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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2372 fasta sequence
[ACAAAATTCATCATCATTGGATATTACCTCTGCATCGTTAAACACTTGTAATTTCGTTGTTGTTGTTGATGATGACGGTGGTGGTGGTGGGGAAGGTGAAGGCGGTGGCCGTGCTGTTGACAATGTCAACGAACAAGGCGATGATGATGATGATTATCGTAACTATCAATCATTTGAAGATTTGAAGTCAATTTTAAAAGAAGAAGATGCTTTAAATGCGACAATTAACAGAATAGATAAAGTTAATGAAACTGCTGACCTTGACAATCATAACAACAACAAACCCAATACCAACGACGACGATAACAGGAAAAATAATAATGAAATGAATAGAATTTTAAATCATTTGGAAATGTTATCGATGAATTCAGAAAAACAAAGTAAACAATTCGAATACATATTAGACCAATTGAATGAAACGAAATTGAAACTTGAACGACTTGAACAAACACAATATGATATCATTGAACAGATAAATAATGTTAATTACCAAGGTTCACTAATACCGCCGCCTCCATCAACACAACCGTCTAACATTGTTACAATGACAGAATCTAATACGAATTTAGAACATTGGGAAATTAAATCTATTGAATTGTCTAATCAGATAATTTCACAATTGCGAACTGTTCAAGGAGACTTTTCACGTCGTTATTCAAAAATTTCTGAAAATATGAATAAAATTTTATCCAATGTACAAGATCCAAATCATTCAATCAAATCAAATATGTTACATAATTTAGAATCACGTATTAATACATTGCCAACTATAACATCAGATTGTGTTAGACGTGTACTACATGAAGAATTATTAAGAGTATTTTCAAATAATTTATCGCGAGTTGNTGAACCATTGCAACAATCTCTATTTAGTGTGTTAAAAGATCATTTATCTAC-TTACCAACGATGTTAACAGATAATGTTCAACGTACTTTACGTGAAAAGAATTTCACTACACAAATTGTACGATCTGCATCTGGAATATTGTCCACAGAACTGTCTAATGCTTATCGTGATTCATTGAATAAAATTTTTGTTCCAGCTTTAGAAAAATCCATTAAGAAATTATTCACAGATCTTAATAATCTTTTTCAACTTGGTACACAACAATATTTAAATCAAATTTCATCTCGTATTCAACCTCCATCTTTTGATACTACAAATTTTACTCCATTGATGAATCAAATATCATCTGTGATAAAATCAACTCTTAATGAAACATTGAAAGAAGTTGAAAAAAAATGTGGTAATTCTTCATCTCTTAAAATAAATCCATCATCAGATTCATGTACAACTAATACTATTGATCGTAATGATCATTATTCAGAAATAGTATATGACGATGTGAAGCATAAACAATCCAATTTAACAACATCGGATAAAACAGCTGTGAATAAAAAATCACAAAATCGTCATTTAAATAAGACTGGTAATGTCAATACTCCTCATGTTAGTAACAGTGGTAGCAATAGTAATAATAATAATAATCCTAATGTAAAGAATAAAATACAAACAACCAATGAGAATCCGCATCCATCGAACCTATATCCACAACAATCACTATCAACATTAACAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGTTCTGGTGATCATACAATTGGTCAAAATATTTTATTATCTTTAATTCATCAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCATGGACCCAGC-ATATTACACTTACTTAATACACGTCTTGATACTTTATTAAAATTAACAAATAATAATAATAACAAAATTACTAATTCATTACGTAATCGTGTTATTAAATTAAATCGTACAGTGAAATGTTTATTTAAAGAAATTTCATTATCTGATGATAAATAAAATAAAGACAATAATCATCAGTATACCGTTTAGTGTATGTTACGTTATGACAATAATAATAATAATAATGACAACTTTCTTTCTGTTTCTTTTTTCACCGCTTTCATTGTTACTATTCTCATCTGGTTTAGATTTTATTCTTGAGTACAGTAATAGAATAAAAAAAACTACATTTTTGAGGGTGGATGAAAAAGACCGGTTTCTTCTTTTACAATTCCACGTATATATATAAAGAGTATCTGTACATGTCATTATTATTATTGTTTTGGATACATTGAATACCAGAACTGAAGGAATTTCTAACGATTTCGAACTTTGTCAAATTCTCGTAATAATCTTCATAATAAGATTATTTGTG]
[+] EMBL CD169765 [ACAAAATTCATCATCATTGGATATTACCTCTGCATCGTTAAACACTTGTAATTTCGTTGTTGTTGTTGATGATGACGGTGGTGGTGGTGGGGAAGGTGAAGGCGGTGGCCGTGCTGTTGACAATGTCGACGAGCAAGGCGATGATGATGATGATTATCGTAACTATCAATCATTTGAAGATTTGAAGTCAATTTTAAAAGAAGAAGATGCTTTAAATGCGACAATTAACAGAATAGATAAAGTTAATGAAACTGCTGACCTTGACAATCATAACAACAACAAACCCAATACCAACGACGACGATAACAGGAAAAATAATAATGAAATGAATAGAATTTTAAATCATTTGGAAATGTTATCGATGAATTCAGAAAAACAAAGTAAACAATTCGAATACATATTAGACCAATTGAATGAAACGAAATTGAAACTTGAACGACTTGAACAAACACAATATGATATCATTGAACAGATAAATAATGTTAATTACCAAGGTTCACTAATACCGCCGCCTCCATCAACACAACCGTCTAACATTGNTACAATGACAGAATCTAATACCAATTTAAAACA ]
[+] EMBL CD155275 [ CGTTGTTGTTGTTGATGATGACGGTGGTGGTGGTGGGGAAGGTGAAGGCGGTGGCCGTGCTGTTGACAATGTCAACGAACAAGGCGATGATGATGATGATTATCGTAACTATCAATCATTTGAAGATTTGAAGTCAATTTTAAAAGAAGAAGATGCTTTAAATGCGACAATTAACAGAATAGATAAAGTTAATGAAACTGCTGACCTTGACAATTATAACAACAACAAACCCAATACCAACGACGACGATAACAGGAAAAATAATAATGAAATGAATAGAATTTTAAATCATTTGGAAATGTTATCGATGAATTCAGAAAAACAAAGTAAACAATTCGGATACATATTAGACCAATTGAATGAAACGAAATTGAAACTTGAACGACTTGAACAAACACAATATGATATCATTGAACAGATAAATAATGTTAATTACCAAGGTTCACTAATACCGCCGCCTCCATCAACACAACCGTCTAACATTGTTACAATGACAGAATCTAATACG ]
[+] EMBL CD071832 [ GTGAAGGCGGTGGCCGTGCTGTTGACAATGTCAACGAACAAGGCGATGATGATGATGATTATCGTAACTATCAATCATTTGAAGATTTGAAGTCAATTTTAAAAGAAGAAGATGCTTTAAATGCGACAATTAACAGAATAGATAAAGTTAATGAAACTGCTGACCTTGACAATCATAACAACAACAAACCCAATACCAACGACGACGATAACAGGAAAAATAATAATGAAATGAATAGAATTTTAAATCATTTGGAAATGTTATCGATGAATTCAGAAAAACAAAGTAAACAATTCGAATACATATTAGACCAATTGAATGAAACGAAATTGAAACTTGAACGACTTGAACAAACACAATATGATATCATTGAACAGATAAATAATGT ]
[+] EMBL CD154596 [ CTTGAACAAACACAATATGATATCATTGAACAGATAAATAATGTTAATTACCAAGGTTCACTAATACCGCCGCCTCCATCAACACAACCGTCTAACATTGTTACAATGACAGAATCTAATACGAATTTAGAACATTGGGAAATTAAATCTATTGAATTGTCTAATCAGATAATTTCACAATTGCGAACTGTTCAAGGAGACTTTTCACGTCGTTATTCAAAAATTTCTGAAAATATGAATAAAATTTTATCCAATGTACAAGATCCAAATCATTCAATCAAATCAAATATGTTACATAATTTAGAATCACGTATTAATACATTGCCAACTATAACATCAGATTGTGTTAGACGTGTACTACATGAAGAATTATTAAGAGTATTTTCAAATAATTTATCGCGAGTTGNTGAACCATTGCAACAATCTCTATTTAGTGTGTTAAAAGATCATTTATCTACATTACCAACGATGNTAACAGATAATGNTCAACGTACTTTACGTGAAAAGAATTTCACTACACAAATTGTACGATCT ]
[-] EMBL CD129860 [ TCACTAATACCGCCGCCTCCATCAACACAACCGTCTAACATTGTTACAATGACAGAATGTAATACGAATTTAGAACATTGGGAAATTAAATCTATTGAATTGTCTAATCAGATAATTTCACAATTGCGAACTGTTCAAGGAGACTTTTCACGTCGTTATTCAAAAATTTCTGAAAATATGAATAAAATTTTATCCAATGTACAAGATCCAAATCATTCAATCAAATCAAATATGTTACATAATTTAGAATCACGTATTAATACATTGCCAACTATAACATCAGATTGTGTTAGACGTGTACTACATGAAGAATTATTAAGAGTATTTTCAAATAATTTATCGCGAGTTGTTGAACCATTGCAACAATCTCTATTTAGTGTGTTAAAAGATCATTTATCTACATTACCAACGATGTTAACAGACAATGTTCAACGTACTTTACGTGAAAAGAATTTCACTACACAAATTGTACGATCTGCATCTGGAATATTGTCCACAGAACTGTCTAATGCTTATCGTGATTCATT ]
[+] EMBL CD069482 [ atgc cTACCAACGATGTTAACAGATAATGTTCAACGTACTTTACGTGAAAAGAATTTCACTACACAAATTGTACGATCTGCATCTGGAATATTGTCCACAGAACTGTCTAATGCTTATCGTGATTCATTGAATAAAATTTTTGTTCCAGCTTTAGAAAAATCCATTAAGAAATTATTCACAGATCTTAATAATCTTTTTCAACTTGGTACACAACAATATTTAAATCAAATTTCATCTCGTATTCAACCTCCATCTTTTGATACTACAAATTTTACTCCATTGATGAATCAAATATCATCTGTGATAAAATCAACTCTTAATGAAACATTGAAAGAAGTTGAAAAAAAATGTGGTAATTCTTCATCTCTTAAAATAAATCCATCATCAGATTCATGTACAACTAATACTATTGATCGTAATGATCATTATTCAGAAATAGTATATGACGATGTGAAGCATAAACAATCCAATTTAACAACATCGGATAAAACAGCTGTGAATAAAAAATCACAAAATCGTCATTTAAATAAGACTGGTAATGTCAATACTC ]
[+] EMBL CD080483 [ gagAAAATAAATCCATCATCAGATTCATGTACAACTAATACTATTGATCGTAATGATCATTATTCAGAAATAGTATATGACAATGTGAAGCATAAACAATCCAATTTAACAACATCGGATAAAACAGCTGTGAATAAAAAATCACAAAATCGTCATTTAAATAAGACTGGTAATGTCAATACTCCTCATGTTAGTAACAGTGGTAGCAATAGTAATAATAATAATAATCCTAATGTAAAGAATAAAATACAAACAACCAATGAGAATCCGCATCCATCGAACCTATATCCACAACAATCACTATCAACATTAACAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGTTCTGGTGATCATACAATTGGTCAAAATATTTTATTATCTTTAATTCATCAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCATGGACCCAGC ATATTACACTTACTTAATACACGTCTTGATACTTTATTAAAATT ]
[-] EMBL CD074395 [ ATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCATGGA CCAGCAATATTACACTTACTTAATACACGTCTTGATACTTTATTAAATTCAACAAATAATAATAATAACAAAATTACTAATTCATTACGTAATCGTGTTATTAAATTAAATCGTACAGTGAAATGTTTATTTAAAGAAATTTCATTATCTGATGATAAATAAAATAAAGACAATAATCATCAGTATACCGTTTAGTGTATGTTACGTTATGACAATAATAATAATAATAATGACAACTTTCTTTCTGTTTCTTTTTTCACCGCTTTCATTGTTACTATTCTCATCTGGTTTAGATTTTATTCTTGAGTACAGTAATAGAATAAAAAAAACTACATTTTTGAGGGTGGATGAAAAAGACCGGTTTCTTCTTTTACAATTCCACGTATATATATAAAGAGTATCTGTACATGTCATTATTATTATTGTTTTGGATACATTGAATACCAGAACTGAAGGAATTTCTAACGATTTCGAACTTTGTCAAATTCTCGTAATAATCTTCATAATAAGATTATTTGTG]
consensusID : consensus_10676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[ACAAAATTCATCATCATTGGATTACCTCTGCATCGTTAAACACTTGTAATTTCGTTGTTGTTGTTGATGATGACGGTGGTGGTGGTGGGGAAGGTGAAGGCGGTGGCCGTGCTGTTGACAATGTCAACGAACAAGGCGATGATGATGATGATTATCGTAACTATCAATCATTTGAAGATTTGAAGTCAATTTTAAAAGAAGAAGATGCTTTAAACGCGACAATTAACAGAATAGATAAAGTTAATGAAACTGCTGACCTTGACAATCATAACAACAACAAACCCAATACCAACGACGACGATAACAGGAAAAATAATAATGAAATGAATAGAATTTTAAATCATTTAGAAATGTTATCGATGAATTCAGAAAAACAAAGTAAACAATTCGAATACATATTAGACCAATTGAATGAAACGAAATTGAAACTTGAACGACTTGAACAAACACAATATGATATCATTGTTACAATGACAGAATCTAATACGAATTTAGAACATTGGGAAATTAAATCTATTGAATTGTCTAATCAGATAATTTCACAATTGCGAACTGTTCAAGGAGACTTTTCACGTCGTTATTCAAAAATTTCTGAAAATATG]
[+] EMBL CD169035 [ACAAAATTCATCATCATTGGATTACCTCTGCATCGTTAAACACTTGTAATTTCGTTGTTGTTGTTGATGATGACGGTGGTGGTGGTGGGGAAGGTGAAGGCGGTGGCCGTGCTGTTGACAATGTCAACGAACAAGGCGATGATGATGATGATTATCGTAACTATCAATCATTTGAAGATTTGAAGTCAATTTTAAAAGAAGAAGATGCTTTAAACGCGACAATTAACAGAATAGATAAAGTTAATGAAACTGCTGACCTTGACAATCATAACAACAACAAACCCAATACCAACGACGACGATAACAGGAAAAATAATAATGAAATGAATAGAATTTTAAATCATTTAGAAATGTTATCGATGAATTCAGAAAAACAAAGTAAACAATTCGAATACATATTAGACCAATTGAATGAAACGAAATTGAAACTTGAACGACTTGAACAAACACAATATGATATCATTGTTACAATGACAGAATCTAATACGAATTTAGAACATTGGGAAATTAAATCTATTGAATTGTCTAATCAGATAATTTCACAATTGCGAACTGTTCAAGGAGACTTTTCACGTCGTTATTCAAAAATTTCTGAAAATATG]
consensusID : consensus_10676#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 574 fasta sequence
[AATACTCCTCATGTTAGTAACAGTGGTAGCAATAGTAATAATAATAATAATCCTAATGTAAAGAATAAAATACAAACAACCAATGAGAATCCGCATCCATCGAACCTATATCCACAACAATCACTACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTAGATATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGTGATCATACAATTGGTCAAAATATTTTATTATCTTTAATTCAT-CAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCATGGACCAGCAATATTACACTAACATTAACAACAACAATAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGG]
[+] EMBL CD190447 [AATACTCCTCATGTTAGTAACAGTGGTAGCAATAGTAATAATAATAATAATCCTAATGTAAAGAATAAAATACAAACAACCAATGAGAATCCGCATCCATCGAACCTATATCCACAACAATCACTATCAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTAGATATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGTGATCATACAATTGGTCAAAATATTTTATTATCTTTAATTCAT CAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTT ]
[+] EMBL CD123857 [ cACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTAGATATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGTGATCATACAATTGGTCAAAATATTTTACTATCTTTAATTCAT CAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCATGGACCAGCAATATTACACTAACATTAACAACAACAATAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGG]
[-] EMBL CD123795 [ ACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTAGATATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGTGATCATACAATTGGCCAAAATATTTTATTATCTTTAATTCAC CAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCATGGACCAGCAATATTACACTAACATTAACAACAACA ]
[-] EMBL CD123853 [ cCTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTAGATATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGCGATCATACAATTGGTCAAAATATTTTATTATCTTTAATTCAC CAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCATGGACCAGCAATATTACACTAACATTAACAACAACA ]
[+] EMBL CD123827 [ CATGGTCGTCCTCGTCATTATCACCGAACCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTAGATATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGTGATCATACAATTGGTCAAAATATTTTATTATCTTTAATTCAC CAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGT ]
[-] EMBL CD123843 [ ATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGTGATCATACAATTGGTCAAAATATTTTATTATCTTTAATTCAT CAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATATTCAAGAAGCTATTCTTTGTGTTGAAATTGATGATCCTACTACATCAGTTCATGGGCCAGCCATATTTCCNTTACCTTTACCACCACca ]
[-] EMBL CD123845 [ tTTTAAATTATCCAATT AGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACTTAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCATGGACCAGCAATATTACACTAACATTAACAACAACA ]
consensusID : consensus_10676#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[CACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTATATATCTGGAATGATATTGAGGTGAATAAACTCTTCAAGTCTGTGGAGAATACACAATGGGGACAAAATATTATAATATCTAAAATACAAAAATAAAGTGTGGGGAGATAAATCGGCACAAGGGGATTTAAAACTTAAATATCTTCAAGAAGCCATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCGTGGACCAGCAATATTACACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTT]
[+] EMBL CD123858 [CACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTATATATCTGGAATGATATTGAGGTGAATAAACTCTTCAAGTCTGTGGAGAATACACAATGGGGACAAAATATTATAATATCTAAAATACAAAAATAAAGTGTGGGGAGATAAATCGGCACAAGGGGATTTAAAACTTAAATATCTTCAAGAAGCCATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCGTGGACCAGCAATATTACACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTT]
consensusID : consensus_10676#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 398 fasta sequence
[CACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTAGATATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGGGATCATACAATTGGGCCAAATATTCTATTATCTTTAAATCATCAAACAAGTCGTGGGGAGTTAACAGGTGCACTGTTGGATAAAAAACTCAAATTTTTTCAACAACCTATTCTTTGTCTTGAATTGGATGATCCTACTACATAAGTTCGTGGCCCACCTATTCTACGCTATCTTTTACCACCGCCACCC]
[+] EMBL CD123855 [CACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCTAATCGCTTAGTCGATGCTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTTCTCTTAGATATCTGTAATGATATTGATGTGAATAAACTTTTCAGTTCTGGGGATCATACAATTGGGCCAAATATTCTATTATCTTTAAATCATCAAACAAGTCGTGGGGAGTTAACAGGTGCACTGTTGGATAAAAAACTCAAATTTTTTCAACAACCTATTCTTTGTCTTGAATTGGATGATCCTACTACATAAGTTCGTGGCCCACCTATTCTACGCTATCTTTTACCACCGCCACCC]
[+] EMBL CD123852 [CACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTTTAATCG TTAa ]
consensusID : consensus_10676#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence
[GTATGTTACGGTATGGGCTTAATAATTATGAAAATGACAACTTTCCCTCTGTGTCCTTTTCACCGCTNTCAGTGTTACTAATCTCATCTGGGTTTAGAATTTAATCCTGAGTACAGTGATAGAGATTAAAAAAACTACATTTTTGAGGGTGGATGTAAAAAGAAACGGGTTCCTCCTTTACAAATCCACGTATATATATAAAGAGGAACTGGACATGGCAATAATAATAATGGTTTGGATACAATTGATACCAGAACTTGAGGAATTTCTAACGATTTCGAACTTTGTCAAATTCTCGTAATAATCTTCATAATAAGATTATTTGTGTACTTTGTTGTTTTTTTTGTTCCTTTTTTTTCCTTTTCTCGAATATAACTAATCATTAT]
[-] EMBL SMAA69933 [GTATGTTACGGTATGGGCTTAATAATTATGAAAATGACAACTTTCCCTCTGTGTCCTTTTCACCGCTNTCAGTGTTACTAATCTCATCTGGGTTTAGAATTTAATCCTGAGTACAGTGATAGAGATTAAAAAAACTACATTTTTGAGGGTGGATGTAAAAAGAAACGGGTTCCTCCTTTACAAATCCACGTATATATATAAAGAGGAACTGGACATGGCAATAATAATAATGGTTTGGATACAATTGATACCAGAACTTGAGGAATTTCTAACGATTTCGAACTTTGTCAAATTCTCGTAATAATCTTCATAATAAGATTATTTGTGTACTTTGTTGTTTTTTTTGTTCCTTTTTTTTCCTTTTCTCGAATATAACTAATCATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10676#0 ----------ACAAAATTCATCATCATTGGATATTACCTCTGCATCGTTAAACACTTGTA 50
consensus_10676#1 ----------ACAAAATTCATCATCATTGGAT--TACCTCTGCATCGTTAAACACTTGTA 48
consensus_10676#2 AATACTCCTCATGTTAGTAACAGTGGTAGCAATAGTAATAATAATAATAATCCTAATGTA 60
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 ATTTCGTTGTTGTTGTTGATGATGACGGTGGTGGTGGTGGGGAAGGTGAAGGCGGTGGCC 110
consensus_10676#1 ATTTCGTTGTTGTTGTTGATGATGACGGTGGTGGTGGTGGGGAAGGTGAAGGCGGTGGCC 108
consensus_10676#2 AAGAATAAAATACAAACAACCAATGAGAATCCGCATCCATCGAACCTATATCCACAACAA 120
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 -----------------------------------------------------GTATGTT 7
consensus_10676#0 GTGCTGTTGACAATGTCAACGAACAAGGCGATGATGATGATGATTATCGTAACTATCAAT 170
consensus_10676#1 GTGCTGTTGACAATGTCAACGAACAAGGCGATGATGATGATGATTATCGTAACTATCAAT 168
consensus_10676#2 TCACTACTAACATTAACAACAA------CAACAAC-ATCGTCGTCCTCGTCATTATCAAT 173
consensus_10676#3 ----CACTAACATTAACAACAA------CAACAAC-ATCGTCGTCCTCGTCATTATCAAT 49
consensus_10676#4 ----CACTAACATTAACAACAA------CAACAAC-ATCGTCGTCCTCGTCATTATCAAT 49
consensus_10676#5 ACGGTATGGGC-TTAATAATTATGAAAATGACAAC--TTTCCCTCTGTGTCCTTTTCACC 64
* * ** * * * * * ** * ***
consensus_10676#0 CATTTGAAGATTTGAAGTCAATTTTAAAAGAAGAAGATGCTTTAAATGCGACAATTAACA 230
consensus_10676#1 CATTTGAAGATTTGAAGTCAATTTTAAAAGAAGAAGATGCTTTAAACGCGACAATTAACA 228
consensus_10676#2 GAAGC-AAGATAAATTGACTCGTTTATTTGGACAAG----CTCAAGCGTT-CATTCGTTC 227
consensus_10676#3 GAAGC-AAGATAAATTGACTCGTTTATTTGGACAAG----CTCAAGCGTT-CATTCGTTC 103
consensus_10676#4 GAAGC-AAGATAAATTGACTCGTTTATTTGGACAAG----CTCAAGCGTT-CATTCGTTC 103
consensus_10676#5 GCTNTCAGTGTTACTAATCTCATCTGGGTTTAGAA-----TTTAATCCTG-AGTACAGTG 118
* * * * * * ** * **
consensus_10676#0 GAATAGATAAAGTTAATGAAACTGCTGACCTTGACAATCATAACAACAACAAACCCAATA 290
consensus_10676#1 GAATAGATAAAGTTAATGAAACTGCTGACCTTGACAATCATAACAACAACAAACCCAATA 288
consensus_10676#2 TAATCGCTTA-GTCGATG----CTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTT 282
consensus_10676#3 TAATCGCTTA-GTCGATG----CTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTT 158
consensus_10676#4 TAATCGCTTA-GTCGATG----CTCTGGAATTGGCTTTAGTTTCTACTGATCAACCACTT 158
consensus_10676#5 ATAGAGATTAAAAAAACTACATTTTTGAGGGTGGATGTAAAAAGAAACGGGTTCCTCCTT 178
* * * * * ** ** * * * *
consensus_10676#0 CCAACGACGACG-ATAACAGGAAAAATAATAATGAAATGAATAGAATTTTAA-ATCATTT 348
consensus_10676#1 CCAACGACGACG-ATAACAGGAAAAATAATAATGAAATGAATAGAATTTTAA-ATCATTT 346
consensus_10676#2 CTCTTA-----G-ATATCTGTAA---TGATATTGATGTGAATAAACTTTTCA-GTTCTG- 331
consensus_10676#3 CTCTTA-----T-ATATCTGGAA---TGATATTGAGGTGAATAAACTCTTCA-AGTCTGT 208
consensus_10676#4 CTCTTA-----G-ATATCTGTAA---TGATATTGATGTGAATAAACTTTTCA-GTTCTG- 207
consensus_10676#5 TACAAATCCACGTATATATATAAAGAGGAACTGGACATGGCAATAATAATAATGGTTTGG 238
*** ** * ** ** * * * * * *
consensus_10676#0 GGAAATGTTATCGATGAATTCAGAAAAACAAAGTAAACAATTCGAATACATATTAGACCA 408
consensus_10676#1 AGAAATGTTATCGATGAATTCAGAAAAACAAAGTAAACAATTCGAATACATATTAGACCA 406
consensus_10676#2 -GTGATCATAC-----AATTGGT-----CAAAATATTTTATT---ATCTTTAATTCATCA 377
consensus_10676#3 GGAGAATACAC-----AATGGGGA----CAAAATATTATAAT---ATCTAAAATACAAAA 256
consensus_10676#4 -GGGATCATAC-----AATTGGG-----CCAAATATTCTATT---ATCTTTAAATCATCA 253
consensus_10676#5 ATACAATTGATACCAGAACTTGA------GGAATTTCTAACG--ATTTCGAACTTTGTCA 290
* * ** * * * * * *
consensus_10676#0 ATTGAATGAAACGAAATTGAAACTTGAACGACTTGAACAAACACAATATGATATCATTGA 468
consensus_10676#1 ATTGAATGAAACGAAATTGAAACTTGAACGACTTGAACAAACACAATATGATATCATTG- 465
consensus_10676#2 ATTAAGT--TGTGGTGATTT-AACTGTTCAATTGGATTTAAAAC--TTAAATATCTTCAA 432
consensus_10676#3 ATAAAGTG-TGGGGAGATAA-ATCGGCACAAGGGGATTTAAAAC--TTAAATATCTTCAA 312
consensus_10676#4 AACAAGTCGTGGGGAGTTAACAGGTGCACTGTTGGATAAAAAAC--TCAAATTTTTTCAA 311
consensus_10676#5 AATTCTCGTAATAATCTTCATAATAAGATTATTTGTGT----ACTTTGTTGTTTTTTTTG 346
* * * * ** * * * *
consensus_10676#0 ACAGATAAATAATGTTAATTACCAAGGTTCACTAATACCGCCGCCTCCATCAACACAACC 528
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 GAAGCTA----------------------------------------------------- 439
consensus_10676#3 GAAGCCA----------------------------------------------------- 319
consensus_10676#4 CAACCTA----------------------------------------------------- 318
consensus_10676#5 TTCCTTTTTT-------------------------------------------------- 356
consensus_10676#0 GTCTAACATTGTTACAATGACAGAATCTAATACGAATTTAGAACATTGGGAAATTAAATC 588
consensus_10676#1 -----------TTACAATGACAGAATCTAATACGAATTTAGAACATTGGGAAATTAAATC 514
consensus_10676#2 -----------TTCTTTGTCTTGAATTTGAT--GATCCTACTACATCAGTTCAT-GGACC 485
consensus_10676#3 -----------TTCTTTGTCTTGAATTTGAT--GATCCTACTACATCAGTTCGT-GGACC 365
consensus_10676#4 -----------TTCTTTGTCTTGAATTGGAT--GATCCTACTACATAAGTTCGT-GGCCC 364
consensus_10676#5 -----------TTCCTTTTCTCGAATATAACTAATCATTAT------------------- 386
** **** * **
consensus_10676#0 TATTGAATTGTCTAATCAGATAATTTCACAATTGCGAACTGTTCAAGGAGACTTTTCACG 648
consensus_10676#1 TATTGAATTGTCTAATCAGATAATTTCACAATTGCGAACTGTTCAAGGAGACTTTTCACG 574
consensus_10676#2 AGCAATATTACACTAACATTAACAACAACAATAACATCGTCGTCCTCGTCATTATCAATG 545
consensus_10676#3 AGCAATATTACACTAACATTAACAACAACAACAACATCGTCGTCCTCGTCATTATCAATG 425
consensus_10676#4 ACCTATTCTACGCTATCTTTTACCACCGCCACCC-------------------------- 398
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TCGTTATTCAAAAATTTCTGAAAATATGAATAAAATTTTATCCAATGTACAAGATCCAAA 708
consensus_10676#1 TCGTTATTCAAAAATTTCTGAAAATATG-------------------------------- 602
consensus_10676#2 AAGCAAGATAAATTGACTCGTTTATTTGG------------------------------- 574
consensus_10676#3 AAGCAAGATAAATTGACTCGTTTATTT--------------------------------- 452
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TCATTCAATCAAATCAAATATGTTACATAATTTAGAATCACGTATTAATACATTGCCAAC 768
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TATAACATCAGATTGTGTTAGACGTGTACTACATGAAGAATTATTAAGAGTATTTTCAAA 828
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TAATTTATCGCGAGTTGNTGAACCATTGCAACAATCTCTATTTAGTGTGTTAAAAGATCA 888
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TTTATCTACTTACCAACGATGTTAACAGATAATGTTCAACGTACTTTACGTGAAAAGAAT 948
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TTCACTACACAAATTGTACGATCTGCATCTGGAATATTGTCCACAGAACTGTCTAATGCT 1008
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TATCGTGATTCATTGAATAAAATTTTTGTTCCAGCTTTAGAAAAATCCATTAAGAAATTA 1068
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TTCACAGATCTTAATAATCTTTTTCAACTTGGTACACAACAATATTTAAATCAAATTTCA 1128
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TCTCGTATTCAACCTCCATCTTTTGATACTACAAATTTTACTCCATTGATGAATCAAATA 1188
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TCATCTGTGATAAAATCAACTCTTAATGAAACATTGAAAGAAGTTGAAAAAAAATGTGGT 1248
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 AATTCTTCATCTCTTAAAATAAATCCATCATCAGATTCATGTACAACTAATACTATTGAT 1308
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 CGTAATGATCATTATTCAGAAATAGTATATGACGATGTGAAGCATAAACAATCCAATTTA 1368
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 ACAACATCGGATAAAACAGCTGTGAATAAAAAATCACAAAATCGTCATTTAAATAAGACT 1428
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 GGTAATGTCAATACTCCTCATGTTAGTAACAGTGGTAGCAATAGTAATAATAATAATAAT 1488
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 CCTAATGTAAAGAATAAAATACAAACAACCAATGAGAATCCGCATCCATCGAACCTATAT 1548
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 CCACAACAATCACTATCAACATTAACAACAACAACAACAACATCGTCGTCCTCGTCATTA 1608
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TCAATGAAGCAAGATAAATTGACTCGTTTATTTGGACAAGCTCAAGCGTTCATTCGTTCT 1668
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 AATCGCTTAGTCGATGCTCTGGAATTGTTCTGGTGATCATACAATTGGTCAAAATATTTT 1728
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 ATTATCTTTAATTCATCAATTAAGTTGTGGTGATTTAACTGTTCAATTGGATTTAAAACT 1788
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TAAATATCTTCAAGAAGCTATTCTTTGTCTTGAATTTGATGATCCTACTACATCAGTTCA 1848
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TGGACCCAGCATATTACACTTACTTAATACACGTCTTGATACTTTATTAAAATTAACAAA 1908
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TAATAATAATAACAAAATTACTAATTCATTACGTAATCGTGTTATTAAATTAAATCGTAC 1968
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 AGTGAAATGTTTATTTAAAGAAATTTCATTATCTGATGATAAATAAAATAAAGACAATAA 2028
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TCATCAGTATACCGTTTAGTGTATGTTACGTTATGACAATAATAATAATAATAATGACAA 2088
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 CTTTCTTTCTGTTTCTTTTTTCACCGCTTTCATTGTTACTATTCTCATCTGGTTTAGATT 2148
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TTATTCTTGAGTACAGTAATAGAATAAAAAAAACTACATTTTTGAGGGTGGATGAAAAAG 2208
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 ACCGGTTTCTTCTTTTACAATTCCACGTATATATATAAAGAGTATCTGTACATGTCATTA 2268
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TTATTATTGTTTTGGATACATTGAATACCAGAACTGAAGGAATTTCTAACGATTTCGAAC 2328
consensus_10676#1 ------------------------------------------------------------
consensus_10676#2 ------------------------------------------------------------
consensus_10676#3 ------------------------------------------------------------
consensus_10676#4 ------------------------------------------------------------
consensus_10676#5 ------------------------------------------------------------
consensus_10676#0 TTTGTCAAATTCTCGTAATAATCTTCATAATAAGATTATTTGTG 2372
consensus_10676#1 --------------------------------------------
consensus_10676#2 --------------------------------------------
consensus_10676#3 --------------------------------------------
consensus_10676#4 --------------------------------------------
consensus_10676#5 --------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||