These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 953 fasta sequence [CCTCGAGGCCAAAAATTCGGCACGAGGATAACACTTCAATTGACGGTATCTCCGCCTGAATCGAATTCTAAACCACCACTGCTTAGTATAGGACAAGTTGAAAATTTATTTCATGAATGGGGACATGCATTACATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCACGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTAATGAAATAATCGCATTACAACAATTATCTATTGGTCTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTNTATATGGAAAAATTATTATGTCATGGTGGTGAGTATNCTNCAGCTATTCTACTTTCTGACTTNCTGGATTGTGACGACGAAATTAGCAGTCAAAAATGTGTATTATCTCCTAAAATGTAGCTGAAGGTTAACAGATCAGTTGGAAGAATGGAATGGGCTCACTTCTTNANNNGACGTATGATCGCTGGNTATTCNACCAGATCTTCGATTNACACAGAGAGAGAGACTNNATATTTGATATTTNGTGTGATGAGCTTGAAATCACAC] [+] EMBL CD081267 [CCTCGAGGCCAAAAATTCGGCACGAGGATAACACTTCAATTGACGGTATCTCCGCCTGAATCGAATTCTAAACCACCACTGCTTAGTATAGGACAAGTTGAAAATTTATTTCATGAATGGGGACATGCATTACATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCACGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTAATGAAATAATCGCATTACAACAATTATCTATTGGTCTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTNTATATGGAAAAATTATTATGTCATGGTGGTGAGTATNCTNCAGCTATTCTACTTTCTGACTTNCTGGATTGTGACGACGAAATTAGCAGTCAAAAATGTGTATTATCTCCTAAAATGTAGCTGAAGGTTAACAGATCAGTTGGAAGAATGGAATGGGCTCACTTCTTNANNNGACGTATGATCGCTGGNTATTCNACCAGATCTTCGATTNACACAGAGAGAGAGACTNNATATTTGATATTTNGTGTGATGAGCTTGAAATCACAC] [+] EMBL CD147889 [ ATCTCCGCCTGAATCGAATTCTAAACCACCACTGCTTAGTATAGGACAAGTTGAAAATTTATTTCATGAATGGGGACATGCATTACATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCACGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTAATGAAATAATCGCATTACAACAATTATCTATTGGTCTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAGCTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTAT ] consensusID : consensus_10690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence [GCGGCCAGAATTCGGCACGAGGGTGGCTCTCCAAAGAAATTAACAGACAGTAAAACCAATGGCAGGGATTGAGGATTTCACTGTTTTTAAAGTAAGTTGGGCAGACTTATTCCCAATGGGGCTCCGTACAATATTCGTTAGCAGGCCATTTATGTTGCTGGAAAAAGATGCTTTCTTACACTATACATCCCAGGTCGTACGATCTGACCAAAACCGTGGAGTTCTGTTGTTGAACCGTGTTAGAACCAATCATTGCAATATAGAATCGATTTCGCATGACTAGATATTGTGAACTTGGTCATTTCGTGTAGTTTATCCCTACCCATATCCACAGCTGGAAATCTTCTTGTGAGGTGCTAGACGTTATACTGCTGATTTCACGATAGGACAAGTCAGTACAGACAATTGTTATGCCCCGATAAGGGTAATAAATGGTAACTTTGAAATCTATTTATGAACCAATACTATGCGTATATATTTTATCGTGTAGTTGCTAAATAACTGAACTACTCATATTCATGTCCCTCTTGTTATAAGCTTCATTTTGATCTATAGACTATTATTATACGATTTACCATTTTTGAGTTATCCCTAGTCTGTTACTTACCGCCTCCCACATTCACAGCCATATTTGGCTAAATCTCGTACACATGTTATTTTCTATTTTATGGTACGACGTGGTCAGTTTGTTTGGTATATAAACCCAGTACGTTTGAAATATAATGAT] [+] EMBL CD079294 [GCGGCCAGAATTCGGCACGAGGGTGGCTCTCCAAAGAAATTAACAGACAGTAAAACCAATGGCAGGGATTGAGGATTTCACTGTTTTTAAAGTAAGTTGGGCAGACTTATTCCCAATGGGGCTCCGTACAATATTCGTTAGCAGGCCATTTATGTTGCTGGAAAAAGATGCTTTCTTACACTATACATCCCAGGTCGTACGATCTGACCAAAACCGTGGAGTTCTGTTGTTGAACCGTGTTAGAACCAATCATTGCAATATAGAATCGATTTCGCATGACTAGATATTGTGAACTTGGTCATTTCGTGTAGTTTATCCCTACCCATATCCACAGCTGGAAATCTTCTTGTGAGGTGCTAGACGTTATACTGCTGATTTCACGATAGGACAAGTCAGTACAGACAATTGTTATGCCCCGATAAGGGTAATAAATGGTAACTTTGAAATCTATTTATGAACCAATACTATGCGTATATATTTTATCGTGTAGTTGCTAAATAACTGAACTACTCATATTCATGTCCCTCTTGTTATAAGCTTCATTTTGATCTATAGACTATTATTATACGATTTACCATTTTTGAGTTATCCCTAGTCTGTTACTTACCGCCTCCCACATTCACAGCCATATTTGGCTAAATCTCGTACACATGTTATTTTCTATTTTATGGTACGACGTGGTCAGTTTGTTTGGTATATAAACCCAGTACGTTTGAAATATAATGA ] [-] EMBL CD073575 [ CACTATACATCNCAGGTCGTACGATCTGACCAAAACCGTGGAGTTCTGTTGTTGAACCGTGTTAGAACCAATCATTGCAATATAGAATCGATTTCGCATGACTAGATATTGTGAACTTGGTCATTTCGTGTAGTTTATCCCTACCCATATCCACAGCTGGAAATCTTCTTGTGAGGTGCTAGACGTTATACTGCTGATTTCACGATAGGACAAGTCAGTACAGACAATTGTTATGCCCCGATAAGGGTAATAAATGGTAACTTTGAAATCTATTTATGAACCAATACTATGCGTATATATTTTATCGTGTAGTTGCTAAATAACTGAACTACTCATATTCATGTCCCTCTTGTTATAAGCTTCATTTTGATCTATAGACTATTATTATACGATTTACCATTTTTGAGTTATCCCTAGTCTGTTACTTACCGCCTCCCACATTCACAGCCATATTTGGTTAAATCTCGTACACATGTTATTTTCTATTTTATGGTACGACGTGGTCAGTTTGTTTGGTATATAAACCCAGTACGTTTGAAATATAATGAT] consensusID : consensus_10690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 678 fasta sequence [ATGCATGC-TGTTTGACATCCAAGCTGTACTGTCACTGTATGCATCGGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCACACACACTGTACCGATCTACGAAGGTTATGCTCTACCACATGCTATTCTGCGTCTGGATCTGGCTGGTCGTGATTTGACCGACTACTTGATGAAGATCCTGACGGAACGTGGTTACAGTTTCACGACAACAGCTGAGCGAGAAATCGTGCGTGACATCAAGGAGAAACTGTGTTATGTGGCTCTTGACTTTGAACAGGAAATGGCCACTGCCGCATCCAGCTCATCTCTGGAGAAGAGTTATGAACTGCCTGATGGTCAGGTGATCACGATCGGTAACGAACGATTCCGTTGTCCTGAGGCGTAATTCCAACCAAGTTTCTTGGGTATGGAATCTGCTGGTGTTCATGAGACCACATTCAACTCAATCATGAAGTGTGATGTGGACATTCGTAAAGATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAATGTTCCCACGTATTGCTGATCGTATGCAGAAAGCAGATCACAGCATTGGCGACCGAGCACAATGCTAGATTCAGCATAGTTGCTTCAACCGAAGCGTTAATATATTCCGTTTGCATTGCGGGCTTCAATTTGGCGTATCGCTCACATTCCACAG] [+] EMBL CD113729 [ATGCATGC TGTTTGACATCCAAGCTGTACTGTCACTGTATGCATCGGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCACACACACTGTACCGATCTACGAAGGTTATGCTCTACCACATGCTATTCTGCGTCTGGATCTGGCTGGTCGTGATTTGACCGACTACTTGATGAAGATCCTGACGGAACGTGGTTACAGTTTCACGACAACAGCTGAGCGAGAAATCGTGCGTGACATCAAGGAGAAACTGTGTTATGTGGCTCTTGACTTTGAACAGGAAATGGCCACTGCCGCATCCAGCTCATCTCTGGAGAAGAGTTATGAACTGCCTGATGGTCAGGTGATCACGATCGGTAACGAACGATTCCGTTGTCCTGAGGCGTAATTCCAACCAAGTTTCTTGGGTATGGAATCTGCTGGTGTCCATGAGACCACATTCAACTCAATCATGAAGTGTGATGTGGACATTCGTAAAGATCTGTACGCGAACACTG ] [+] EMBL CD113713 [ TGCATGCTTGTTTGACATCCAAGCTGTACTGTCACTGTATGCATCGGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCACACACGCTGTACCGATCTACGAAGGTTATGCTCTACCACATGCTATTCTGCGTCTGGATCTGGCTGGACGTGATTTGACCGACTACTTGATGAAGATCCTGACGGAACGTGGTTACAGTTTCACGACAACAGCTGAGCGAGAAATCGTGCGTGACATCAAGGAGAAACTGTGTTATGTGGCTCTTGACTTTGAACAGGAAATGGCCACTGCCGCATCCAGCTCATCTCTGGAGAAGAGTTATGAACTGCCTGATGGTCAGGTGATCACGATCGGTAACGAACGATTCCGTTGTCCTGAGGCGTTATTCCAACCAAGTTTCTTGGGTATGGAATCTGCTGGTGTTCATGAGACCACATTCAACTCAATCATGAAGTGTGATGTGGACCTTCGTAAAGATCTGTACGCGAACAC ] [+] EMBL AW061415 [ tcGTGTTCATGAGACCACATTCAACTCAATCATGAAGTGTGATGTGGACATTCGTAAAGATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAATGTTCCCACGTATTGCTGATCGTATGCAGAAAGCAGATCACAGCATTGGCGACCGAGCACAATGCTAGATTCAGCATAGTTGCTTCAACCGAAGCGTTAATATATTCCGTTTGCATTGCGGGCTTCAATTTGGCGTATCGCTCACATTCCACAG] consensusID : consensus_10690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 658 fasta sequence [CTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAATT] [-] EMBL CD074527 [CTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGT AATACACCAGCaa ] [-] EMBL CD074348 [ AACAGGCTACCTATGCTATTCTGGATCAAGTTNTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAAT ] [-] EMBL CD076948 [ GGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACCGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAA ] [-] EMBL CD076424 [ GTTNTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAATT] [-] EMBL CD075097 [ TCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTT TTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAAT ] consensusID : consensus_10690#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 569 fasta sequence [CACAAACATACTGGGTTTATATAGCAATCAAACTGACCACATCTTACCATAAAATAGAAAATAACATTTGTACAATATTTAGTCAAATGTGGCTGTGGAAAGGAAGAACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTACATCGTATAATAATAGTCTATAGGTCAAAATAAAGCTTATAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAACAACTATACAAAGGGAAATATACATATAACATTGGTCCATAAATAGTCCTCAGAGTTACCATACATAATTCTCCACGGGATACAACAGTTTGGATATTCATAAAAATATCCAAAAATTATTCTGTTTATTCTAATTCTATGTTGAATGTAAAATGGTATGATTTCACATGTCTTCAGACTTTTCACATGTCGTTTCCTATTGGTCAGTATTCACGGTCGTCCTAACTGTATTAATATGCATTGTCTGTAAATTATATTCATTCTCCTGACCCCTTTAACAATACTCATCTTACGGCTTGTGTTCTAATATATTGGAGATTGGGGGACTGTATTGCGGTCATATTG] [-] EMBL CD120050 [CACAAACATACTGGGTTTATATAGCAATCAAACTGACCACATCTTACCATAAAATAGAAAATAACATTTGTACAATATTTAGTCAAATGTGGCTGTGGAAAGGAAGAACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTACATCGTATAATAATAGTCTATCTGTCAAAATAAAGCTTTTAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAGCAACTATACAATGGGAAATATACATATAACATTGGTCCATAAATAGTCTTCAGAGTTACCATTCACAATTCTCTTCGGGATACA ] [+] EMBL CD198565 [ ATAATAATAGTCTATAGGTCAAAATAAAGCTTATAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAACAACTATACAAAGGGAAATATACATATAACATTGGTCCATAAATAGTCCTCAGAGTTACCATACATAATTCTCCACGGGATACAACAGTTTGGATATTCATAAAAATATCCAAAAATTATTCTGTTTATTCTAATTCTATGTTGAATGTAAAATGGTATGATTTCACATGTCTTCAGACTTTTCACATGTCGTTTCCTATTGGTCAGTATTCACGGTCGTCCTAACTGTATTAATATGCATTGTCTGTAAATTATATTCATTCTCCTGACCCCTTTAACAATACTCATCTTACGGCTTGTGTTCTAATATATTGGAGATTGGGGGACTGTATTGCGGTCATATTG] [+] EMBL CD198560 [ ATAATAATAGTCTATAGGTCAAAATAAAGCTTATAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAACAACTATACAAAGGGAAATATACATATAACATTGGTCCATAAATAGTCCTCAGAGTTACCATACATAATTCTCCACGGGATACAACAGTTTGGATATTCATAAAAATATCCAAAAATTATTCTGTTTATTCTAATTCTATGTTGAATGTAAAATGGTATGATTTCACATGTCTTCAGACTTTTCACATGTCGTTTCCTATTGGTCAGTATTCACGGTCGTCCTAACTGTATTAATATGCATTGTCTGTAAATTATATTCATTCTCCTGACCCCTTTAACAATACTCATCTTACGGCT ] consensusID : consensus_10690#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 525 fasta sequence [CTCGTGGTTATTCAATTTATGGTGATATTGATTCAGAAACAACTACATTTCAATATGGTGGCAAAATCACAAAATATGGTAAACGTAGACGAAAGTATTCCGACAGAGATACAATTGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATGACTTTAGGATTAGAGCTAAAACAAAGAAAAAATATCAAAGAGATTATGATGGAATGTCTGATATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAATCGTGGGATATCGAAAACCAAAGGAGAATCTAAAACATCAGAATCGCAAAACAGAACTGAATTAGATATTTTTAGTAATGACGAAAATGGAAGAAGGATGTGAAGTTACAAATGCAGTAAATCATCAAATGTGATGTGCTTTATTCCACATAGAATCAAATTTATTTAATTACAAAATAATGTCAAAGATATACATATATATATCAGAAAATCTTTCAAGTAATATTATTATTTCTTCCAAAAAGCAAAATGAATTT] [+] EMBL AI975004 [CTCGTGGTTATTCAATTTATGGTGATATTGATTCAGAAACAACTACATTTCAATATGGTGGCAAAATCACAAAATATGGTAAACGTAGACGAAAGTATTCCGACAGAGATACAATTGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATGACTTTAGGATTAGAGCTAAAACAAAGAAAAAATATCAAAGAGATTATGATGGAATGTCTGATATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAATCGTGGGATATCGAAAACCAAAGGAGAATCTAAAACATCAGAATCGCAAAACAGAACTGAATTAGATATTTTTAGTAATGACGAAAATGGAAGAAGGATGTGAAGTTACAAATGCAGTAAATCATCAAATGTGATGTGCTTTATTCCACATAGAATCAAATTTATTTAATTACAAAATAATGTCAAAGATATACATATATATATCAGAAAATCTTTCAAGTAATATTATTATTTCTTCCAAAAAGCAAAATGAATTT] [+] EMBL BF937049 [CTCGTGGTTATTCAATTTATGGTGATATTGATTCAGAAACAACTACATTTCAATATGGTGGCAAAATCACAAAATATGGTAAACGTAGACGAAAGTATTCCGACAGAGATACAATTGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATGACTTTAGGATTAGAGCTAAAACAAAGAAAAAATATCAAAGAGATTATGATGGAATGTCTGATATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAATCGTGGGATATCGAAAACCAAAGGAGAATCTAAAACATCAGAATCGCAAAACAGAACTGAATTAGATATTTTTAGTAATGACGAAAATGGAAGAAGGATGTGAAGTTACAAATGCAGTAAATCATCAAATGTGATGTGCTTTATTCCACATAGAATCAAATTTATTTAATTACAAAATAATGTCAAAGATATACATATATATATCAGAAAATCTTTCAAGTAATATTATTATTTCTTCCAAAAAGCAAAATGAATTT] [-] EMBL CD061992 [ TGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATGACTTTAGGATTAGAGCTAAAACAAAGAAAAAATATCAAAGAGATTATGATGGAATGTCTGATATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAATCGTGGGATATCGAAAACCAAAGGAGAATTTAAAACATCAGAATCGCAAAACAGAACTGAATTAGA ] consensusID : consensus_10690#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [CATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCATGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTATTGAAATAATCGCATTACAACATTTATCTATTGGGTCTAGGACTTGGTCAAAGTTTAGAATGTTAGTCAACAGGCTACATATGCTATTCTGGATCATGTTTCGCACTCAGGTCATATAGAAAATACTTTACTGCCTTATGCAATATTCATCTCAAGACTCATGTGAATTAGGGCCTGCTTCTACAAAATTATTAGCGGTTCTTCAAAAAAGGGTGGAACATCCTGGGT] [+] EMBL AW146476 [CATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCATGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTATTGAAATAATCGCATTACAACATTTATCTATTGGGTCTAGGACTTGGTCAAAGTTTAGAATGTTAGTCAACAGGCTACATATGCTATTCTGGATCATGTTTCGCACTCAGGTCATATAGAAAATACTTTACTGCCTTATGCAATATTCATCTCAAGACTCATGTGAATTAGGGCCTGCTTCTACAAAATTATTAGCGGTTCTTCAAAAAAGGGTGGAACATCCTGGGT] consensusID : consensus_10690#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 101 fasta sequence [NCACGTTTGGNTAAATCTGGTACACATGTTATGTCCTATTTTATGGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGA] [+] EMBL SM740 [NCACGTTTGGNTAAATCTGGTACACATGTTATGTCCTATTTTATGGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10690#1 ------------------------------------------------------------ consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 CCTCGAGGCCAAAAATTCGGCACGAGGATAACACTTCAATTGACGGTATCTCCGCCTGAA 60 consensus_10690#3 ------------------------------------------------------------ consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 ------------------------------------------------------------ consensus_10690#5 ------------------------------------------------------------ consensus_10690#4 ------------------------------------------------------------ consensus_10690#1 ------------------------------------------------------------ consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 TCGAATTCTAAACCACCACTGCTTAGTATAGGACAAGTTGAAAATTTATTTCATGAATGG 120 consensus_10690#3 ------------------------------------------------------------ consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 ------------------------------------------------------------ consensus_10690#5 ------------------------------------------------------------ consensus_10690#4 ------------------------------------------------------------ consensus_10690#1 ------------------------------------------------------------ consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 GGACATGCATTACATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGG 180 consensus_10690#3 ------------------------------------------------------------ consensus_10690#6 ------------CATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGG 48 consensus_10690#2 ------------------------------------------------------------ consensus_10690#5 ------------------------------------------------------------ consensus_10690#4 ------------------------------------------------------------ consensus_10690#1 -----------------------------------------------GCGGCCAGAATTC 13 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 TGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCA 240 consensus_10690#3 ------------------------------------------------------------ consensus_10690#6 TGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCA 108 consensus_10690#2 ------------------------------------------------------------ consensus_10690#5 ------------------------------------------------------------ consensus_10690#4 ------------------------------------------------------------ consensus_10690#1 GGCACGAGGGTGGCTCTCCAAAGAAATTAACAGACAGTAAAACCAATGGCAGGGATTGAG 73 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 CGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTAATGAA 300 consensus_10690#3 ------------------------------------------------------------ consensus_10690#6 TGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTATTGAA 168 consensus_10690#2 -------------------ATGCATGCTGTTTGACATCCAAGCTGTACTGTCACTGTATG 41 consensus_10690#5 -----------------------CTCGTGGTTATTCAATTTATGGTGATATTGATTCAGA 37 consensus_10690#4 ---------CACAAACATACTGGGTTTATATAGCAATCAAACTGACCACATCTTACCATA 51 consensus_10690#1 GATTTCACTGTTTTTAAAGTAAGTTGGGCAGACTTATTCCCAATGGGGCTCCGTACAATA 133 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 ATAATCGC-ATTACAACAATTATCTATTGG-TCTAGGACTTGGTCAAAGTT--TAGAA-G 355 consensus_10690#3 --------------------------------CTAGGACTTGGTCAAAGTT--TAGAA-G 25 consensus_10690#6 ATAATCGC-ATTACAACATTTATCTATTGGGTCTAGGACTTGGTCAAAGTT--TAGAATG 225 consensus_10690#2 CATCGGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCACAC---ACACTG 98 consensus_10690#5 AACAACTACATTTCAATA-TGGTGGCAAAATCACAAAATATGGTAAACGTAGACGAAAGT 96 consensus_10690#4 AAATAGAAAATAACATTTGTACAATATTTAGTC--AAATGTGGCTGTGGAAA--GGAAGA 107 consensus_10690#1 TTCGTTAGCAGGCCATTTATGTTG--CTGGAAAAAGATGCTTTCTTACACTATACATCCC 191 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 TTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAA 415 consensus_10690#3 TTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAA 85 consensus_10690#6 TTAGTCAACAGGCTACATATGCTATTCTGGATCATGTTTCGCACTCAGGTCATATAGAAA 285 consensus_10690#2 TACCGATCTACGAAGGTTATGCTCTACCACATGCTATTCTGCGTCTGGATCTGGCTGGTC 158 consensus_10690#5 ATTCCGACAGAGATACAATTGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATG 156 consensus_10690#4 ACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTACATCGTATA---ATAATAGTCT 164 consensus_10690#1 AGGTCGTACGATCTGACCAAAACCGTGGAGTTCTGTTGTTGAACCGTGTTAGAACCAATC 251 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 ATACTTTACTGCCTTATGCAAA--ATTAA-CTCAAGAATCAAGTGAATTATGGCCTGCAT 472 consensus_10690#3 ATACTTTACTGCCTTATGCAAA--ATTAA-CTCAAGAATCAAGTGAATTATGGCCTGCAT 142 consensus_10690#6 ATACTTTACTGCCTTATGCAAT--ATTCATCTCAAGACTCATGTGAATTAGGGCCTGCTT 343 consensus_10690#2 GTGATTTGACCGACTACTTGATGAAGATCCTGACGGAACGTGGTTACAGTTTCACGACAA 218 consensus_10690#5 A--CTTTAGGATTAGAGCTAAA--ACAAAGAAAAAATATCAAAGAGATTATGA--TGGAA 210 consensus_10690#4 ATAGGTCAAAATAAAGCTTATAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAA 224 consensus_10690#1 ATTGCAATATAGAATCGATTTCGCATGACTAGATATTGTGAACTTGGTCATTTCGTGTAG 311 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 CTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTT 532 consensus_10690#3 CTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTT 202 consensus_10690#6 CTACAAAATTATTAGCGGTTCTTCAAAAAAGGGTGGAACATCCTGGGT------------ 391 consensus_10690#2 CAGCTGAGCGAGAAATCGTGCGTGACATCAAGGAGAAACTGTGTTATGTGGCTCTTGACT 278 consensus_10690#5 TGTCTGA--TATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAA 268 consensus_10690#4 CAACTATACAAAGGGAAATATACATATAACATTGGTCCATAAATAGTCCTCAGAGTTACC 284 consensus_10690#1 TTTATCCCTACCCATATCCACAGCTGGAAATCTTCTTGTGAGGTGCTAGACGTTATACTG 371 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 CACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGAC 592 consensus_10690#3 CACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGAC 262 consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 TTGAACAGGAAATGGCCACTGCCGCATCCAGCTCATCTCTGGAGAAGAGTTATGAACTGC 338 consensus_10690#5 TCGTGGGATATCGAAAACCAAAGGAGAATCTAAAACATCAGAATCGCAAAACAGAACTGA 328 consensus_10690#4 ATACATAATTCTCCACGGGATACAACAGTTTGGATATTCATAAAAATATCCAAAAATTAT 344 consensus_10690#1 CTGATTTCACGATAGGA-CAAGTCAGTACAGACAATTGTTATGC-CCCGATAAGGGTAAT 429 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 GCTATTATGCTTATTTA-ATGGCGAAAGCTGGAGCTAATCTT---TTTGGAGGCGTTATT 648 consensus_10690#3 GCTATTATGCTTATTTA-ATGGCGAAAGCTGGAGCTAATCTTG--TTTGGAGGCGTTATT 319 consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 CTGATGGTCAGGTGATC-ACGATCGGTAACGAACGATTCCGTTG-TCCTGAGGCGTAATT 396 consensus_10690#5 ATTAGATATTTTTAGTA-ATGACGAAAATGGAAGAAGGATGTGAAGTTACAAATGCAGTA 387 consensus_10690#4 TCTGTTTATTCTAATTCTATGTTGAATGTAAAATGGTATGATTTCACATGTCTTCAGACT 404 consensus_10690#1 AAATGGTAACTTTGAAATCTATTTATGAACCAATACTATGCGTATATATTTTATCGTGTA 489 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 TTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTNTATATGGAAAAATTATTATGTC 708 consensus_10690#3 TTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTC 379 consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 CCAACCAAGTTTCTTGGGTATGGAATCTGCTGGTGTTCATGAGACCACATTCA--ACTCA 454 consensus_10690#5 AATCATCAAATGTGATGTGCTTTATTCCACATAGAATCAAATTTATTTAATTACAAAATA 447 consensus_10690#4 TTTCACATGTCGTTTCCTATTGGTCAGTATTCACGGTCGTCCTAACTGTATTAATATGCA 464 consensus_10690#1 GTTGCTAAATAACTGAACTACTCATATTCATGTCCCTCTTGTTATAAGCTTCATTTTGAT 549 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 ATGGTGGTGAGTATNCTNCAGCTATTCTACTTTCTGACTTNCTGGATTGTGACGACGAAA 768 consensus_10690#3 ATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAA 439 consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 ATCATGAAGTGTGATGTGGACATTCGTAAAGATCTGTACGCGAACACTGTGTTGTCAGGT 514 consensus_10690#5 ATGTCAAAGATATACATATATATATCAGAAAATCTTTCAAGTAATATTATTATTTCTTCC 507 consensus_10690#4 TTGTCTGTAAATTATATTCATTCTCCTGACCCCTTTAACAATACTCATCTTACGGCTTGT 524 consensus_10690#1 CTATAGACTATTATTATACGATTTACCATTTTTGAGTTATCCCTAGTCTGTTACTTACCG 609 consensus_10690#7 ------------------------------------------------------------ consensus_10690#0 TTAGCAGTCAAAAATGTGT-ATTATCTCCTAAAATGT-AGCTGAAGGTT--AACAGATCA 824 consensus_10690#3 TTAGCAGTCAAAA-TGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTT-AACAGATCA 497 consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 GGTACGACAATGTTCCCACGTATTGCTGATCGTATGCAGAAAGCAGATCACAGC--ATTG 572 consensus_10690#5 AAAAAGCAAAATGAATTT------------------------------------------ 525 consensus_10690#4 GTTCTAATATATTGGAGATTGGGGGACTGTATTGCGGTCATATTG--------------- 569 consensus_10690#1 CCTCCCACATTCACAGCCATATTTGGCTAAATCTCGTACACATGTTATTTTCTATTTTAT 669 consensus_10690#7 ----------------NCACGTTTGGNTAAATCTGGTACACATGTTATGTCCTATTTTAT 44 consensus_10690#0 GTTGGAAGAA-TGGAATGGGCTC--ACTTCTTNANNNGAC-GTAT--GATCGCTGGNT-- 876 consensus_10690#3 GTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTT 557 consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 GCGACCGAGCACAATGCTAGATTCAGCATAGTTGCTTCAACCGAAGCGTTAATATATTCC 632 consensus_10690#5 ------------------------------------------------------------ consensus_10690#4 ------------------------------------------------------------ consensus_10690#1 GGTACGACGTGGTCAGTTTGTTTGGTATATAAACCCAGTACGTTTGAAATATAATGAT-- 727 consensus_10690#7 GGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGA--- 101 consensus_10690#0 ATTCN-ACCAG-ATCTT-CGATTNACACAGAGAGAGAG----ACTNNATA--TTTGATAT 927 consensus_10690#3 ATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACAT 617 consensus_10690#6 ------------------------------------------------------------ consensus_10690#2 GTTTGCATTGCGGGCTTCAATTTGGCGTATCGCTCACATTCCACAG-------------- 678 consensus_10690#5 ------------------------------------------------------------ consensus_10690#4 ------------------------------------------------------------ consensus_10690#1 ----------------------------------------- consensus_10690#7 ----------------------------------------- consensus_10690#0 TTNGTGT----GATGAG--CTTGAAATCACAC--------- 953 consensus_10690#3 ATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAATT 658 consensus_10690#6 ----------------------------------------- consensus_10690#2 ----------------------------------------- consensus_10690#5 ----------------------------------------- consensus_10690#4 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||