAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAGTACCCAGTGT AAGATTGAAGATTTCT ]
[+] EMBL CD160105 [ GTACTATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTGTCAGATCAACAAGTCTTTCCGAAAGCATCCGTC ]
[-] EMBL CD152214 [ GAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTCCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCC ]
[-] EMBL CD152229 [ ATTTACAAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCC ]
[-] EMBL CD152206 [ AAATTGCTACTGATATGCTTGAGGAAAAAATGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAAACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCC ]
[-] EMBL CD152175 [ TATCTGTGCGTGAACTTATTCAAGAAAATTTAAACATACAAGAAAGTTTATTAAATGACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAAAGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGTTCGTGATGCCACGAAATTTTACGCTGAGCTTACTGAGATTTGTGTGAATACCCAGTGT AAGATCGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCC ]
[-] EMBL CD119236 [ TACCCAGTGT AAGATTGAAGATTTTTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTGTCCAAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAATCGTGTTAACCCTGTTCCTCCTGCTCATCGTCAAGTTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAA ]
[+] EMBL CD189897 [ TTAATGTCTGATATCGCAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGG ]
[-] EMBL CD160273 [ TCTTTCCGAAACCATCCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGGACAGTATCTACCTGGACAAC]
[-] EMBL CD160352 [ CCGTCCCTACTCGACCTGAACCATCTTATGC TAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGGACAGTATCTACCTGGACAAC]
[-] EMBL CD160088 [ CCGGCTCATCCTCAAGTTCCAATGCCAATACCAACAATCCCCAATGAGGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTCTTCAGGGACAGTATCTACCTGGACAAC]
[-] EMBL CD160309 [ AAGTTCCAATCCCAATACCAACGATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGAAGCCTCCAAATGCATCATTTTCCTCCCCTAGCATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTGCTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGCTGGTCTTCAGGGACAGTATCTACCTGGACAAC]
[+] EMBL BG931136 [ gTCCAATGCCAATACCAACAATCCCC ATGATGAATAATAACACATATCCGATGCCTCCACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGGCTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAAATGCATCATTTTCCTCCCCTAACATGg ]
consensusID : consensus_10672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence
[GAACTTGAGGATGAGCAGGAGGAACAGGGTTAACACGGTTGGCATAAGATGGTTCAGGTCGAGTAGGGACTGAATAAAAAACAACAGAAAATAAAATACTATGTGTTAGCTAATTTCAAATAAAATGATCAGCTATTGTATAAGATTCCGTTAGTTTTATCTTTCATCAATCACCTACAATTCATAATGTTTTTACATTAAATTATATGAAGAAGCTTTAATAAGAAGTCAGTAGGTAGATATGGCAAACAGATAGATTGAACATCAGGCAAGGGAATTACATAATGAGTTCTAGTGAAGTTTAATAAAATTTGATGNNCTATTATGTTGTTTCTTTTTG]
[+] EMBL CD158084 [GAACTTGAGGATGAGCAGGAGGAACAGGGTTAACACGGTTGGCATAAGATGGTTCAGGTCGAGTAGGGACTGAATAAAAAACAACAGAAAATAAAATACTATGTGTTAGCTAATTTCAAATAAAATGATCAGCTATTGTATAAGATTCCGTTAGTTTTATCTTTCATCAATCACCTACAATTCATAATGTTTTTACATTAAATTATATGAAGAAGCTTTAATAAGAAGTCAGTAGGTAGATATGGCAAACAGATAGATTGAACATCAGGCAAGGGAATTACATAATGAGTTCTAGTGAAGTTTAATAAAATTTGATGNNCTATTATGTTGTTTCTTTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10672#0 CTGAACTAACTCAATTATGCAACAAACTAGAATCAATTAAAACGGAAAGAAATGATCTCA 60
consensus_10672#1 ------------------------------------------------------------
consensus_10672#0 TCGAACAGTTAAAATTAGTCGATTATTCACCAGATCTAGTTAAAAAGCTATTGACGTACT 120
consensus_10672#1 -----------GAACTTGAGGATGAGCAGGAGGAACAGGGTTAACA-CGGTTGGCATAAG 48
** * * *** * ** * * * ** * * *** * **
consensus_10672#0 ATAGAGAACATAATGAAACAATTGATTTACAAATTGCTACTGATATGCTTGAGGAAAAAA 180
consensus_10672#1 ATGGTTCAGGTCGAGTAGGGACTGAATAAAAAACAACA------------GAAAATAAAA 96
** * * * * * * *** * * *** * ** * ****
consensus_10672#0 TGGTATCTGTGCGTGAACTTATTCAAGAAAATTTAAACAA-ACAAGAAAGTTTATTAAAT 239
consensus_10672#1 TACTATGTGTTAGCTAATTTCAAATAAAATGATCAGCTATTGTATAAGATTCCGTTAGTT 156
* *** *** * ** ** * ** * * * * * * * *** *
consensus_10672#0 G-ACTTACAAACAAAAGCTGATATGTTTTATGGTGCGTCCGATGGTAATTCAAAAGATAA 298
consensus_10672#1 TTATCTTTCATCAATCACC--TACAATTCATAATGT-TTTTACATTAAATTATATGAAGA 213
* * * *** * ** ** ** ** * * *** * * * ** *
consensus_10672#0 AGGACTATTGACAATGCTTAACCTGGCTGCAGATGAGTATTCTGCACTTACAGAAGCTGT 358
consensus_10672#1 AGCTTTAATAAGAA----------GTCAGTAGGTAGATATG--GCAAACAGATAGATTGA 261
** ** * * ** * * * ** * *** *** * * * **
consensus_10672#0 TCGTGATGCCACGAAATTTTACGCTGAGCT-TACTGAGATTTGTGTGAATACCCAGTGTA 417
consensus_10672#1 ACATCAGGCAAGGGAATTACATAATGAGTTCTAGTGAAGTTTA-ATAAA-ATTTGATGNN 319
* * * ** * * **** * **** * ** *** *** * ** * **
consensus_10672#0 AGATTGAAGATTTCTGCGCTGCACGTACTACTGAGAAAAATGAATTAATGTCTGATATCG 477
consensus_10672#1 CTATTATGTTGTTTCTTTTTG--------------------------------------- 340
*** ** **
consensus_10672#0 CAACAAATATAAGCCGAGTTCGTGTTTCAGATCAACAAGTCTTTCCGAAACCATCCGTCC 537
consensus_10672#1 ------------------------------------------------------------
consensus_10672#0 CTACTCGACCTGAACCATCTTATGCTAACCGTGTTAACCCTGTTCCTCCTGCTCATCCTC 597
consensus_10672#1 ------------------------------------------------------------
consensus_10672#0 AAGTTCCAATGCCAATACCAACAATCCCCATGATGAATAATAACACATATCCGATGCCTC 657
consensus_10672#1 ------------------------------------------------------------
consensus_10672#0 CACAACCATGGAATCCTCAAGGCTATCCTGTGATGCCTCAACCTTCACCATTTGGAATGG 717
consensus_10672#1 ------------------------------------------------------------
consensus_10672#0 CTCCTTATCCAGCAATGTATCCATTCTATGGCGCTTATCCTACAATGCCGATGCCTCCAA 777
consensus_10672#1 ------------------------------------------------------------
consensus_10672#0 ATGCATCATTTTCCTCCCCTAACATGATGCACCCTGCTCATTCAATGGGTGCTAATGGTG 837
consensus_10672#1 ------------------------------------------------------------
consensus_10672#0 CTTTTCCTAATGTTAGTGGAGGTATTACTGACCCACCTGCTCCCGCTGCTGGTGGTGGTC 897
consensus_10672#1 ------------------------------------------------------------
consensus_10672#0 TTCAGGGACAGTATCTACCTGGACAAC 924
consensus_10672#1 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||