|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 953 fasta sequence
[CCTCGAGGCCAAAAATTCGGCACGAGGATAACACTTCAATTGACGGTATCTCCGCCTGAATCGAATTCTAAACCACCACTGCTTAGTATAGGACAAGTTGAAAATTTATTTCATGAATGGGGACATGCATTACATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCACGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTAATGAAATAATCGCATTACAACAATTATCTATTGGTCTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTNTATATGGAAAAATTATTATGTCATGGTGGTGAGTATNCTNCAGCTATTCTACTTTCTGACTTNCTGGATTGTGACGACGAAATTAGCAGTCAAAAATGTGTATTATCTCCTAAAATGTAGCTGAAGGTTAACAGATCAGTTGGAAGAATGGAATGGGCTCACTTCTTNANNNGACGTATGATCGCTGGNTATTCNACCAGATCTTCGATTNACACAGAGAGAGAGACTNNATATTTGATATTTNGTGTGATGAGCTTGAAATCACAC]
[+] EMBL CD081267 [CCTCGAGGCCAAAAATTCGGCACGAGGATAACACTTCAATTGACGGTATCTCCGCCTGAATCGAATTCTAAACCACCACTGCTTAGTATAGGACAAGTTGAAAATTTATTTCATGAATGGGGACATGCATTACATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCACGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTAATGAAATAATCGCATTACAACAATTATCTATTGGTCTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTNTATATGGAAAAATTATTATGTCATGGTGGTGAGTATNCTNCAGCTATTCTACTTTCTGACTTNCTGGATTGTGACGACGAAATTAGCAGTCAAAAATGTGTATTATCTCCTAAAATGTAGCTGAAGGTTAACAGATCAGTTGGAAGAATGGAATGGGCTCACTTCTTNANNNGACGTATGATCGCTGGNTATTCNACCAGATCTTCGATTNACACAGAGAGAGAGACTNNATATTTGATATTTNGTGTGATGAGCTTGAAATCACAC]
[+] EMBL CD147889 [ ATCTCCGCCTGAATCGAATTCTAAACCACCACTGCTTAGTATAGGACAAGTTGAAAATTTATTTCATGAATGGGGACATGCATTACATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCACGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTAATGAAATAATCGCATTACAACAATTATCTATTGGTCTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAGCTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTAT ]
consensusID : consensus_10690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence
[GCGGCCAGAATTCGGCACGAGGGTGGCTCTCCAAAGAAATTAACAGACAGTAAAACCAATGGCAGGGATTGAGGATTTCACTGTTTTTAAAGTAAGTTGGGCAGACTTATTCCCAATGGGGCTCCGTACAATATTCGTTAGCAGGCCATTTATGTTGCTGGAAAAAGATGCTTTCTTACACTATACATCCCAGGTCGTACGATCTGACCAAAACCGTGGAGTTCTGTTGTTGAACCGTGTTAGAACCAATCATTGCAATATAGAATCGATTTCGCATGACTAGATATTGTGAACTTGGTCATTTCGTGTAGTTTATCCCTACCCATATCCACAGCTGGAAATCTTCTTGTGAGGTGCTAGACGTTATACTGCTGATTTCACGATAGGACAAGTCAGTACAGACAATTGTTATGCCCCGATAAGGGTAATAAATGGTAACTTTGAAATCTATTTATGAACCAATACTATGCGTATATATTTTATCGTGTAGTTGCTAAATAACTGAACTACTCATATTCATGTCCCTCTTGTTATAAGCTTCATTTTGATCTATAGACTATTATTATACGATTTACCATTTTTGAGTTATCCCTAGTCTGTTACTTACCGCCTCCCACATTCACAGCCATATTTGGCTAAATCTCGTACACATGTTATTTTCTATTTTATGGTACGACGTGGTCAGTTTGTTTGGTATATAAACCCAGTACGTTTGAAATATAATGAT]
[+] EMBL CD079294 [GCGGCCAGAATTCGGCACGAGGGTGGCTCTCCAAAGAAATTAACAGACAGTAAAACCAATGGCAGGGATTGAGGATTTCACTGTTTTTAAAGTAAGTTGGGCAGACTTATTCCCAATGGGGCTCCGTACAATATTCGTTAGCAGGCCATTTATGTTGCTGGAAAAAGATGCTTTCTTACACTATACATCCCAGGTCGTACGATCTGACCAAAACCGTGGAGTTCTGTTGTTGAACCGTGTTAGAACCAATCATTGCAATATAGAATCGATTTCGCATGACTAGATATTGTGAACTTGGTCATTTCGTGTAGTTTATCCCTACCCATATCCACAGCTGGAAATCTTCTTGTGAGGTGCTAGACGTTATACTGCTGATTTCACGATAGGACAAGTCAGTACAGACAATTGTTATGCCCCGATAAGGGTAATAAATGGTAACTTTGAAATCTATTTATGAACCAATACTATGCGTATATATTTTATCGTGTAGTTGCTAAATAACTGAACTACTCATATTCATGTCCCTCTTGTTATAAGCTTCATTTTGATCTATAGACTATTATTATACGATTTACCATTTTTGAGTTATCCCTAGTCTGTTACTTACCGCCTCCCACATTCACAGCCATATTTGGCTAAATCTCGTACACATGTTATTTTCTATTTTATGGTACGACGTGGTCAGTTTGTTTGGTATATAAACCCAGTACGTTTGAAATATAATGA ]
[-] EMBL CD073575 [ CACTATACATCNCAGGTCGTACGATCTGACCAAAACCGTGGAGTTCTGTTGTTGAACCGTGTTAGAACCAATCATTGCAATATAGAATCGATTTCGCATGACTAGATATTGTGAACTTGGTCATTTCGTGTAGTTTATCCCTACCCATATCCACAGCTGGAAATCTTCTTGTGAGGTGCTAGACGTTATACTGCTGATTTCACGATAGGACAAGTCAGTACAGACAATTGTTATGCCCCGATAAGGGTAATAAATGGTAACTTTGAAATCTATTTATGAACCAATACTATGCGTATATATTTTATCGTGTAGTTGCTAAATAACTGAACTACTCATATTCATGTCCCTCTTGTTATAAGCTTCATTTTGATCTATAGACTATTATTATACGATTTACCATTTTTGAGTTATCCCTAGTCTGTTACTTACCGCCTCCCACATTCACAGCCATATTTGGTTAAATCTCGTACACATGTTATTTTCTATTTTATGGTACGACGTGGTCAGTTTGTTTGGTATATAAACCCAGTACGTTTGAAATATAATGAT]
consensusID : consensus_10690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 678 fasta sequence
[ATGCATGC-TGTTTGACATCCAAGCTGTACTGTCACTGTATGCATCGGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCACACACACTGTACCGATCTACGAAGGTTATGCTCTACCACATGCTATTCTGCGTCTGGATCTGGCTGGTCGTGATTTGACCGACTACTTGATGAAGATCCTGACGGAACGTGGTTACAGTTTCACGACAACAGCTGAGCGAGAAATCGTGCGTGACATCAAGGAGAAACTGTGTTATGTGGCTCTTGACTTTGAACAGGAAATGGCCACTGCCGCATCCAGCTCATCTCTGGAGAAGAGTTATGAACTGCCTGATGGTCAGGTGATCACGATCGGTAACGAACGATTCCGTTGTCCTGAGGCGTAATTCCAACCAAGTTTCTTGGGTATGGAATCTGCTGGTGTTCATGAGACCACATTCAACTCAATCATGAAGTGTGATGTGGACATTCGTAAAGATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAATGTTCCCACGTATTGCTGATCGTATGCAGAAAGCAGATCACAGCATTGGCGACCGAGCACAATGCTAGATTCAGCATAGTTGCTTCAACCGAAGCGTTAATATATTCCGTTTGCATTGCGGGCTTCAATTTGGCGTATCGCTCACATTCCACAG]
[+] EMBL CD113729 [ATGCATGC TGTTTGACATCCAAGCTGTACTGTCACTGTATGCATCGGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCACACACACTGTACCGATCTACGAAGGTTATGCTCTACCACATGCTATTCTGCGTCTGGATCTGGCTGGTCGTGATTTGACCGACTACTTGATGAAGATCCTGACGGAACGTGGTTACAGTTTCACGACAACAGCTGAGCGAGAAATCGTGCGTGACATCAAGGAGAAACTGTGTTATGTGGCTCTTGACTTTGAACAGGAAATGGCCACTGCCGCATCCAGCTCATCTCTGGAGAAGAGTTATGAACTGCCTGATGGTCAGGTGATCACGATCGGTAACGAACGATTCCGTTGTCCTGAGGCGTAATTCCAACCAAGTTTCTTGGGTATGGAATCTGCTGGTGTCCATGAGACCACATTCAACTCAATCATGAAGTGTGATGTGGACATTCGTAAAGATCTGTACGCGAACACTG ]
[+] EMBL CD113713 [ TGCATGCTTGTTTGACATCCAAGCTGTACTGTCACTGTATGCATCGGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCACACACGCTGTACCGATCTACGAAGGTTATGCTCTACCACATGCTATTCTGCGTCTGGATCTGGCTGGACGTGATTTGACCGACTACTTGATGAAGATCCTGACGGAACGTGGTTACAGTTTCACGACAACAGCTGAGCGAGAAATCGTGCGTGACATCAAGGAGAAACTGTGTTATGTGGCTCTTGACTTTGAACAGGAAATGGCCACTGCCGCATCCAGCTCATCTCTGGAGAAGAGTTATGAACTGCCTGATGGTCAGGTGATCACGATCGGTAACGAACGATTCCGTTGTCCTGAGGCGTTATTCCAACCAAGTTTCTTGGGTATGGAATCTGCTGGTGTTCATGAGACCACATTCAACTCAATCATGAAGTGTGATGTGGACCTTCGTAAAGATCTGTACGCGAACAC ]
[+] EMBL AW061415 [ tcGTGTTCATGAGACCACATTCAACTCAATCATGAAGTGTGATGTGGACATTCGTAAAGATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAATGTTCCCACGTATTGCTGATCGTATGCAGAAAGCAGATCACAGCATTGGCGACCGAGCACAATGCTAGATTCAGCATAGTTGCTTCAACCGAAGCGTTAATATATTCCGTTTGCATTGCGGGCTTCAATTTGGCGTATCGCTCACATTCCACAG]
consensusID : consensus_10690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 658 fasta sequence
[CTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAATT]
[-] EMBL CD074527 [CTAGGACTTGGTCAAAGTTTAGAAGTTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGT AATACACCAGCaa ]
[-] EMBL CD074348 [ AACAGGCTACCTATGCTATTCTGGATCAAGTTNTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAAT ]
[-] EMBL CD076948 [ GGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAAATACTTTACCGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAA ]
[-] EMBL CD076424 [ GTTNTGCACTCAGGTCCTATTGAAAATACTTTACTGCCTTATGCAAAATTAACTCAAGAATCAAGTGAATTATGGCCTGCATCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTTGTTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAATT]
[-] EMBL CD075097 [ TCTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTTCACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGACGCTATTATGCTTATTTAATGGCGAAAGCTGGAGCTAATCTT TTTGGAGGCGTTATTTTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTCATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAATTAGCAGTCAAAATGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTTAACAGATCAGTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTTATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACATATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAAT ]
consensusID : consensus_10690#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 569 fasta sequence
[CACAAACATACTGGGTTTATATAGCAATCAAACTGACCACATCTTACCATAAAATAGAAAATAACATTTGTACAATATTTAGTCAAATGTGGCTGTGGAAAGGAAGAACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTACATCGTATAATAATAGTCTATAGGTCAAAATAAAGCTTATAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAACAACTATACAAAGGGAAATATACATATAACATTGGTCCATAAATAGTCCTCAGAGTTACCATACATAATTCTCCACGGGATACAACAGTTTGGATATTCATAAAAATATCCAAAAATTATTCTGTTTATTCTAATTCTATGTTGAATGTAAAATGGTATGATTTCACATGTCTTCAGACTTTTCACATGTCGTTTCCTATTGGTCAGTATTCACGGTCGTCCTAACTGTATTAATATGCATTGTCTGTAAATTATATTCATTCTCCTGACCCCTTTAACAATACTCATCTTACGGCTTGTGTTCTAATATATTGGAGATTGGGGGACTGTATTGCGGTCATATTG]
[-] EMBL CD120050 [CACAAACATACTGGGTTTATATAGCAATCAAACTGACCACATCTTACCATAAAATAGAAAATAACATTTGTACAATATTTAGTCAAATGTGGCTGTGGAAAGGAAGAACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTACATCGTATAATAATAGTCTATCTGTCAAAATAAAGCTTTTAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAGCAACTATACAATGGGAAATATACATATAACATTGGTCCATAAATAGTCTTCAGAGTTACCATTCACAATTCTCTTCGGGATACA ]
[+] EMBL CD198565 [ ATAATAATAGTCTATAGGTCAAAATAAAGCTTATAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAACAACTATACAAAGGGAAATATACATATAACATTGGTCCATAAATAGTCCTCAGAGTTACCATACATAATTCTCCACGGGATACAACAGTTTGGATATTCATAAAAATATCCAAAAATTATTCTGTTTATTCTAATTCTATGTTGAATGTAAAATGGTATGATTTCACATGTCTTCAGACTTTTCACATGTCGTTTCCTATTGGTCAGTATTCACGGTCGTCCTAACTGTATTAATATGCATTGTCTGTAAATTATATTCATTCTCCTGACCCCTTTAACAATACTCATCTTACGGCTTGTGTTCTAATATATTGGAGATTGGGGGACTGTATTGCGGTCATATTG]
[+] EMBL CD198560 [ ATAATAATAGTCTATAGGTCAAAATAAAGCTTATAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAACAACTATACAAAGGGAAATATACATATAACATTGGTCCATAAATAGTCCTCAGAGTTACCATACATAATTCTCCACGGGATACAACAGTTTGGATATTCATAAAAATATCCAAAAATTATTCTGTTTATTCTAATTCTATGTTGAATGTAAAATGGTATGATTTCACATGTCTTCAGACTTTTCACATGTCGTTTCCTATTGGTCAGTATTCACGGTCGTCCTAACTGTATTAATATGCATTGTCTGTAAATTATATTCATTCTCCTGACCCCTTTAACAATACTCATCTTACGGCT ]
consensusID : consensus_10690#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 525 fasta sequence
[CTCGTGGTTATTCAATTTATGGTGATATTGATTCAGAAACAACTACATTTCAATATGGTGGCAAAATCACAAAATATGGTAAACGTAGACGAAAGTATTCCGACAGAGATACAATTGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATGACTTTAGGATTAGAGCTAAAACAAAGAAAAAATATCAAAGAGATTATGATGGAATGTCTGATATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAATCGTGGGATATCGAAAACCAAAGGAGAATCTAAAACATCAGAATCGCAAAACAGAACTGAATTAGATATTTTTAGTAATGACGAAAATGGAAGAAGGATGTGAAGTTACAAATGCAGTAAATCATCAAATGTGATGTGCTTTATTCCACATAGAATCAAATTTATTTAATTACAAAATAATGTCAAAGATATACATATATATATCAGAAAATCTTTCAAGTAATATTATTATTTCTTCCAAAAAGCAAAATGAATTT]
[+] EMBL AI975004 [CTCGTGGTTATTCAATTTATGGTGATATTGATTCAGAAACAACTACATTTCAATATGGTGGCAAAATCACAAAATATGGTAAACGTAGACGAAAGTATTCCGACAGAGATACAATTGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATGACTTTAGGATTAGAGCTAAAACAAAGAAAAAATATCAAAGAGATTATGATGGAATGTCTGATATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAATCGTGGGATATCGAAAACCAAAGGAGAATCTAAAACATCAGAATCGCAAAACAGAACTGAATTAGATATTTTTAGTAATGACGAAAATGGAAGAAGGATGTGAAGTTACAAATGCAGTAAATCATCAAATGTGATGTGCTTTATTCCACATAGAATCAAATTTATTTAATTACAAAATAATGTCAAAGATATACATATATATATCAGAAAATCTTTCAAGTAATATTATTATTTCTTCCAAAAAGCAAAATGAATTT]
[+] EMBL BF937049 [CTCGTGGTTATTCAATTTATGGTGATATTGATTCAGAAACAACTACATTTCAATATGGTGGCAAAATCACAAAATATGGTAAACGTAGACGAAAGTATTCCGACAGAGATACAATTGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATGACTTTAGGATTAGAGCTAAAACAAAGAAAAAATATCAAAGAGATTATGATGGAATGTCTGATATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAATCGTGGGATATCGAAAACCAAAGGAGAATCTAAAACATCAGAATCGCAAAACAGAACTGAATTAGATATTTTTAGTAATGACGAAAATGGAAGAAGGATGTGAAGTTACAAATGCAGTAAATCATCAAATGTGATGTGCTTTATTCCACATAGAATCAAATTTATTTAATTACAAAATAATGTCAAAGATATACATATATATATCAGAAAATCTTTCAAGTAATATTATTATTTCTTCCAAAAAGCAAAATGAATTT]
[-] EMBL CD061992 [ TGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATGACTTTAGGATTAGAGCTAAAACAAAGAAAAAATATCAAAGAGATTATGATGGAATGTCTGATATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAATCGTGGGATATCGAAAACCAAAGGAGAATTTAAAACATCAGAATCGCAAAACAGAACTGAATTAGA ]
consensusID : consensus_10690#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[CATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCATGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTATTGAAATAATCGCATTACAACATTTATCTATTGGGTCTAGGACTTGGTCAAAGTTTAGAATGTTAGTCAACAGGCTACATATGCTATTCTGGATCATGTTTCGCACTCAGGTCATATAGAAAATACTTTACTGCCTTATGCAATATTCATCTCAAGACTCATGTGAATTAGGGCCTGCTTCTACAAAATTATTAGCGGTTCTTCAAAAAAGGGTGGAACATCCTGGGT]
[+] EMBL AW146476 [CATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGGTGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCATGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTATTGAAATAATCGCATTACAACATTTATCTATTGGGTCTAGGACTTGGTCAAAGTTTAGAATGTTAGTCAACAGGCTACATATGCTATTCTGGATCATGTTTCGCACTCAGGTCATATAGAAAATACTTTACTGCCTTATGCAATATTCATCTCAAGACTCATGTGAATTAGGGCCTGCTTCTACAAAATTATTAGCGGTTCTTCAAAAAAGGGTGGAACATCCTGGGT]
consensusID : consensus_10690#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 101 fasta sequence
[NCACGTTTGGNTAAATCTGGTACACATGTTATGTCCTATTTTATGGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGA]
[+] EMBL SM740 [NCACGTTTGGNTAAATCTGGTACACATGTTATGTCCTATTTTATGGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10690#1 ------------------------------------------------------------
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 CCTCGAGGCCAAAAATTCGGCACGAGGATAACACTTCAATTGACGGTATCTCCGCCTGAA 60
consensus_10690#3 ------------------------------------------------------------
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 ------------------------------------------------------------
consensus_10690#5 ------------------------------------------------------------
consensus_10690#4 ------------------------------------------------------------
consensus_10690#1 ------------------------------------------------------------
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 TCGAATTCTAAACCACCACTGCTTAGTATAGGACAAGTTGAAAATTTATTTCATGAATGG 120
consensus_10690#3 ------------------------------------------------------------
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 ------------------------------------------------------------
consensus_10690#5 ------------------------------------------------------------
consensus_10690#4 ------------------------------------------------------------
consensus_10690#1 ------------------------------------------------------------
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 GGACATGCATTACATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGG 180
consensus_10690#3 ------------------------------------------------------------
consensus_10690#6 ------------CATTCTATGCTTGCACGTACACGATATCAACATGTTACTGGGACACGG 48
consensus_10690#2 ------------------------------------------------------------
consensus_10690#5 ------------------------------------------------------------
consensus_10690#4 ------------------------------------------------------------
consensus_10690#1 -----------------------------------------------GCGGCCAGAATTC 13
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 TGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCA 240
consensus_10690#3 ------------------------------------------------------------
consensus_10690#6 TGTAGTACTGATTTAGCTGAATTACCATCAACTTTATTTGAACACTTTGCGTTAGATCCA 108
consensus_10690#2 ------------------------------------------------------------
consensus_10690#5 ------------------------------------------------------------
consensus_10690#4 ------------------------------------------------------------
consensus_10690#1 GGCACGAGGGTGGCTCTCCAAAGAAATTAACAGACAGTAAAACCAATGGCAGGGATTGAG 73
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 CGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTAATGAA 300
consensus_10690#3 ------------------------------------------------------------
consensus_10690#6 TGTGTAGTGTCAGAATATGCTCGACATTGGAAAACAGGTCAGAAACCAGATCCTATTGAA 168
consensus_10690#2 -------------------ATGCATGCTGTTTGACATCCAAGCTGTACTGTCACTGTATG 41
consensus_10690#5 -----------------------CTCGTGGTTATTCAATTTATGGTGATATTGATTCAGA 37
consensus_10690#4 ---------CACAAACATACTGGGTTTATATAGCAATCAAACTGACCACATCTTACCATA 51
consensus_10690#1 GATTTCACTGTTTTTAAAGTAAGTTGGGCAGACTTATTCCCAATGGGGCTCCGTACAATA 133
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 ATAATCGC-ATTACAACAATTATCTATTGG-TCTAGGACTTGGTCAAAGTT--TAGAA-G 355
consensus_10690#3 --------------------------------CTAGGACTTGGTCAAAGTT--TAGAA-G 25
consensus_10690#6 ATAATCGC-ATTACAACATTTATCTATTGGGTCTAGGACTTGGTCAAAGTT--TAGAATG 225
consensus_10690#2 CATCGGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCACAC---ACACTG 98
consensus_10690#5 AACAACTACATTTCAATA-TGGTGGCAAAATCACAAAATATGGTAAACGTAGACGAAAGT 96
consensus_10690#4 AAATAGAAAATAACATTTGTACAATATTTAGTC--AAATGTGGCTGTGGAAA--GGAAGA 107
consensus_10690#1 TTCGTTAGCAGGCCATTTATGTTG--CTGGAAAAAGATGCTTTCTTACACTATACATCCC 191
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 TTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAA 415
consensus_10690#3 TTAGTCAACAGGCTACCTATGCTATTCTGGATCAAGTTTTGCACTCAGGTCCTATTGAAA 85
consensus_10690#6 TTAGTCAACAGGCTACATATGCTATTCTGGATCATGTTTCGCACTCAGGTCATATAGAAA 285
consensus_10690#2 TACCGATCTACGAAGGTTATGCTCTACCACATGCTATTCTGCGTCTGGATCTGGCTGGTC 158
consensus_10690#5 ATTCCGACAGAGATACAATTGGAAGTTCGGATAGATATGCTAGTTCATATATTAAAGATG 156
consensus_10690#4 ACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTACATCGTATA---ATAATAGTCT 164
consensus_10690#1 AGGTCGTACGATCTGACCAAAACCGTGGAGTTCTGTTGTTGAACCGTGTTAGAACCAATC 251
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 ATACTTTACTGCCTTATGCAAA--ATTAA-CTCAAGAATCAAGTGAATTATGGCCTGCAT 472
consensus_10690#3 ATACTTTACTGCCTTATGCAAA--ATTAA-CTCAAGAATCAAGTGAATTATGGCCTGCAT 142
consensus_10690#6 ATACTTTACTGCCTTATGCAAT--ATTCATCTCAAGACTCATGTGAATTAGGGCCTGCTT 343
consensus_10690#2 GTGATTTGACCGACTACTTGATGAAGATCCTGACGGAACGTGGTTACAGTTTCACGACAA 218
consensus_10690#5 A--CTTTAGGATTAGAGCTAAA--ACAAAGAAAAAATATCAAAGAGATTATGA--TGGAA 210
consensus_10690#4 ATAGGTCAAAATAAAGCTTATAATAAGAGGAACATGAATATGAATAGTTACGTTACTTAA 224
consensus_10690#1 ATTGCAATATAGAATCGATTTCGCATGACTAGATATTGTGAACTTGGTCATTTCGTGTAG 311
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 CTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTT 532
consensus_10690#3 CTTCTAAATTATTATCAGATATTCAATATAAAGTTGGACTATCTGATTGGTTTAGTTGTT 202
consensus_10690#6 CTACAAAATTATTAGCGGTTCTTCAAAAAAGGGTGGAACATCCTGGGT------------ 391
consensus_10690#2 CAGCTGAGCGAGAAATCGTGCGTGACATCAAGGAGAAACTGTGTTATGTGGCTCTTGACT 278
consensus_10690#5 TGTCTGA--TATGACTGGGAGGGGAAGGCAAATCACTAGTATTTGGGGCACTCATGGAAA 268
consensus_10690#4 CAACTATACAAAGGGAAATATACATATAACATTGGTCCATAAATAGTCCTCAGAGTTACC 284
consensus_10690#1 TTTATCCCTACCCATATCCACAGCTGGAAATCTTCTTGTGAGGTGCTAGACGTTATACTG 371
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 CACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGAC 592
consensus_10690#3 CACCAGCTCATCTAGGCGCATGGCCTCATCGTTTTACTCATTTAGTCAATTACGGTGGAC 262
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 TTGAACAGGAAATGGCCACTGCCGCATCCAGCTCATCTCTGGAGAAGAGTTATGAACTGC 338
consensus_10690#5 TCGTGGGATATCGAAAACCAAAGGAGAATCTAAAACATCAGAATCGCAAAACAGAACTGA 328
consensus_10690#4 ATACATAATTCTCCACGGGATACAACAGTTTGGATATTCATAAAAATATCCAAAAATTAT 344
consensus_10690#1 CTGATTTCACGATAGGA-CAAGTCAGTACAGACAATTGTTATGC-CCCGATAAGGGTAAT 429
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 GCTATTATGCTTATTTA-ATGGCGAAAGCTGGAGCTAATCTT---TTTGGAGGCGTTATT 648
consensus_10690#3 GCTATTATGCTTATTTA-ATGGCGAAAGCTGGAGCTAATCTTG--TTTGGAGGCGTTATT 319
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 CTGATGGTCAGGTGATC-ACGATCGGTAACGAACGATTCCGTTG-TCCTGAGGCGTAATT 396
consensus_10690#5 ATTAGATATTTTTAGTA-ATGACGAAAATGGAAGAAGGATGTGAAGTTACAAATGCAGTA 387
consensus_10690#4 TCTGTTTATTCTAATTCTATGTTGAATGTAAAATGGTATGATTTCACATGTCTTCAGACT 404
consensus_10690#1 AAATGGTAACTTTGAAATCTATTTATGAACCAATACTATGCGTATATATTTTATCGTGTA 489
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 TTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTNTATATGGAAAAATTATTATGTC 708
consensus_10690#3 TTTCCAAAGATCCTTGGTGTTCCTCAAGTGGACAGCTTTATATGGAAAAATTATTATGTC 379
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 CCAACCAAGTTTCTTGGGTATGGAATCTGCTGGTGTTCATGAGACCACATTCA--ACTCA 454
consensus_10690#5 AATCATCAAATGTGATGTGCTTTATTCCACATAGAATCAAATTTATTTAATTACAAAATA 447
consensus_10690#4 TTTCACATGTCGTTTCCTATTGGTCAGTATTCACGGTCGTCCTAACTGTATTAATATGCA 464
consensus_10690#1 GTTGCTAAATAACTGAACTACTCATATTCATGTCCCTCTTGTTATAAGCTTCATTTTGAT 549
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 ATGGTGGTGAGTATNCTNCAGCTATTCTACTTTCTGACTTNCTGGATTGTGACGACGAAA 768
consensus_10690#3 ATGGTGGTGAGTATCCTCCAGCTATTCTACTTTCTGACCTTCTGGATTGTGACGACGAAA 439
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 ATCATGAAGTGTGATGTGGACATTCGTAAAGATCTGTACGCGAACACTGTGTTGTCAGGT 514
consensus_10690#5 ATGTCAAAGATATACATATATATATCAGAAAATCTTTCAAGTAATATTATTATTTCTTCC 507
consensus_10690#4 TTGTCTGTAAATTATATTCATTCTCCTGACCCCTTTAACAATACTCATCTTACGGCTTGT 524
consensus_10690#1 CTATAGACTATTATTATACGATTTACCATTTTTGAGTTATCCCTAGTCTGTTACTTACCG 609
consensus_10690#7 ------------------------------------------------------------
consensus_10690#0 TTAGCAGTCAAAAATGTGT-ATTATCTCCTAAAATGT-AGCTGAAGGTT--AACAGATCA 824
consensus_10690#3 TTAGCAGTCAAAA-TGTGTTATTATCTCCTAAAATGTTAGCTGAAGGTTT-AACAGATCA 497
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 GGTACGACAATGTTCCCACGTATTGCTGATCGTATGCAGAAAGCAGATCACAGC--ATTG 572
consensus_10690#5 AAAAAGCAAAATGAATTT------------------------------------------ 525
consensus_10690#4 GTTCTAATATATTGGAGATTGGGGGACTGTATTGCGGTCATATTG--------------- 569
consensus_10690#1 CCTCCCACATTCACAGCCATATTTGGCTAAATCTCGTACACATGTTATTTTCTATTTTAT 669
consensus_10690#7 ----------------NCACGTTTGGNTAAATCTGGTACACATGTTATGTCCTATTTTAT 44
consensus_10690#0 GTTGGAAGAA-TGGAATGGGCTC--ACTTCTTNANNNGAC-GTAT--GATCGCTGGNT-- 876
consensus_10690#3 GTTGGAAGAAATGGAAATGGCTTCAACTTCTTTATTGAACCGTATTGAATCGCCTGGTTT 557
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 GCGACCGAGCACAATGCTAGATTCAGCATAGTTGCTTCAACCGAAGCGTTAATATATTCC 632
consensus_10690#5 ------------------------------------------------------------
consensus_10690#4 ------------------------------------------------------------
consensus_10690#1 GGTACGACGTGGTCAGTTTGTTTGGTATATAAACCCAGTACGTTTGAAATATAATGAT-- 727
consensus_10690#7 GGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGA--- 101
consensus_10690#0 ATTCN-ACCAG-ATCTT-CGATTNACACAGAGAGAGAG----ACTNNATA--TTTGATAT 927
consensus_10690#3 ATTCAGACCAGGATCTTACGATTAACAACAAGAGAGAAGAGAACTTATTAATTTTGACAT 617
consensus_10690#6 ------------------------------------------------------------
consensus_10690#2 GTTTGCATTGCGGGCTTCAATTTGGCGTATCGCTCACATTCCACAG-------------- 678
consensus_10690#5 ------------------------------------------------------------
consensus_10690#4 ------------------------------------------------------------
consensus_10690#1 -----------------------------------------
consensus_10690#7 -----------------------------------------
consensus_10690#0 TTNGTGT----GATGAG--CTTGAAATCACAC--------- 953
consensus_10690#3 ATTTTGTTGTTGATGATGCTTTGTAAATACACCAGCTAATT 658
consensus_10690#6 -----------------------------------------
consensus_10690#2 -----------------------------------------
consensus_10690#5 -----------------------------------------
consensus_10690#4 -----------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||