These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 602 fasta sequence [AATTTTTTCTTCACATTATTTGTTTAGCAAAATACCAT-CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC-AATAGCAG-GATCATATTTTAGTCCCAGGTCAATATGTTCTGT-CAG-T-CCAAA-GCCGA-AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA-CCA-TTGTGCGCAGATATACGAACTAATCACGCTTGCGTACGGACGCGC] [+] EMBL CD074038 [AATTTTTTCTTCACATTATTTGTTTAGCAAAATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATACGAACTAA ] [-] EMBL CD079780 [ ATTTTTTCTTCACATTATTTGTTTAGCAAAATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAACCCANTTGTGCGC ] [-] EMBL SM591 [ ATTTTTTCNTTNCATTATTTGTTTANCCAAANACCATCCAAACTTTGTNTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGAATATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTAANGCGCATCCCAGGTCTGCCCCAAATGACGTAGAAGTTCAATCCATTAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA TCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTANTCCNTCACCTTTAGACCCTTTTCCCAAATTTC ] [-] EMBL CD147612 [ TTTACATTATTTGTTTAGCAAAATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGCTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGGAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGA ] [+] EMBL BG930864 [ AAAATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGTTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAAAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAA ] [+] EMBL SMAA25687 [ ATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGCCCTNTGAACAGCAATTTTCTCGTTACGTCT ] [-] EMBL CD081964 [ TACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATACGAACTAATCACGCTTGCGTACGG ] [-] EMBL AI976190 [ TCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCACAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACNCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATA ] [-] EMBL CD157830 [ TTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATACGAACTAATCACGCTCGCGTACGGACGCGC] [-] EMBL AI975766 [ GGACATGATGAATATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCNCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATACGAACTAATCACGCTTGCGTACGGAC ] [-] EMBL BE505101 [ ACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGG ] [+] EMBL BG932850 [ TGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGA CTG ACAGAACAtat ] [-] EMBL CD134811 [ CCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCA ] [-] EMBL CD199574 [ AATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATATAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTG ] [+] EMBL CD060413 [ ATTCCAAATAGCAGAGATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTACTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAAAACAAATATCAAGACATAGTTTCTGGATTTTT ] [+] EMBL CD060407 [ AG G TCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTACTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTT ] [+] EMBL BG930888 [ tTCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGTTTTTGGA ] [+] EMBL CD060474 [ TGTTCTGTGCAGCTACCAAAGGCCGACAGTGTCCGGATTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTT ] [-] EMBL CD170986 [ T CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAA ] consensusID : consensus_10700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [TGAGCAGTAGCTTAGTTAAGCTAACCGGATGCATATAAATTTTCGAACCTGGGTGTATATACACACTAACTACTAAAACGACTTAATGAACTATATGATCGAGCTATATATCAACGTATTCATCCTAATACTGACTCATCAACAAGGATCCAATAGTCTAGCACTCAGATTATAAGCTTATTTAAAGAAGTGCCATGACATATAAGAACCAGATAATAAACGCCAGAATTTTTTCTTCACATTATTTGTTTAGCAAAATACCATCAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCTAGTTAAAAAATTTAGTCACTGAAAGTACAA] [-] EMBL CD087323 [TGAGCAGTAGCTTAGTTAAGCTAACCGGATGCATATAAATTTTCGAACCTGGGTGTATATACACACTAACTACTAAAACGACTTAATGAACTATATGATCGAGCTATATATCAACGTATTCATCCTAATACTGACTCATCAACAAGGATCCAATAGTCTAGCACTCAGATTATAAGCTTATTTAAAGAAGTGCCATGACATATAAGAACCAGATAATAAACGCCAGAATTTTTTCTTCACATTATTTGTTTAGCAAAATACCATCAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCTAGTTAAAAAATTTAGTCACTGAAAGTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10700#0 -----AATTTTTTCTTCACATTATTTGTTTAGCAAAATACCATCAAACTTTGTTTGAAAC 55 consensus_10700#1 TGAGCAGTAGCTTAGTTAAGCTAACCGGATGCATATAAATTTTCGAACCTGGGTGTATA- 59 * * ** * * ** * * * * * ** *** * * * * * consensus_10700#0 CATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGA 115 consensus_10700#1 ---TACACACTAACTACTAAAACGACTTAATGA--ACTATATGATCGAGCTATATATCAA 114 * ** ** * *** * **** * * ** * * * * * consensus_10700#0 CGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAA 175 consensus_10700#1 CGTATTCATCCTA-----ATACT-GACTCATCAACAAGGATCCAATAGTCTAGCACTCAG 168 *** *** * ** * * * * ** ** * *** * * * consensus_10700#0 ATTCCAATAGCAGGATCATATTTTAGTCCCAGGTCA-ATATGTTCTGTCAGTCCAAAGCC 234 consensus_10700#1 ATTATAA--GCTTATTTAAAG--AAGTGCCATGACATATAAGAACCAGATAATAAACGCC 224 *** ** ** * * * *** *** * ** *** * * ** *** consensus_10700#0 GAAGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACC 294 consensus_10700#1 AGAATTTT---TTCTTCACATTATTTGTTTAGCAAAATACCATCAAACTTTGTTTGAAAC 281 * *** ** * * * * ***** ** * ** *** * * consensus_10700#0 CTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTC 354 consensus_10700#1 CATTTC----ATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACA 337 * **** *** * *** * *** * * * * ** ** *** consensus_10700#0 GTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTG 414 consensus_10700#1 ACGACGTCTAGTTAAAAAATT--TAGTCACTGAAAGTACAA------------------- 376 ****** * ***** * * * * * ** * consensus_10700#0 ACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAAC 474 consensus_10700#1 ------------------------------------------------------------ consensus_10700#0 ACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTC 534 consensus_10700#1 ------------------------------------------------------------ consensus_10700#0 TTTGACTTCCTTTTTTACAACCATTGTGCGCAGATATACGAACTAATCACGCTTGCGTAC 594 consensus_10700#1 ------------------------------------------------------------ consensus_10700#0 GGACGCGC 602 consensus_10700#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||