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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1138 fasta sequence
[TTTTTCATAACCCTTACAGTTTTTATAGTTCTGTACATCAAGTAGGTCATTAATAAGAAAATAATACAAATACTTGCACAAATGGAAACTTTATATACATCTGACAACGAAAATTGTTTCGCACCTACATAAAATTTGTTTCTAAAAAAGATGTACATATATAATATATTCTTTTAGACAAATTTCACTTTCTTCGCAGCATTTGATGGGTGTAGAGCACTGCGTTCTTGTGCAACCTTCTGAGCTTTTTCAACCAGACTAGTCAGTTGACCGTTTTCGCCCAGTATTTTGAGAAGCTCTAATATAAGTGGCAAATAGTTGTGTCGACGACGAATGTTTTCTGCGCGATACGTTGCAATTTTCTTCTTTTCACTGGCG-ATATTATTCGTTAGCTCTGTTATGTAGGCAGATTCTGGATCACTTGAGTCTATTTTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAATTGCTAAAGCTGTTATGTACAACTCTAATTTGAT-CAGAATTGCTTATTGCTGTACC-TTTCATTGTACTGTC-AATTCTGA-CACAAAAGAC-TTG-AAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTT-AGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTTTCTAC------ACCTCTAATAAGTTCAGTGAATACTCCGGGATCGCTTTCTATCAAACACCAATTACCACTACTTGACAAGCTTGAAGCTTG]
[-] EMBL CD073338 [TTTTTCATAACCCTTACAGTTTTTATAGTTCTGTACATCAAGTAGGTCATTAATAAGAAAATAATACAAATACTTGCACAAATGGAAACTTTATATACATATGTCAACGAAAATTGTTTCGCACATACATAAAATTTGTTTTTAAAAAAGATGTACATATATAATATATT ]
[+] EMBL CD075030 [ GAAACTTTATACTCATCTGACAACGAAAATTGTTTCGCACCTACATAAAATTTGTTTCTAAAAAAGATGTACATATATAATATATTCTTTTAGACAAATTTCACTTTCTTCGCAGCATTTGATGGGTGTAGAGCACTGCGTTCTTGTGCAACCTTCTGAGCTTTTTCAACCAGACTAGTCAGTTGACCGTTTTCGCCCAGTATTTTGAGAAGCTCTAATATAAGTGGCAAATAGTTGTGTCGACGACGAATGTTTTCTGCGCGATACGTTGCAATTTTCTTCTTTTCACTGGCG ATATTATTCGTTAGCTCTGTTATGTAGGCAGATTCTGGATCACTTGAGTCTATTTTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAATTGCTAAAGCTGTTATGTACAACTCTAATTTGAT CAGAATTGCTTATTGCTGTACC TTTCATTGTACTGTC AATTCTGA CAC AAAGAC TTG AAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCA ]
[+] EMBL CD074864 [ GAAACTTTATATACATCTGACAACGAAAATTGTTTCGCACCTACATAAAATTTGTTTCTAAAAAAGATGTACATATATAATATATTCTTTTAGACAAATTTCACTTTCTTCGCAGCATTTAATGGGTGTAGAGCACTGCGTTCTTGTGCAACCTTCTGAGCTTTTTCAACCAGACTAGTCAGTTGACCGTTTTCGCCCAGTATTTTGAGAAGCTCTACTATAAGTGGCAAATAGTTGTGTCGACGACGAATGTTTTCTGCGCGATACGTTGCAATTTTCTTCTTTTCACTGGCG ATATTATTCGTTAGCTCTGTTATGTAGGCAGATTCTGGATCACTTGAGTCTATTTTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAATTGCTAAAGC ]
[+] EMBL CD075271 [ GAAACTTTATATACATCTGACAACGAAAATTGTTTCGCACCTACATAAAATTTGTTTCTAAAAAAGATGTACATATATAATATATTCTTTTAGACAAATTTCACTTTCTTCGCAGCATTTGATGGGTGTAGAGCACTGCGTTCTTGTGCAACCTTCTGAGCTTTTTCAACCAGACTAGTCAGTTGACCGTTTTCGCCCAGTATTTTGAGAAGCTCTACTATAAGTGGCAAATAGTTGTGTCGACGACGAATGTTTTCTGCGCGATACGTTGCAATTTTCTTCTTTTCACTGGCG ATATTATTCGTTAGCTCTGTTATGTAGGCAGATTCTGGATCACTTGAGTCTATTTTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGA ]
[-] EMBL CD081200 [ AACTTTATAT CATCTGAC ACGAAAATTGTNTCGCACCTACATAAAA TTGTTTCTAAAAAAGATGTACATATATAATAT TTCTTTTAGACAAATTTCACTTTCTTCGCAGCATTTGNTGGGTGTAGAGCACTGCGTTCTTGTGCAACCTTCTGAGCTTTTTCAACCAGACTAGTCAGTTGACCGTTTTCGCCCAGTATTTTGAGAAGCTCTAATATAAGTGGCAAATAGTTGTGTCGACGNCGAATGTTTTCTGCGCGATACGTTGCAATTTTCTTCTTTTCACTGGCGNATATTATTCGTTAGCTCTGTTATGTAGGCAGATTCTGGATCACTTGAGTCTATTTTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATC ACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATA GGACGTAACCAACNAAAT GT AACACCTTCACTTGACTTT GGGTCTTCTCATCAAACTCAAAAAGCTGGTAATTGCTAAAGCTGTTATGTACAACTCTAATTTGTTCCANAA TGCTTA ]
[-] EMBL CD078581 [ tnTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAATTGCTAAAGCTGTTATGTACAACTCTAATTTGAT CAGAATTGCTTATTGCTGTACC TTTCATTGTACTGTCAAATTCTGA CACAAAAGAC TTG AAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTT AGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACCCAAAAGCGTCAGACACGTTGC ]
[-] EMBL CD137493 [ GCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGTTNTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAATTGCTAAAGCTGTTATGTACAACTCTAATTTGAT CAGAATTGCTTATTGCTGTACC TTTCATTGTACTGTCAAATTCTGA CACAAAAGAC TTG AAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTT AGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTTTCTAC AC ]
[-] EMBL BE431296 [ atTCTAATTTGAT CAGAATTGCTTATTGCTGTACN TTTCATTGTACTGTCAAATTCTGA CACAAAAGACTTTG AAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTT AGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTTTGTTTCGCAAAAAATATGCCCNTATTGTTTGCGTCATTNACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTTTNTACACCAAAACCTCTAATAAGTTCAGTGAATACTCCGGGATCGCTTTCTATCAAACACCAATTACCACTACTTGACAAGCTTG ]
[-] EMBL BE431294 [ tTCTAATTTGAT CAGAATTGCTTATTGCTGTACCTTTTCATTGTACTGTCAAATTCTGA CACAAAAGAC TTG AAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTT AGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTTTCAAA ACCTCTAATAAGTTCAGTGAATACTCCGGGATCGCTTTNTATCAAACACCAATTACCACTACTTGACATTGTTGAAGCTTG]
[-] EMBL BE431295 [ ca AATTTTGACCNCAAAAAAC TTGAAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAAGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGNAATTGTTTGTTTCGCAAAAAATATGCCCCTATTGTNTGGGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACCCAAAAGNGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAANTTTTTCGCACTCCAAACTTTCAAA ACCTCTAATAAGTTCAGTGAATACTCCGGGATCGCTTTCTATCAAACACCAATTACCACTACTTG ]
consensusID : consensus_10699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence
[AACTTTANTATACATCTGACACGAAAAATGTTTTCGCACNTACATAAAATTGTTTCTAAAAAAGATGTACATATATAATATATCTNTTAGACNAATTTNNNNNNNNNNNNNNNNTAATGGGTGTAGAGCACTGCGTTCTTGTGCAACTTCTGAGCTTTTCAACCAGACTAGTCAGTTGACCGTTTTCGCCCAGTATTTGAGAAGCTCTACTATAAGTGGCAAATAGTTGTGTCGACGACGAATGTTTTCTGCGCGATACGTTGCAATTTTCTTCTTTTCACTGGCGATATTATTCGTACTTGAGTCTATTTTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAATAATTTGATCAGAATTGCTTATTGCTGTACCTTTCATTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAAATTGTTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCCCTC]
[-] EMBL CD081036 [AACTTTANTATACATCTGACACGAAAAATGTTTTCGCACNTACATAAAATTGTTTCTAAAAAAGATGTACATATATAATATATCTNTTAGACNAATTTNNNNNNNNNNNNNNNNTAATGGGTGTAGAGCACTGCGTTCTTGTGCAACTTCTGAGCTTTTCAACCAGACTAGTCAGTTGACCGTTTTCGCCCAGTATTTGAGAAGCTCTACTATAAGTGGCAAATAGTTGTGTCGACGACGAATGTTTTCTGCGCGATACGTTGCAATTTTCTTCTTTTCACTGGCGATATTATTCGTACTTGAGTCTATTTTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAATAATTTGATCAGAATTGCTTATTGCTGTACCTTTCATTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAAATTGTTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCCCTC]
consensusID : consensus_10699#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 649 fasta sequence
[GTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAACTAAGTACATATTAGCAATACAGAGGAAAATTACTTGCTAAAGCTGTTATGTACAACTCTAATTTGATCAGAATTGCTTATTGCTGTACCTTTCATTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTCTAACAGAAATGTATGAACAACTAATACACTACTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAAC-CCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTTTCTACACCAAAACCTCT-AATAAGTTCAGTGAA]
[-] EMBL CD081448 [GTCTACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCCCATCAAACTCAAAAAGCTGGTAACTAAGTACATATTAGCAATACAGAGGAAAATTACTTGCTAAAGCTGTTATGTACAACTCTAATTTGATCAGAATTGCTTATTGCTGTAC ]
[+] EMBL CD145230 [ GTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAACTAAGTACATATTAGCAATACAGAGGAAAATTACTTGCTAAAGCTGTTATGTACAACTCTAATTTGATCAGAATTGCTTATTGCTGTACCTTTCATTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTCTAACAGAAATGTATGAACAACTAATACACTACTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAAC CCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTTTCTACACCAAAACCTCT AATAAGTTCAGTGAA]
[+] EMBL CD145310 [ GTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAACTAAGTACATATTAGCAATACAGAGGAAAATTACTTGCTAAAGCTGTTATGTACAACTCTAATTTGATCAGAATTGCTTATTGCTGTACCTTTCATTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTCTAACAGAAATGTATGAGCAACTAATACACTACTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACNCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTTTCTACACCAAAACCTCTAAATAAG TCAGTGg ]
[+] EMBL CD145286 [ GTACAAAGTACTATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAACTAAGTACATATTAGCAATACAGAGGAAAATTACTTGCTAAAGCTGTTATGTACAACTCTAATTTGATCAGAATTGCTTATTGCTGTACCTTTCATTGCACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTCTAACAGAAATGTATGAACAACTAATACACTACTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAAC CCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTTTCTACACCAAAACCTCT AATAAGTTCAGTGAA]
[+] EMBL CD145330 [ GTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCTTCTCACCAAACTCAAAAAGCTGGTAACTAAGTACATATTAGCAATACAGAGGAAAATTACTTGCTAAAGCTGTTATGTACAACTCTAATTCGATCAGAATTGCTTATTGCTGTACCTTTCATTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTCTAACAGAAATGTATGGACAACTAATACACTACTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAAC CCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATAAACTTCTTCGCACTCCAAACTNTCTACACCAAAACCTCT AATAAAGTCAGTGA ]
consensusID : consensus_10699#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence
[AGGGNNACCGTTTTCCCCNGGTATTTTNAGAAGCTCTACTATAAGT-GCAAATAGTTGTGTCGACGACNAATGTTTTCTGCACNATACGNNGCAATTTTCTTNTTTTCACTGGCGATATTATTC-NTNANCTCTGTTATGNANGCAGATTCTGGATCACTTGANTNTATTTTATATCCCGCCAACTGTTTTTCATACATAACGAGTCNATTAAGAACTACNGCCATTATATTGAACTTTCCGNCTACACATTTCTCCATACNCTTNATTANCAACNGNCNGACCNAATTTATNCAAGANNAATTCTNAGGTAGTTTTCCNTGATCAACAGGGNCGGGTTTTAANCCATCCAATTCCTACAAAGTACCATTAATANGGACGTNACCAACNGANNTGGNAACACCTCTACTTGACTTNGGGGTCTTCTCATAAAACNCAAAAAGCTGGTNATTTGCTAAAGCTTTTA]
[+] EMBL BE431290 [AGGGNNACCGTTTTCCCCNGGTATTTTNAGAAGCTCTACTATAAGT GCAAATAGTTGTGTCGACGACNAATGTTTTCTGCACNATACGNNGCAATTTTCTTNTTTTCACTGGCGATATTATTC NTNANCTCTGTTATGNANGCAGATTCTGGATCACTTGANTNTATTTTATATCCCGCCAACTGTTTTTCATACATAACGAGTCNATTAAGAACTACNGCCATTATATTGAACTTTCCGNCTACACATTTCTCCATACNCTTNATTANCAACNGNCNGACCNAATTTATNCAAGANNAATTCTNAGGTAGTTTTCCNTGATCAACAGGGNCGGGTTTTAANCCATCCAATTCCTACAAAGTACCATTAATANGGACGTNACCAACNGANNTGGNAACACCTCTACTTGACTTNGGGGTCTTCTCATAAAACNCAAAAAGCTGGTNATTTGCTAAAGCTTT ]
[+] EMBL BE431288 [ AGCTCTACTATAAGTGGCAAATAGTTGTGTCGACGACNAATGTTTTCTGCNCNATACGNNGCAATTTTCTTNTTTTCACTGGCGATATTATTCGNT AGCTCTGTTATGNANGCAGATTCTGGATCACTTGANTNTATTTTATATCCCGCCAACTGTTTTTCATACATAACGAGTCNATTAAGAACTACNGCCATTATATNGAACTTTCCGNCTACACATTTCTCCATACNCTTNATTAGCAACGGNCNGACCNAATNTATCCAAGATGAATTCTNAGGTAGTTTTCCNTGANCAACAGGGCCGGGTTTTAANCCATCCAATTCCAACAAAGNACCATTAATAGGGACGCNACCAAC GAANTGGNANCACCTTCACTTGACTTNGGGGTCTTATCATCAAACTCAAAAAGCTGGTNA TTGCTAAAGCTGTTA]
consensusID : consensus_10699#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[CAAATTTCATACTGTACTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTCTAACAGAAATGTATGAACAACTAATACACTACTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCAGCCTCGTGCCGAATCTTGGCT]
[-] EMBL CD081447 [CAAATTTCATACTGTACTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAAGATATTAATAATTGCTTGCGTCGCACAAGCATTTGGAATTGTCTAACAGAAATGTATGAACAACTAATACACTACTTGTTTCGCAAAAAATATGCCCCTATTGTTTGCGTCATTTACCACTTTTCCAGTCTCATCTTGTTTGTCATCATAGTTAAATAGGAAAATAAACCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCAGCCTCGTGCCGAATCTTGGCT]
consensusID : consensus_10699#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence
[GNGAAATGGGGCAANTATNGTCTTTNGATCATTAANGCGAAGATAATAGATANTTTNCTTGCNTNGCNCCAAGGCATNAGNAAATTGTTTGTTTTGCAANAAATATGCCCCCTATTGTTTGNGTCATTTACCAATTTTNCAGTNTCATGTTGTTTGTCATCATAGTTAAATGAAAATAAACCCAAAAGCGTCAGANACGTTGCTTGTTTNGGTCAAATCATAAATTTATTGGCANTNCAAACTTTTTACNCCAAAACCTNTAATAAGTTCAGTGAATACTCCGGGATCGCTTTNTATCAAACACCAATTACCA]
[-] EMBL BE431297 [GNGAAATGGGGCAANTATNGTCTTTNGATCATTAANGCGAAGATAATAGATANTTTNCTTGCNTNGCNCCAAGGCATNAGNAAATTGTTTGTTTTGCAANAAATATGCCCCCTATTGTTTGNGTCATTTACCAATTTTNCAGTNTCATGTTGTTTGTCATCATAGTTAAATGAAAATAAACCCAAAAGCGTCAGANACGTTGCTTGTTTNGGTCAAATCATAAATTTATTGGCANTNCAAACTTTTTACNCCAAAACCTNTAATAAGTTCAGTGAATACTCCGGGATCGCTTTNTATCAAACACCAATTACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 TTTTTCATAACCCTTACAGTTTTTATAGTTCTGTACATCAAGTAGGTCATTAATAAGAAA 60
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 ATAATACAAATACTTGCACAAATGGAAACTTTATATACATCTGACAACGAAAATTGTTTC 120
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 GCACCTACATAAAATTTGTTTCTAAAAAAGATGTACATATATAATATATTCTTTTAGACA 180
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 AATTTCACTTTCTTCGCAGCATTTGATGGGTGTAGAGCACTGCGTTCTTGTGCAACCTTC 240
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 TGAGCTTTTTCAACCAGACTAGTCAGTTGACCGTTTTCGCCCAGTATTTTGAGAAGCTCT 300
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 AATATAAGTGGCAAATAGTTGTGTCGACGACGAATGTTTTCTGCGCGATACGTTGCAATT 360
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 TTCTTCTTTTCACTGGCGATATTATTCGTTAGCTCTGTTATGTAGGCAGATTCTGGATCA 420
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 CTTGAGTCTATTTTATATCGCGCCAACTGTTTTTCATACATAACGAGTCGATTAGGAACT 480
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 -----------------------GTCTACACATTTCTCCATACGCTTCATTAGCAACGGA 37
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 ACTGCCATTATATTGAACTTTCCGTCTACACATTTCTCCATACGCTTCATTAGCAACGGA 540
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 CGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGT 97
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 CGGACCGAATCTATCCAAGATGAATTCTCAGGTAGTTTTCCGTGATCAACAGGGCCGGGT 600
consensus_10699#1 ------------------------------------------------------------
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 TTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAA 157
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 TTTAAGCCATCCAATTCGTACAAAGTACCATTAATAGGGACGTAACCAACGAAATGGTAA 660
consensus_10699#1 ----AACTTTANTATACATCTGACACGAAAAATGTTTTCGCACNTACATAAAATTGTTTC 56
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAACTAAGTACA 217
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 ACACCTTCACTTGACTTTGGGGTCTTCTCATCAAACTCAAAAAGCTGGTAA--------- 711
consensus_10699#1 TAAAAAAGATGTACATATATAATATATCTNTTAGACNAATTTNNNNNNNNNNNNNNNNTA 116
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 TATTAGCAATACAGAGGAAAATTACTTGCTAAAGCTGTTATGTACAACTCTAATTTGATC 277
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 -------------------------TTGCTAAAGCTGTTATGTACAACTCTAATTTGATC 746
consensus_10699#1 ATGGGTGTAGAGCACTGCGTTCTTGTGCAACTTCTGAGCTTTTCAACCAGACTAGTCAGT 176
consensus_10699#3 --------------------------------------------------------AGGG 4
consensus_10699#2 AGAATTGCTTATTGCTGTACCTTTCATTGTACTGTCA-AATTCTGACACAAAAGACTTGA 336
consensus_10699#4 --------CAAATTTCATACTGT--ACTGTACTGTCA-AATTCTGACACAAAAGACTTGA 49
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 AGAATTGCTTATTGCTGTACCTTTCATTGTACTGTCA-A-TTCTGACACAAAAGACTTGA 804
consensus_10699#1 TGACCGTTTTCGCCCAGTATTT-GAGAAGCTCTACTATAAGTGGCAAATAGTTGTGTCGA 235
consensus_10699#3 NNACCGTTTTCCCCNGGTATTTTNAGAAGCTCTACTATAAGTG-CAAATAGTTGTGTCGA 63
consensus_10699#2 AATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAA-GATATTAATA 395
consensus_10699#4 AATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAA-GATATTAATA 108
consensus_10699#5 -----------------------------------GNGAAATGGGGCAA-N-TATNGTCT 23
consensus_10699#0 AATTAGACAATGTTGGGCCAATGGGCACTTTGTCATCAATATTTAGCAA-GATATTAATA 863
consensus_10699#1 CGACGAATGTTTTCTGCGCGATACGTTGCAATTTTCTTCTTTTCACTGGCGATATTATTC 295
consensus_10699#3 CGACNAATGTTTTCTGCACNATACGNNGCAATTTTCTTNTTTTCACTGGCGATATTATTC 123
* ***
consensus_10699#2 ATTGCTTGCGTCGCACAAGCA------------TTTGGAATTGTCTAACAGAAATGTATG 443
consensus_10699#4 ATTGCTTGCGTCGCACAAGCA------------TTTGGAATTGTCTAACAGAAATGTATG 156
consensus_10699#5 TTNGATCAT-TAANGCGAAGA------------TAATAGATANTTTNCTTGCNTNGCNCC 70
consensus_10699#0 ATTGCTTGCGTCGCACAAGCA------------TTTGGAATTGT---------------- 895
consensus_10699#1 GTA------------------------------CTTGAGTCTATTTTATATCGCGCCAAC 325
consensus_10699#3 NTNANCTCTGTTATGNANGCAGATTCTGGATCACTTGANTNTATTTTATATCCCGCCAAC 183
* *
consensus_10699#2 AACA-ACTAATACACTACTTGTTTCGCAAAAAATATGCCCC---TATTGTTTGCGTCATT 499
consensus_10699#4 AACA-ACTAATACACTACTTGTTTCGCAAAAAATATGCCCC---TATTGTTTGCGTCATT 212
consensus_10699#5 AAGGCATNAGNAAATTGTTTGTTTTGCAANAAATATGCCCCC--TATTGTTTGNGTCATT 128
consensus_10699#0 ------------------TTGTTTCGCAAAAAATATGCCCC---TATTGTTTGCGTCATT 934
consensus_10699#1 TGTT-TTTCATACATAACGAGTCGATTAGGAACTACTGCCATTATATTGAACTTTCCGTC 384
consensus_10699#3 TGTT-TTTCATACATAACGAGTCNATTAAGAACTACNGCCATTATATTGAACTTTCCGNC 242
** * ** ** ** ***** *
consensus_10699#2 TAC-CACTTTTCCAGTCTCATC-TTGTTTGTCATCATAGTTAAATAGGAAAATAAA---- 553
consensus_10699#4 TAC-CACTTTTCCAGTCTCATC-TTGTTTGTCATCATAGTTAAATAGGAAAATAAA---- 266
consensus_10699#5 TAC-CAATTTTNCAGTNTCATG-TTGTTTGTCATCATAGTTAAAT--GAAAATAAA---- 180
consensus_10699#0 TAC-CACTTTTCCAGTCTCATC-TTGTTTGTCATCATAGTTAAATAGGAAAATAAA---- 988
consensus_10699#1 TACACATTTCTCCATACGCTTCATTAGCAACGGACGGACCGAATCTATCCAA-------- 436
consensus_10699#3 TACACATTTCTCCATACNCTTNATTANCAACNGNCNGACCNAATTTATNCAAGANNAATT 302
*** ** ** * ** * * ** * * ** **
consensus_10699#2 ------------CCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATA-AACTT 600
consensus_10699#4 ------------CCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATC--A-GCCTC 311
consensus_10699#5 ------------CCCAAAAGCGTCAGANACGTTGCTTGTTTNGGTCAAATCATA-AATTT 227
consensus_10699#0 ------------CCCAAAAGCGTCAGACACGTTGCTTGTTTCGGTCAAATCATA-AACTT 1035
consensus_10699#1 ------------------ATCAACAGGGCCGGGTTTTAAGCCATCCAATTCGTACAAAGT 478
consensus_10699#3 CTNAGGTAGTTTTCCNTGATCAACAGGGNCGGGTTTTAANCCATCCAATTCCTACAAAGT 362
* * *** ** ** *** ** *
consensus_10699#2 CTTCGCACTCCAAACTTTCTACACCAAAACCTCTAATAAGTTCAGTGAA----------- 649
consensus_10699#4 GTGCCGAATCTTGGCT-------------------------------------------- 327
consensus_10699#5 ATTGGCANTNCAAACTTTTTACNCCAAAACCTNTAATAAGTTCAGTGAATACTCCGGGAT 287
consensus_10699#0 CTTCGCACTCCAAACTTTCTACACC------TCTAATAAGTTCAGTGAATACTCCGGGAT 1089
consensus_10699#1 ACCATTAATAGGGACGTAAC-CAACGAAATGGTAAACACCTTCACTTGACTTTGGGGTCT 537
consensus_10699#3 ACCATTAATANGGACGTNAC-CAACNGANNTGGNAACACCTCTACTTGACTTNGGGGTCT 421
* * *
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 CGCTTTNTATCAAACACCAATTACCA---------------------------------- 313
consensus_10699#0 CGCTTTCTATCAAACACCAATTACCACTACTTGACAAGCTTGAAGCTTG----------- 1138
consensus_10699#1 TCTCATCAAACTCAAAAAGCTGGTAATAATTTGATCAGAATTGCTTATTGCTGTACCTTT 597
consensus_10699#3 TCTCATAAAACNCAAAAAGCTGGTNA---TTTGCTAAAGCTT--TTA------------- 463
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 ------------------------------------------------------------
consensus_10699#1 CATTGTACTGTCAAATTCTGACACAAAAGACTTGAAATTAGACAATGTTGGGCCAATGGG 657
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ------------------------------------------------------------
consensus_10699#4 ------------------------------------------------------------
consensus_10699#5 ------------------------------------------------------------
consensus_10699#0 ------------------------------------------------------------
consensus_10699#1 CACTTTGTCATCAATATTTAGCAAGATATTAATAAATTGTTTGTTTCGCAAAAAATATGC 717
consensus_10699#3 ------------------------------------------------------------
consensus_10699#2 ---------------------------
consensus_10699#4 ---------------------------
consensus_10699#5 ---------------------------
consensus_10699#0 ---------------------------
consensus_10699#1 CCCTATTGTTTGCGTCATTTACCCCTC 744
consensus_10699#3 ---------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||