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Schistosoma mansoni
cluster # 10689 cluster # 10689       Sequences # 20       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10689#0 length = 870 sequences # 3  
consensus_10689#1 length = 618 sequences # 12  
consensus_10689#2 length = 374 sequences # 1  
consensus_10689#3 length = 328 sequences # 2  
consensus_10689#4 length = 315 sequences # 1  
consensus_10689#5 length = 299 sequences # 1  

consensusID : consensus_10689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 870
fasta sequence
                              [ANCCAATCGTTCNCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAGACTGCAGTAGTTCAAAAATAATTTAAAACGTGAGATGAAGAAATAAGTGGACGAAATAGGCAAAATACGCAGACTTAACAATATGATAGCGTTCCGGATATTTATAGTGTATAGGCATATAAAATGGACGTATTGCTACAAATAGTAGTAGAACTGATCATAGTAATATGGATAATATAAAAGGACATAAGAGCGTAAGGTGAATGGGCATATACATGGTAGTAATATTCGGATAAATAGTGATAAAGCGTTTGTTTTCGGACTTACTGAGCAACCAGTTTGCTAGAGGATTAGTAGTAATTATTCAATAATTTTGTAGTCGCAAAGTTAGGACTCTTCGTGGAGCACAAGGAAATTCGGTTTATTCCACTTCCCGATTCAGGCTTGAAAAGTGATGCGAGGAGCGAAGTACGTCCAGAAACGTCAGCTGAAAGAGAACCAAATTGAGCACGGAGATCCAGAAACGACGTCGAAAGAATGAAGAAACGACCAANACTCCAGAAGACCGTGGNAGAGCAGCGT]

[-] EMBL CD072537             [ANCCAATCGTTCNCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACGGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD086033             [                                                                                                                                                                    AAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAGTAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAGACTGCAGTAGTTCAAAAATAATTTAAAACGTGAGATGAAGAAATAAGTGGACGAAATAGGCAAAATACGCAGACTTAACAATATGATAGCGTTCCGGATATTTATAGTGTATAGGCATATAAAATGGACGTATTGCTACAAATAGTAGTAGAACTGATCATAGTAATATGGATAATATAAAAGGACATAAGAGCGTAAGGTGAATGGGCATATACATGGTAGTAATATTCGGATAAATAGTGATAAAGCGTTTGTTTTCGGACTTACTGAGCAACCAGTTTGCTAGAGGATTAGTAGTAATTATTCAATAATTTTGTAGTCGCAAAGTTAGGACTCTTCGTGGAGCACAAGGAAATTCGGTTTATTCCACTTCCCGATTCAGGCTTGAAAAGTGATGCGAGGAGCGAAGTACGTCCAGAAACGTCAGCTGAAAGAGAACCAAATTGAGCACGGAGATCCAGAAACGACGTCGAAAGAATGAAGAAACGACCAANACTCCAGAAGACCGTGGNAGAGCAGCGT]
[+] EMBL CD095915             [                                                                                                                                                                    AAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAGACTGCCGTAGTTCAAAAATAATTTAAAATGTGAGATGAAGAAATAAGTGGACGAAATAGGCAAAATACGCAGACTTAACAATATGATAGCGTTCCGGATATTTATAGTGTATAGGCATATAAAATGGACGTATTGCTACAAATAGTAGTAGAACTGATCATAGTAATATGGATAATATAAAAGGACATAAGAGCGTAAGGTGAATGGGCATATACATGGTAGTAATATTCGAATAAATAGTGATAAAGCGTTTGTTTTCGGACTTACTGAGCAACCAGTTTGCTAGAGGATTAGTAGTAATTATTCAATAATTCTGTAGCCCCA                                                                                                                                                                                                      ]


>consensus_10689#0 ANCCAATCGTTCNCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTC GACTGGAGCGAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGA ATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACA CACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATG CATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAA GATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAGACTGCAGTAGTT CAAAAATAATTTAAAACGTGAGATGAAGAAATAAGTGGACGAAATAGGCAAAATACGCAG ACTTAACAATATGATAGCGTTCCGGATATTTATAGTGTATAGGCATATAAAATGGACGTA TTGCTACAAATAGTAGTAGAACTGATCATAGTAATATGGATAATATAAAAGGACATAAGA GCGTAAGGTGAATGGGCATATACATGGTAGTAATATTCGGATAAATAGTGATAAAGCGTT TGTTTTCGGACTTACTGAGCAACCAGTTTGCTAGAGGATTAGTAGTAATTATTCAATAAT TTTGTAGTCGCAAAGTTAGGACTCTTCGTGGAGCACAAGGAAATTCGGTTTATTCCACTT CCCGATTCAGGCTTGAAAAGTGATGCGAGGAGCGAAGTACGTCCAGAAACGTCAGCTGAA AGAGAACCAAATTGAGCACGGAGATCCAGAAACGACGTCGAAAGAATGAAGAAACGACCA ANACTCCAGAAGACCGTGGNAGAGCAGCGT



consensusID : consensus_10689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 618
fasta sequence
                              [AAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACT-GGTTAAGA-AAC-ACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGA-GGTGGGTGATGGATTCAAAA-CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCA-TGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCA-GCGGCAAATAGTAC-A-ATAAAGGATGGCGAATAGACGATAGATTATATGAGATGTGGGTGATGGATGCAGAAC]

[+] EMBL CD190314             [AAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGAGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACT GGTTAAGA AAC ACAGTGGAAGTAAATGCAGCGGCATATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGA GGTGCGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGCCCAAAAGTCTAATATAGCGTTGTAGCATGCATATAGACTGGTTAAGATACACAGAGGAGGGTAATGCAGCGGCGACTAGTACAATTAAGGATGGCGAGTAGACGATAGATTATATGAGAGGTGCGTGATGGATTCACAACGAAACAGTC AGACACACACACTGTCATAATATGGTGAAAATTCGAGTACCAAAGTCTAATATAGCGCTGTA CAGTGCATAGAAACTGGTTAAGAAACACAGTGTAAGTANACGCA GCGGCAAATAGTACAA ATAAAGGATGGCGAATAGACGATAGATTATA                          ]
[-] EMBL BG931748             [                                                       AAACAGTCAANACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACT GGTTAAGA AAC ACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCA TGCATAGAAACTGGTTAAGAg                                                                                               ]
[-] EMBL CD124896             [                                                         ACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACT GGTTAAGA AAC ACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCGTAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACA  GTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATA                                                                                                                                ]
[-] EMBL CD094736             [                                                                                ATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACT GGTTAAGA AAC ACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCA TGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCA GCGGCAAATAGTAC A ATAAAAGATGGCGAATAGACGATAGATTATATGAGATGTGGGTGATGGATGCAGAAC]
[-] EMBL CD094677             [                                                                                                              CTAATATAGCGTTGTAGCATGCATAGAAACT GGTTAAGA AAC ACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATACAGCGTTGTAGCA TGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCA GCGGCAAATAGTAC A ATAAAAGATGGCGAATAGACGATAGATTATATGAGATGTGGGTGATGGATGCGGAAC]
[+] EMBL CD169362             [                                                                                                                AATATAGCGTTGTAGCATGCATAGAAACT GGTTAAGA AAC ACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCA TGCATAGAAACTGGTTA                                                                                                   ]
[+] EMBL CD089573             [                                                                                                                   ATAGCGTTGTAGCATGCATAGAAACT GGTTAAGA AAC ACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAA CGATACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCA TGCATAGA                                                                                                            ]
[+] EMBL CD060182             [                                                                                                                                 TGCATAGACACTAGGTGAAGACATCGACAGAGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAAGCGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAGACGGTCAAAACACACACACTGTCATAATATGGTGGAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCA TGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCA GCGGCAAATAGTAC A ATAAA                                                    ]
[-] EMBL CD190297             [                                                                                                                                                                                                AAGATGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCA TGCATAGAAACTGGTTAAGAA                                                                                               ]
[+] EMBL CD179985             [                                                                                                                                                                                                    TGGCGAATAGACGATAGATTATATGAGA GGTGGGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGATACAGTCAAAACACACACACTGTCATAATATGGTGAATATTCGTGTACAAAAGTCTAATATAGCGTTGTAGCA TGCATATACACTGGTTAAGACACACAGTGGGAGTAAATGCATGC GCATATAGT C ATNNNNAGGATGGCGAATAGACGATAGATa                             ]
[-] EMBL CD166067             [                                                                                                                                                                                                                GATAGATNATATGAGA GGTGGGTGATGGATTCAAAA CGAAACAGTCAANACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAG                                                                                                                                                                                                                                ]
[+] EMBL CD068244             [                                                                                                                                                                                                                  TAGATTATATGAGACGGTGGGTGATGGATTCAAAA CGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAAAGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCG                                                                                                                             ]


>consensus_10689#1 AAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACA GTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGC GTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATA GTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAA ACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCT AATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGC GGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATG GATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCC AAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTA AATGCAGCGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATATGAGATGT GGGTGATGGATGCAGAAC



consensusID : consensus_10689#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence
                              [AGCACGGTACCCTGCCATCACCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTTACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAGCACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGT]

[+] EMBL CD168520             [AGCACGGTACCCTGCCATCACCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTTACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAGCACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGT]


>consensus_10689#2 AGCACGGTACCCTGCCATCACCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGC CTTTACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCC GTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAGCA CAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTT GCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATA CGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTT CCCGTTCCGGTTGT



consensusID : consensus_10689#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 328
fasta sequence
                              [CAACCGTGGAGTAGTACAATATGAGATGGCGAAAAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAG]

[-] EMBL CD136600             [CAACCGTGGAGTAGTACAATATGAGATGGCGAAAAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAG]
[+] EMBL CD089550             [                                                                                                                                        ATAGCGTTGCAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGATACAGTCAAAAC                                                   ]


>consensus_10689#3 CAACCGTGGAGTAGTACAATATGAGATGGCGAAAAGACGATAGATTATATGAGAGGTGGG TGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAATTCG TGTCCAAAAGTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGG AAGTAAATGCAGCGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATATGA GAGGTGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTG AAAATTCGTGTCCAAAAGTCTAATATAG



consensusID : consensus_10689#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence
                              [CGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGGACGCAGAAAGTGAAGTGGTACAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGCAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGAGAGACATTGGGGCAAGTTGAAACCGACGAAGAACAGGAAAAGAGGAAGGACCAA]

[+] EMBL CD064750             [CGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGGACGCAGAAAGTGAAGTGGTACAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGCAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGAGAGACATTGGGGCAAGTTGAAACCGACGAAGAACAGGAAAAGAGGAAGGACCAA]


>consensus_10689#4 CGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGGACGCAGAAAGTGAAGTG GTACAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAG GCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAG ATGGAGGCGGAATATGGTGCAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAG TCGGCAGTCGAAGTGTTCGGAGAGACATTGGGGCAAGTTGAAACCGACGAAGAACAGGAA AAGAGGAAGGACCAA



consensusID : consensus_10689#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence
                              [GTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATCCAACCTGTCCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGA]

[+] EMBL BG931734             [GTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATCCAACCTGTCCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGA]


>consensus_10689#5 GTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCAT CTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGC CTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATCCAACCTGTCCTAC CACTTCACTTTCTGCGTCCGCTTCAACTTGCCGACACGCTCAACCAATCGTTCCCGTTCC GGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      AAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAAAACGAAACA 60
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      ------------------------------------------------------------
consensus_10689#4      ------------------------------------------------------------
                                                                                   

consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      GTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAAGTCTAATATAGC 120
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      -----------------ANCCAATCGTTCNCGTTCCGGTTGTGCTGCAGTCTCTGCAAGC 43
consensus_10689#4      ------------------------------------------------------------
                                                                                   

consensus_10689#2      ---------------AGCACGGTACCCTGCCATCACCGACTGCCGACTCGGCTTCCG--T 43
consensus_10689#5      ----------------------------------------------GTCGGCTTCCG--T 12
consensus_10689#1      GTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAAGTAAATGCAGCGGCAAA-T 179
consensus_10689#3      ------------------------------------------------CAACCGTGGAGT 12
consensus_10689#0      GCCTCAGACTCCAATTCGACTGG--AGCGAACACAGTGGAAGTAAATGCAGCGGCAAA-T 100
consensus_10689#4      ----------------------------------------------CGTGTGTCTGTGTT 14
                                                                                  *

consensus_10689#2      CTCACCTTCAAATACGCCTT-TACCAACTTCACCATATTCCGCCTCCATCTCACCGACAC 102
consensus_10689#5      CTCACCTTCAAATACGCCTT-CACCAACTTCACCATATTCCGCCTCCATCTCACCGACAC 71
consensus_10689#1      AGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAA 239
consensus_10689#3      AGTACAATATGAGATGGCGAAAAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAA 72
consensus_10689#0      AGTACAATAAAAGATGGCGAATAGACGATAGATTATATGAGAGGTGGGTGATGGATTCAA 160
consensus_10689#4      CGCTCCAGTCGAATTGGAGTCTGAGGCGGACGCAGAAAGTGAAGTGGTACAACAGGTTGA 74
                           *      *   *                    *       *               

consensus_10689#2      GCTCAACCA---ATCGTTCC-CGTTC-CGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGA 157
consensus_10689#5      GCTCAACCA---ATCGTTCC-CGTTC-CGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGA 126
consensus_10689#1      AACGAAACA---GTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAA 296
consensus_10689#3      AACGAAACA---GTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAA 129
consensus_10689#0      AACGAAACA---GTCAAAACACACACACTGTCATAATATGGTGAAAATTCGTGTCCAAAA 217
consensus_10689#4      ATCGGAACGTGTGTCTGTGTTCGCTC-CAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGA 133
                            * *     **      *   * * **     *   **            *  * *

consensus_10689#2      CTCCAATTCGAC--TGGAGCGAGCACAGACACACGTTCCGATTCAACCTGTTCTACCACT 215
consensus_10689#5      CTCCAATTCGAC--TGGAGCGAACACAGACACACGTTCCGATCCAACCTGTCCTACCACT 184
consensus_10689#1      GTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAA-GTAAAT 355
consensus_10689#3      GTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAA-GTAAAT 188
consensus_10689#0      GTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAACACAGTGGAA-GTAAAT 276
consensus_10689#4      CTGCAGCACAAC--CGGAACGGGAACG---ATTGGTTGAG------CGTGTCGGTGAGAT 182
                        *  *      *   * * *    *     *   ***  *        **         *

consensus_10689#2      TCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGAC 275
consensus_10689#5      TCACTTTCTGCGTCCGCTTCAACTTGCCGACACGCTCAACCAATCGTTCCCGTT-CCGGT 243
consensus_10689#1      GCAG---CGGCAAATAGTACAATAAAGGATGGCGAATAGACGATAGATTATA-TGAGAGG 411
consensus_10689#3      GCAG---CGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATA-TGAGAGG 244
consensus_10689#0      GCAG---CGGCAAATAGTACAATAAAAGATGGCGAATAGACGATAGATTATA-TGAGAGG 332
consensus_10689#4      GGAG--GCGGAATATGGTGCAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAG 240
                         *    * *       * **            *                          

consensus_10689#2      TCGGCTTCCGTCTCACCTTCAAATACGCCTT-CACCAACTTCACCATATTCCGCCTCCAT 334
consensus_10689#5      TGTGCTGCAGTCT---CTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGA- 299
consensus_10689#1      TGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAA 471
consensus_10689#3      TGGGTGATGGATTCAAAACGAAACAGTCAAAACACACACACTGTCATAATATGGTGAAAA 304
consensus_10689#0      TGGGTGATGGATTCAGACTGCAGTAGTTCAAAAATAATTTAAAACGTGAGATGAAGAAA- 391
consensus_10689#4      TCGGCAGTCGAAGTGTTCGGAGAGACATTGG-GGCAAGTTGAAACCGACGAAGAACAGGA 299
                       *  *     *                                                  

consensus_10689#2      CTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGT-------------------- 374
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      TTCGTGTCCAAAA---GTCTAATATAGCGTTGTAGCATGCATAGAAACTGGTTAAGAAAC 528
consensus_10689#3      TTCGTGTCCAAAA---GTCTAATATAG--------------------------------- 328
consensus_10689#0      TAAGTGGACGAAATAGGCAAAATACGCAGACTTAACAATATGATAGCGTTCCGGATATTT 451
consensus_10689#4      AAAGAGGAAGGACCAA-------------------------------------------- 315
                                                                                   

consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      ACAGTGGAAGTAAATGCAGCG-GCAAATAGTACAATAAAGGATGGC-GAATAGACGATAG 586
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      ATAGTGTATAGGCATATAAAATGGACGTATTGCTACAAATAGTAGTAGAACTGATCATAG 511
consensus_10689#4      ------------------------------------------------------------
                                                                                   

consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      ATTATATGAGATGTGGGTGATGGATGCAGAAC---------------------------- 618
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      -TAATATGGATAATATAAAAGGACATAAGAGCGTAAGGTGAATGGGCATATACATGGTAG 570
consensus_10689#4      ------------------------------------------------------------
                                                                                   

consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      ------------------------------------------------------------
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      TAATATTCGGATAAATAGTGATAAAGCGTTTGTTTTCGGACTTACTGAGCAACCAGTTTG 630
consensus_10689#4      ------------------------------------------------------------
                                                                                   

consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      ------------------------------------------------------------
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      CTAGAGGATTAGTAGTAATTATTCAATAATTTTGTAGTCGCAAAGTTAGGACTCTTCGTG 690
consensus_10689#4      ------------------------------------------------------------
                                                                                   

consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      ------------------------------------------------------------
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      GAGCACAAGGAAATTCGGTTTATTCCACTTCCCGATTCAGGCTTGAAAAGTGATGCGAGG 750
consensus_10689#4      ------------------------------------------------------------
                                                                                   

consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      ------------------------------------------------------------
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      AGCGAAGTACGTCCAGAAACGTCAGCTGAAAGAGAACCAAATTGAGCACGGAGATCCAGA 810
consensus_10689#4      ------------------------------------------------------------
                                                                                   

consensus_10689#2      ------------------------------------------------------------
consensus_10689#5      ------------------------------------------------------------
consensus_10689#1      ------------------------------------------------------------
consensus_10689#3      ------------------------------------------------------------
consensus_10689#0      AACGACGTCGAAAGAATGAAGAAACGACCAANACTCCAGAAGACCGTGGNAGAGCAGCGT 870
consensus_10689#4      ------------------------------------------------------------
                                                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)