These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1290 fasta sequence [AATCCTCACAATCCCATCCTAATCAGAGTTACGAATAGCAAAGCTCTCGAGATAATGGAAAGTAAGCGTAAATCCATCGGAAATTTATGTTCAAGTCTATGCCGTAAAATATATATATTTCATTTATCCAGATAGCAGTACTGGCGACTCCTGAAATCTAGTACTTCTAAAAGTAAATGGTTATGACTGATCGAGTTAATGGTCTAGTTCTGTGTTTATATTCACCAATCCATTTCATATCTGATGTGCATCCCGTCCCGAATACCTGCCTATATTTTTGTACAGTAGGTTTATTGT-CTTTTCT--A-GCGGATTCAGTCCAAAGATGACCCACTGAAAAACTCCTCTCCAATCAAATTGCTGCCTAACAATGTCTGTTGGGATCGTTTATGGTGACCAGTATAGACAGCTGTGTTGCAGCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAGTGCTTTAATCTGTCGTCATTGTGAGGTCGTTATCAACTGGGGCGGTGGGTGGCATCATGCCAAGAGAAGTGAGGCTTCTGGATTTTGCTATTTAAATGATATCGTTTTGGCCATCCATCGACTGGTCTCATCAACCCCACCAGAAACTTCACCCAACAGACAAACACGAGTATTGTATGTTGACCTTGATCTCCATCATGGTGATGGAGTAGAAGAAGCTTTCTGGTATAGTCCTCGTGTAGTTACGTTCTCTGTACATCATGCCTCTCCTGGTTTCTTTCCC-NGTACAGGCACCTGGAATAT-GGTCGACAATGATAAATTACCGATTTTCCTAAATGGCGCTGGTCGTGGCAGGTTCTCGGCATTCAATTTGCCACTAGAAGAAGGCATCAATGATTTGGACTGGTCAAATGCTATTGGCCCTATACTTGATTCTCTTAACATAGTTATTCAACCAAGTTATGTTGTAGTTCAATGCGGAGCCGATTGTTTAGCTACTGATCCACATCGAATATTTCGTTTAACTAATTTTTACCCTAATTTAAATTTAAATTC] [+] EMBL CD167110 [AATCCTCACAATCCCATCCTAATCAGAGTTACGAATAGCAAAGCTCTCGAGATAATGGAAAGTAAGCGTAAATCCATCGGAAATTTATGTTCAAGTCTATGCCGTAAAATATATATATTTCATTTATCCAGATAGCAGTACTGGCGACTCCTGAAATCTAGTACTTCTAAAAGTAAATGGTTATGACTGATCGAGTTTATGGTCTAGTTCTGTGTTTATATTCACCAATCCATTTCATATCTGATGTGCATCC ] [+] EMBL CD167124 [AATCCTCACAATCCCATCCTAATCAGAGTTACGAATAGCAAAGCTCTCGAGATAATGGAAAGTAAGCGTAAATCCATCGGAAATTTATGTTCAAGTCTATGCCGTAAAATATATATATTTCATTTATCCAGATAGCAGTACTGGCGACTCCTGAAATCTAGTACTTCTAAAAGTAAATGGTTATGACTGATCGAGTTAATGGCCTAGTTCTGGGTTAATATTCACCAATCCATTTCATATCTGATGTGCATCCCGTCCCGAATAC ] [-] EMBL CD182321 [ GTACTGGCGACTCCTGAAATCTAGTACTTCTANAAGTAAATGGTTATGACTGATCGAGTTAATGGTCTAGTTCTGTGTTTATATTCACCAATCCATTTCATATCTGATGTGCATCCCGTCCCGAATACCTGCCTATATTTTTGTACAGTAGGTTTATTGT CTTTTCT A GCGGATTCAGTCCAAAGATGACCCACTGAAAAACTCCTCTCCAATCAAATTGCTGCCTAACAATGTCTGTTGGGATCGTTTATGGTGACCAGTATAGACAGCTGTGTTGCAGCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAA ] [+] EMBL AI975433 [ tttactcTTGTGATTTGCTGCATGCGGATTCAGTCCAAAGATGACCCACTGAAAAACCCCTCTCCAATCAAATTGCTGCCTAACAATGTCTGTTGGGATCGTTCATGGTGACCAGTATAGACAGCTGTGTTGCAGCTCACCTAAGTTTGGCGACAGATACACCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGCTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAGTGTTTTCGATTATACGTTAGCTGCTGCCCAAGGTAGTTTAGCTGCAGCTAGTGCTATAATCTGTC ] [+] EMBL CD149150 [ TGCAGCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTG ] [+] EMBL CD149240 [ TGCAGCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAATGTTTTCGATTATTCGTTAGCTGCTGTTC ] [+] EMBL CD149206 [ TGCAGCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAA ] [+] EMBL CD096229 [ GCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGGGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAGTGCTTTAATCTGTCGTCATTGTGAGGTCGTTATCAACTGGGGCGGTGGGTGGCATCATGCCAAGAGAAGTGAGGCTTCTGGATTTTGCTATTTAAATGATATCGTTTTGGCCATCCATCGACTGGTCTCATCAACCCCACCAGAAACTTCACCCAACAGACAAACACGAGTATTGTATGTTGACCTTGATCTCCATCATGGTGATGGAGTAGAAGAAGCTTTCTGGTATAGTCCTCGTGTAGTTACGTTCTCTGTGCATCATGCCTCTNCTGGTTNCTTTCCCNNGTACA GCACCTGNAATATGGGTCGAC ATGATAAATTACCGATTnt ] [+] EMBL CD096175 [ GCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAGTGCTTTAATCTGTCGTCATTGTGAGGTCGTTATCAACTGGGGCGGTGGGTGGCATCATGCCAAGAGAAGTGAGGCGTCTGGA TTTGCTATTTAAATGATATCGTTTTGGCCATCCATCGACTGGTCTCATCAACCCCACCAGAAACTTCACCCAACAGACANACACGAGTATTGTATGTTGACCTTGATCTCCATCATGGTGATGGAGTANAAGAAGCTTTCTGGTATAGTCCTCGTGTAGTTACGTTCTCTGTACATCATGCCTCTCCTGGTTTCTTTCCC GTACAGGCACCTGGAATAT GGTCGACAATGATAAATTACCGATTTT ] [+] EMBL AI977133 [ TTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAATGCTTTAATCTGTCGTCATTGTGAGGTCGTTATCAACTGGGGCGGTGGGTGGCATCATGCCAAGAGAAGTGAGGCTTCTGGATTTTGCTATTTAAATGATGTCGTTTTGGCCATCCATCGACTGGTCTCATCAACCCCACCAGAAATTTCACCCAACAGACAAACACGAGTATTGTATGTTGACCTTGATCTCCATCATGGTGATGGAGTAGAAGAAGCTCTCTGGTATAGTCCTCGGGTAGg ] [+] EMBL AI975691 [ TGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAGTGCTTTAATCTGTCGTCATTGTGAGGTCGTTATCAACTGGGGCGGTGGGTGGCATCATGCCAAGAGAAGTGAGGCTTCTGGATTTTGCTATTTAAATGATATCGTTTTGGCCATCCATCGACTGGTCTCATCAACCCCACCAGAAACTTCACCCAACAGACAAACACGAGTATTGTATGTTGACCTTGATCTCCATCATGGTGATGGAGTAGAAGAAGCTNTCTGGTATAGTCCTCGTGTAGTTACGTTCTCTGTACATC ] [-] EMBL CD114007 [ TTGATGCTCTTAAACCATTACAGAGGCTTCACTGTGAGGAGAAAGAATTGACTGCTGAGGACGAGTTACTTATGGATTCATTTAGTGTGGATTAAGACTGCCCTGGTTTTCATAGTGTCTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAGTGCTTTAATCTGTCGTCATTGTGAGGTCGTTATCAACTGGGGCGGTGGGTGGCATCATGCCAAGAGAAGTGAGGCTTCTGGATTCAGCTATTTAAATGATATCGTCTTGGCCATCCATCGACTGGTCTCATCAACCCCCCCAGCAGTTTCACCCAACAGTCAAACACGAGTATCGTATGTTGTCCTTGATATCCATCATGGTGATGGAGTAGA ] [+] EMBL CD145081 [ TTCTGGATTTTGCTATTTAAATGATATCGTTTTGGCCATCCATCGACTGGTCTCATCAACCCCACCAGAAACTTCACCCAACAGACAAACACGAGTATTGTATGTTGACCTTGATCTCCATCATGGTGATGGAGTAGAAGAAGCTTTCTGGTATAGTCCTCGTGTAGTTACGTTCTCTGTACATCATGCCTCTCCTGGTTTCTTTCCC GGTACAGGCACCTGGAATAT GGTCGACAATGATAAATTACCGATTTTCCTAAATGGCGCTGGTCGTGGCAGGTTCTCGGCATTCAATTTGCCACTAGAAGAAGGCATCAATGATTTGGACTGGTCAAATGCTATTGGCCCTATACTTGATTCTCTTAACATAGTTATTCAACCAAGTTATGTTGTAGTTCAATGCGGAGCCGATTGTTTAGCTACTGATCCACATCGAATATTTCGTTTAACTAATTTTTACCCTAATTTAAATTTAAATTC] consensusID : consensus_10695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence [TACAGCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAATGCTTTAATCTGTCGTCATTGTGAGGTAAAACTCTTTACACTTCATCTTCAGGGTAAAAGTATCGATTGAGTATTATAATACTTAGTTNTTTGTCATTCCTGTTTCCTATTAAACACAACGTTGTGTTTCTATTATTGTTGTTTGTGTTCCACCTCTGATTTAGCCATAACTTAAGTAAAATAAGTTGAGTTTTTTTTTAATTTTAAAGTGAATTCTAAATCCCAGAAGAAATTCTCGTCAAAAAACAACAGTCATTGTTATAAAATACTTTTTAAGAAAAATTGTTTGCTATTTTTGGGTAATAAGGTGTTTTATTCCTTTCCCTTCGTGTAAGATCGACTTTATCACA] [+] EMBL CD149457 [TACAGCTCACCTAAGTTTGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAGCAGTGACTGCCTTTCACTCTACAGAATATGTTGATGCTCTTAAAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAATGCTTTAATCTGTCGTCATTGTGAGGTAAAACTCTTTACACTTCATCTTCAGGGTAAAAGTATCGATTGAGTATTATAATACTTAGTTNTTTGTCATTCC ] [-] EMBL CD149624 [ AAAAATTACAAATGCTTCACTGTGAGGAGAAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAGTCTGAATTATGACTGCCCTGGTTTTCNTAGTGTTTTCGATTATTCGTTAGCTGCTGTTCAAGGTAGTTTAGCTGCAGCTAATGCTTTAATCTGTCGTCATTGTGAGGTAAAACTCTTTACACTTCATCTTCAGGGTAAAAGTATCGATTGAGTATTATAATACTTAGTTTTTTGTCATTCCTGTTTCCTATTAAACACAACGTTGTGTTTCTATTATTGTTGTTTGTGTTCCACCTCTGATTTAGCCATAACTTAAGTAAAATAAGTTGAGTTTTTTTTTAATTTTAAAGTGAATTCTAAATCCCAGAAGAAATTCTCGTCAAAAAACAACAGTCATTGTTATAAAATACTTTTTAAGAAAAATTGTTTGCTATTTTTGGGTAATAAGGTGTTTTATTCCTTTCCCTTCGTGTAAGATCGACTTTATCACA] consensusID : consensus_10695#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [ACTCGGCTCGAGGACGATCCACATCGAATATTTCGTTTAACTAATTTTTACCCTAATTTAAATTTACATTCTGAGTCGCAATCTGAATCTAAATTTAAATTAGGGTAAAAATTAGATTCAGATTGCGACTCAGAATGTAGTTTAAGTGGCTATTTGTACGCTATTAAGAAAATTTTATCATGGAAAGTTCCAACTTTAATACTTGGAGGTGGTGGCTACAATTTTCCGGATACAGCCAGACTATGGACAAGAGTTACAGCTCTGACAATTGAAGAAGTTAAGGGTAAAAAGATGACACTTTCCCCTGAAATTCCAGAACACTCCTACTTCTCTCGTTATGGTCCAGATTTCGAACTAGACATTGATTATTTTCCACACAAAAGTCATAATAAAACACTTGACAGTATACAAAAACATCATCGTCGTATACTTGAACAGTTACGTAATTATGCTGATCTAAATAAAACACTTGACAGTATACAAAAACATCATCGTCGTATACTTGAACAGTTACGTAATTATGCTGATCTAAATAAACTGATTTATGACTATGATCAAGTGTATCAATTATATAATTTAACTGGTATGTAAAATGTAGCTATAAATTTATCCTCTGTTTACCATGGATTTATTGCTCCAAACGTTNTTACTGATGCGATTCTACAGTTT] [+] EMBL CD082231 [ACTCGGCTCGAGGACGATCCACATCGAATATTTCGTTTAACTAATTTTTACCCTAATTTAAATTTACATTCTGAGTCGCAATCTGAATCTAAATTTAAATTAGGGTAAAAATTAGATTCAGATTGCGACTCAGAATGTAGTTTAAGTGGCTATTTGTACGCTATTAAGAAAATTTTATCATGGAAAGTTCCAACTTTAATACTTGGAGGTGGTGGCTACAATTTTCCGGATACAGCCAGACTATGGACAAGAGTTACAGCTCTGACAATTGAAGAAGTTAAGGGTAAAAAGATGACACTTTCCCCTGAAATTCCAGAACACTCCTACTTCTCTCGTTATGGTCCAGATTTCGAACTAGACATTGATTATTTTCCACACAAAAGTCATAATAAAACACTTGACAGTATACAAAAACATCATCGTCGTATACTTGAACAGTTACGTAATTATGCTGATCTAAATAAAACACTTGACAGTATACAAAAACATCATCGTCGTATACTTGAACAGTTACGTAATTATGCTGATCTAAATAAACTGATTTATGACTATGATCAAGTGTATCAATTATATAATTTAACTGGTATGTAAAATGTAGCTATAAATTTATCCTCTGTTTACCATGGATTTATTGCTCCAAACGTTNTTACTGATGCGATTCTACAGTTT] consensusID : consensus_10695#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [ACAGCTCTGACAATTGAAGAAGTTAAGGGTAAAAAGATGACACTTTCCCCTGAAATTCCAGAACACTCCTACTTCTCTCGTTATGGTCCAGATTTCGAACTAGACATTGATTATTTTCCACACGAAAGTCATAATAAAACACTTGACAGTATACAAAAACATCATCGTCGTATACTTGAACAGTTACGTAATTATGCTGATCTAAATAAACTGATTTATGCCTATGATCAAGTGTATCAATTATATAATTTAACTGGTATGTAAAATGTAGCTATAAATTTATCCTCTGTTTACCATGGATTTATTGCTCCAAACGTTTTTACTGATGCGATTCTACAGTTTTATCTCTGTAAAGAAAAATACATATATGTTGTTTTCCAANAAAAAAAAAAAA] [-] EMBL AI395652 [ACAGCTCTGACAATTGAAGAAGTTAAGGGTAAAAAGATGACACTTTCCCCTGAAATTCCAGAACACTCCTACTTCTCTCGTTATGGTCCAGATTTCGAACTAGACATTGATTATTTTCCACACGAAAGTCATAATAAAACACTTGACAGTATACAAAAACATCATCGTCGTATACTTGAACAGTTACGTAATTATGCTGATCTAAATAAACTGATTTATGCCTATGATCAAGTGTATCAATTATATAATTTAACTGGTATGTAAAATGTAGCTATAAATTTATCCTCTGTTTACCATGGATTTATTGCTCCAAACGTTTTTACTGATGCGATTCTACAGTTTTATCTCTGTAAAGAAAAATACATATATGTTGTTTTCCAANAAAAAAAAAAAA] consensusID : consensus_10695#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 391 fasta sequence [TTTTTTTTTTTTTTTTTTTTAAACAGAGGATAAATTTATAGCTACATTTTACATACCAGTTAAATTATATAATTGATACACTTGATCATAGGCATAAATCAGTTTATTTAGATCAGCATAATTACGTAACTGTTCAAGTATACGACGATGATGTTTTTGTATACTGTCAAGTGTTTTATTATGACTTTCGTGTGGAAAATAATCAATGTCTAGTTCGAAATCTGGACCATAACGAGAGAAGTAGGAGTGTTCTGGAATTTCAGGGGAAAGTGTCATCTTTTTACCCTTAACTTCTTCAATTGTCAGAGCTGTAACTCTTGTCCATAATCTGGCTGTATCCGGGAAATTGTAGCCACCACCTCCAAGTATTAAAGTTGGGACTTTCCAAGGT] [+] EMBL AI395026 [TTTTTTTTTTTTTTTTTTTTAAACAGAGGATAAATTTATAGCTACATTTTACATACCAGTTAAATTATATAATTGATACACTTGATCATAGGCATAAATCAGTTTATTTAGATCAGCATAATTACGTAACTGTTCAAGTATACGACGATGATGTTTTTGTATACTGTCAAGTGTTTTATTATGACTTTCGTGTGGAAAATAATCAATGTCTAGTTCGAAATCTGGACCATAACGAGAGAAGTAGGAGTGTTCTGGAATTTCAGGGGAAAGTGTCATCTTTTTACCCTTAACTTCTTCAATTGTCAGAGCTGTAACTCTTGTCCATAATCTGGCTGTATCCGGGAAATTGTAGCCACCACCTCCAAGTATTAAAGTTGGGACTTTCCAAGGT] [-] EMBL CD145009 [ TAGCTACATTTTACATACCAGTTAAATTATATAATTGATACACTTGATCATAGTCATAAATCAGTTTATTTAGATCAGCATAATTACGTAACTGTTCAAGTATACGACGATGATGTTTTTGTATACTGTCAAGTGTTTTATTATGACTTTCGTGTGGAAAATAATCAATGTCTAGTTCGAAATCTGGACCATAACGAGAGAAGTAGGAGTGTTCTGGAATTTCAGGGGAAAGTGTCATCTTTTTACCCTTAACTTCTTCAATTGTCA ] consensusID : consensus_10695#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [TGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGCATGAAGCAGTGACTGCCTTTCACTCGTAAGTATTTCCGTAGATTATTAGAGTGGTCTAGTTTACTAATCAATCACTTTAATAAGTAAAATAAGTCAAATTCAGTACTTGAATCATAATTACTTAGCTACTTTCTTTTGTTGTCTACTTCTAACATTTAACAAAAAGTCAATTGGGCTAGTTAGGTTTTCTTAGTCGCTAACCACTTTGGACAAAAACCGGTTTTACTTTTGGACACTTTTAAAAGTATCTT] [+] EMBL CD125044 [TGGCGACAGATACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCATTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGCATGAAGCAGTGACTGCCTTTCACTCGTAAGTATTTCCGTAGATTATTAGAGTGGTCTAGTTTACTAATCAATCACTTTAATAAGTAAAATAAGTCAAATTCAGTACTTGAATCATAATTACTTAGCTACTTTCTTTTGTTGTCTACTTCTAACATTTAACAAAAAGTCAATTGGGCTAGTTAGGTTTTCTTAGTCGCTAACCACTTTGGACAAAAACCGGTTTTACTTTTGGACACTTTTAAAAGTATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10695#0 AATCCTCACAATCCCATCCTAATCAGAGTTACGAATAGCAAAGCTCTCGAGATAATGGAA 60 consensus_10695#1 ------------------------------------------------------------ consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ------------------------------------------------------------ consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 AGTAAGCGTAAATCCATCGGAAATTTATGTTCAAGTCTATGCCGTAAAATATATATATTT 120 consensus_10695#1 ------------------------------------------------------------ consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ------------------------------------------------------------ consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 CATTTATCCAGATAGCAGTACTGGCGACTCCTGAAATCTAGTACTTCTAAAAGTAAATGG 180 consensus_10695#1 ------------------------------------------------------------ consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 -----------------------------------------------ACTCGGCTCGAGG 13 consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 TTATGACTGATCGAGTTAATGGTCTAGTTCTGTGTTTATATTCACCAATCCATTTCATAT 240 consensus_10695#1 ------------------------------------------------------------ consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ACGATCCACATCGAATATTTCGTTTAACTAATTTTTACCCTAATTTAAATTTACATTCTG 73 consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 CTGATGTGCATCCCGTCCCGAATACCTGCCTATATTTTTGTACAGTAGGTTTATTGTCTT 300 consensus_10695#1 ------------------------------------------------------------ consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 AGTCGCAATCTGAATCTAAATTTAAATTAGGGTAAAAATTAGATTCAGATTGCGACTCAG 133 consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 TTCTAGCGGATTCAGTCCAAAGATGACCCACTGAAAAACTCCTCTCCAATCAAATTGCTG 360 consensus_10695#1 ------------------------------------------------------------ consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 AATGTAGTTTAAGTGGCTATTTGTACGCTATTAAGAAAATTTTATCATGGAAAGTTCCAA 193 consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 CCTAACAATGTCTGTTGGGATCGTTTATGGTGACCAGTATAGACAGCTGTGTTGCAGCTC 420 consensus_10695#1 ----------------------------------------------------TACAGCTC 8 consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 CTTTAATACTTGGAGGTGGTGGCTACAATTTTCCGGATACAGCCAGACTATGGACAAGAG 253 consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 ACCTAAGTTTGGCGACAGAT-ACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCA 479 consensus_10695#1 ACCTAAGTTTGGCGACAGAT-ACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCA 67 consensus_10695#5 ---------TGGCGACAGAT-ACGCCTTGGTCATGGATTTGATCAATGCATACAAACTCA 50 consensus_10695#2 TTACAGCTCTGACAATTGAAGAAGTTAAGGGTAAAAAGATGACACTTTCCCCTGAA---A 310 consensus_10695#3 --ACAGCTCTGACAATTGAAGAAGTTAAGGGTAAAAAGATGACACTTTCCCCTGAA---A 55 consensus_10695#4 -TTTTTTTTTTTTTTTTTTTTAAACAGAGGATAAATTTATAGCTACATTTTACATACCAG 59 * * ** * * * consensus_10695#0 TTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAG 539 consensus_10695#1 TTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGTATGAAG 127 consensus_10695#5 TTCCAGAACTTTCTCGTGTGCCTCCCTTGCAGTGGGATTCACCTAGTCGTATGCATGAAG 110 consensus_10695#2 TTCCAGAACACTCC----TACTTCTCTCGTTATGG------TCCAGAT-TTCGAACTAGA 359 consensus_10695#3 TTCCAGAACACTCC----TACTTCTCTCGTTATGG------TCCAGAT-TTCGAACTAGA 104 consensus_10695#4 TT---AAATTATATAATTGATACACTTGATCATAGGCATAAATCAGTTTATTTAGATCAG 116 ** ** * * * * ** consensus_10695#0 CAGTGACTGCCTT-TCACTCTACAGAAT-ATGTTGATGCTCTTAAAAAATTACAAATGCT 597 consensus_10695#1 CAGTGACTGCCTT-TCACTCTACAGAAT-ATGTTGATGCTCTTAAAAAATTACAAATGCT 185 consensus_10695#5 CAGTGACTGCCTT-TCACTC------GT-AAGT--ATTTCCGTAGATTATTAGAGTGGTC 160 consensus_10695#2 CATTGATTATTTT-CCACACAAAAG-TC-ATAATAAAACACTTGACAGTATACAAAAACA 416 consensus_10695#3 CATTGATTATTTT-CCACACGAAAG-TC-ATAATAAAACACTTGACAGTATACAAAAACA 161 consensus_10695#4 CA-TAATTACGTAACTGTTCAAGTATACGACGATGATGTTTTTGTATACTGTCAAGTGTT 175 ** * * * * * * * * * consensus_10695#0 TCACTGTGAGGAG---AAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAG 654 consensus_10695#1 TCACTGTGAGGAG---AAAGAATTGACTGCTGATGACGAGTTACTTATGGATTCATTTAG 242 consensus_10695#5 TAGTTTACTAATC---AATCACTTTAATAAGTAAAATAAGTCA------AATTCAGT--A 209 consensus_10695#2 TCATCGTCGTATACTTGAACAGTTACGTAATTATGCTGATCTAA--ATAAAACACTTGAC 474 consensus_10695#3 TCATCGTCGTATA----------------------------------------------- 174 consensus_10695#4 TTATTATGACTTTCGTGTGGAAAATAATCAATGT-CTAGTTCGAAATCTGGACCATAACG 234 * consensus_10695#0 TCTGAATTATGACTGCCCTGGT-TTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTC 713 consensus_10695#1 TCTGAATTATGACTGCCCTGGT-TTTCCTAGTGTTTTCGATTATTCGTTAGCTGCTGTTC 301 consensus_10695#5 CTTGAATCATAATTACTTAGCTACTTTCTTTTGTTGTCTACT-TCTAACATTTAACAAA- 267 consensus_10695#2 AGTATACAAAAACATCATCGTCGTATACTTGAACAGTTACGTAATTATGCTGATCTAAAT 534 consensus_10695#3 ---------------------------CTTGAACAGTTACGTAATTATGCTGATCTAAAT 207 consensus_10695#4 AGAGAAGTAGGAGTGTTCTGGAATTTCAGGGGAAAGT------GTCATCTTTTTACCCTT 288 * consensus_10695#0 AAGGTAGTTTA--GCTG-CAGCTAGTGCTTTAATC-TGTCGTC--ATTGTGAGGTCGTTA 767 consensus_10695#1 AAGGTAGTTTA--GCTG-CAGCTAATGCTTTAATC-TGTCGTC--ATTGTGAGGTAA--- 352 consensus_10695#5 AAGTCAATTGG--GCTA-GTTAGGTTTTCTTAGTC-GCTAACC--ACTTTGGACAAA--- 318 consensus_10695#2 AAACTGATTTATGACTATGATCAAGTGTATCAATTATATAATTTAACTGGTATGTAAAAT 594 consensus_10695#3 AAACTGATTTATGCCTATGATCAAGTGTATCAATTATATAATTTAACTGGTATGTAAAAT 267 consensus_10695#4 AACTTCTTCAATTGTCA-GAGCTGTAACTCTTGTC-CATAATCTGGCTGTATCCGGGA-- 344 ** * * * * consensus_10695#0 TCAACTGGGGCGGTGGGTGGCATCATGCCAAGAGAAGTGAGGCTTCTGGATTTTGCTATT 827 consensus_10695#1 --AACT----CTTTACACTTCATCTTCAGGGTAAAAGTATCGATTGAGTATTATAATACT 406 consensus_10695#5 --AACCGG--TTTTACTTTTGGACACTTT--TAAAAGTATCTT----------------- 355 consensus_10695#2 GTAGCTATAAATTTATCCTCTGTTTACCA--TGGATTTATTGCTCCAA-ACGTTNTTACT 651 consensus_10695#3 GTAGCTATAAATTTATCCTCTGTTTACCA--TGGATTTATTGCTCCAA-ACGTTTTTACT 324 consensus_10695#4 --AATTGTAGCCACCACCTCCAAGTATTA--AAGTTGGGACTTTCCAAGGT--------- 391 * consensus_10695#0 TAAATGATATCGTTTTGGCCATCCATCGACTGGTCTCATCAACCCCACCAGAAACTTCAC 887 consensus_10695#1 TAGTTN--------TTTGTCATTCCT--GTT--TCCTATTAAACACAACGTTGTGTTTCT 454 consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 GATGCGA-------TTCTACAGTTT----------------------------------- 669 consensus_10695#3 GATGCGA-------TTCTACAGTTTTATCTCTGTAAAGAAAAATACATATATGTTGTTTT 377 consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 CCAACAGACAAACACGAGTATTGTATGTTGACCTTGATCT--CCATCATGGTGATGGAGT 945 consensus_10695#1 ATTATTGTTG---------TTTGTGTTCCACCTCTGATTTAGCCATAACTTAAGTAAAAT 505 consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ------------------------------------------------------------ consensus_10695#3 CCAANAAAAAAAAAAAA------------------------------------------- 394 consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 AGAAGAAGCTTTCTGGTATAGTCCTCGTGTAGTTACGTTCTCTGTACATCATGCCTCTCC 1005 consensus_10695#1 AAGTTGAGTTTTTTTTTAATTTTAAAGTGAATTCTAAATCCCAGAAGA----AATTCTCG 561 consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ------------------------------------------------------------ consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 TGGTTTCTTTCCCNGTACAGGCACCTGGAATA-TGGTCGACAATGATAAATTACCGATTT 1064 consensus_10695#1 TCAAAAAACAACAGTCATTGTTA--TAAAATACTTTTTAAGAAAAATTGTTTGCTATTTT 619 consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ------------------------------------------------------------ consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 TCCTAAATGGCGCTGGTCGTGGCAGGTTCTCGGCATTCAATTTGCCACTAGAAGAAGGCA 1124 consensus_10695#1 TGGGTAATAAGGTGTTTTATTCCTTTCCCTTCGTGTA-AGATCGACTTTATCACA----- 673 consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ------------------------------------------------------------ consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 TCAATGATTTGGACTGGTCAAATGCTATTGGCCCTATACTTGATTCTCTTAACATAGTTA 1184 consensus_10695#1 ------------------------------------------------------------ consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ------------------------------------------------------------ consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 TTCAACCAAGTTATGTTGTAGTTCAATGCGGAGCCGATTGTTTAGCTACTGATCCACATC 1244 consensus_10695#1 ------------------------------------------------------------ consensus_10695#5 ------------------------------------------------------------ consensus_10695#2 ------------------------------------------------------------ consensus_10695#3 ------------------------------------------------------------ consensus_10695#4 ------------------------------------------------------------ consensus_10695#0 GAATATTTCGTTTAACTAATTTTTACCCTAATTTAAATTTAAATTC 1290 consensus_10695#1 ---------------------------------------------- consensus_10695#5 ---------------------------------------------- consensus_10695#2 ---------------------------------------------- consensus_10695#3 ---------------------------------------------- consensus_10695#4 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||