|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 602 fasta sequence
[AATTTTTTCTTCACATTATTTGTTTAGCAAAATACCAT-CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC-AATAGCAG-GATCATATTTTAGTCCCAGGTCAATATGTTCTGT-CAG-T-CCAAA-GCCGA-AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA-CCA-TTGTGCGCAGATATACGAACTAATCACGCTTGCGTACGGACGCGC]
[+] EMBL CD074038 [AATTTTTTCTTCACATTATTTGTTTAGCAAAATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATACGAACTAA ]
[-] EMBL CD079780 [ ATTTTTTCTTCACATTATTTGTTTAGCAAAATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAACCCANTTGTGCGC ]
[-] EMBL SM591 [ ATTTTTTCNTTNCATTATTTGTTTANCCAAANACCATCCAAACTTTGTNTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGAATATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTAANGCGCATCCCAGGTCTGCCCCAAATGACGTAGAAGTTCAATCCATTAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA TCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTANTCCNTCACCTTTAGACCCTTTTCCCAAATTTC ]
[-] EMBL CD147612 [ TTTACATTATTTGTTTAGCAAAATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGCTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGGAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGA ]
[+] EMBL BG930864 [ AAAATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGTTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAAAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAA ]
[+] EMBL SMAA25687 [ ATACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGCCCTNTGAACAGCAATTTTCTCGTTACGTCT ]
[-] EMBL CD081964 [ TACCAT CAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATACGAACTAATCACGCTTGCGTACGG ]
[-] EMBL AI976190 [ TCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCACAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACNCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATA ]
[-] EMBL CD157830 [ TTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATACGAACTAATCACGCTCGCGTACGGACGCGC]
[-] EMBL AI975766 [ GGACATGATGAATATTGCCGACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCNCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTCTTTGACTTCCTTTTTTACAA CCA TTGTGCGCAGATATACGAACTAATCACGCTTGCGTACGGAC ]
[-] EMBL BE505101 [ ACGCGGCTTTGACAACGACGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGG ]
[+] EMBL BG932850 [ TGCCCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGA CTG ACAGAACAtat ]
[-] EMBL CD134811 [ CCAAAATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCA ]
[-] EMBL CD199574 [ AATGACGTAGAAGTTCAATCCATAAATTCC AATAGCAG GATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATATAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTG ]
[+] EMBL CD060413 [ ATTCCAAATAGCAGAGATCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTACTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAAAACAAATATCAAGACATAGTTTCTGGATTTTT ]
[+] EMBL CD060407 [ AG G TCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTACTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTT ]
[+] EMBL BG930888 [ tTCATATTTTAGTCCCAGGTCAATATGTTCTGT CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGTTTTTGGA ]
[+] EMBL CD060474 [ TGTTCTGTGCAGCTACCAAAGGCCGACAGTGTCCGGATTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTGACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAACACAAATATCAAGACATAGTTTCTGGATTTTT ]
[-] EMBL CD170986 [ T CAG T CCAAA GCCGA AGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACCCTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTCGTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAA ]
consensusID : consensus_10700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[TGAGCAGTAGCTTAGTTAAGCTAACCGGATGCATATAAATTTTCGAACCTGGGTGTATATACACACTAACTACTAAAACGACTTAATGAACTATATGATCGAGCTATATATCAACGTATTCATCCTAATACTGACTCATCAACAAGGATCCAATAGTCTAGCACTCAGATTATAAGCTTATTTAAAGAAGTGCCATGACATATAAGAACCAGATAATAAACGCCAGAATTTTTTCTTCACATTATTTGTTTAGCAAAATACCATCAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCTAGTTAAAAAATTTAGTCACTGAAAGTACAA]
[-] EMBL CD087323 [TGAGCAGTAGCTTAGTTAAGCTAACCGGATGCATATAAATTTTCGAACCTGGGTGTATATACACACTAACTACTAAAACGACTTAATGAACTATATGATCGAGCTATATATCAACGTATTCATCCTAATACTGACTCATCAACAAGGATCCAATAGTCTAGCACTCAGATTATAAGCTTATTTAAAGAAGTGCCATGACATATAAGAACCAGATAATAAACGCCAGAATTTTTTCTTCACATTATTTGTTTAGCAAAATACCATCAAACTTTGTTTGAAACCATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGACGTCTAGTTAAAAAATTTAGTCACTGAAAGTACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10700#0 -----AATTTTTTCTTCACATTATTTGTTTAGCAAAATACCATCAAACTTTGTTTGAAAC 55
consensus_10700#1 TGAGCAGTAGCTTAGTTAAGCTAACCGGATGCATATAAATTTTCGAACCTGGGTGTATA- 59
* * ** * * ** * * * * * ** *** * * * * *
consensus_10700#0 CATTTCATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACAACGA 115
consensus_10700#1 ---TACACACTAACTACTAAAACGACTTAATGA--ACTATATGATCGAGCTATATATCAA 114
* ** ** * *** * **** * * ** * * * * *
consensus_10700#0 CGTCGGTATCTCACGCGCATCCCAGGTCTGCCCAAAATGACGTAGAAGTTCAATCCATAA 175
consensus_10700#1 CGTATTCATCCTA-----ATACT-GACTCATCAACAAGGATCCAATAGTCTAGCACTCAG 168
*** *** * ** * * * * ** ** * *** * * *
consensus_10700#0 ATTCCAATAGCAGGATCATATTTTAGTCCCAGGTCA-ATATGTTCTGTCAGTCCAAAGCC 234
consensus_10700#1 ATTATAA--GCTTATTTAAAG--AAGTGCCATGACATATAAGAACCAGATAATAAACGCC 224
*** ** ** * * * *** *** * ** *** * * ** ***
consensus_10700#0 GAAGTTTCCGGTTTTACTGAAGCATGATTTAGGAAGCTCGTATTCCTTCACCTTTAGACC 294
consensus_10700#1 AGAATTTT---TTCTTCACATTATTTGTTTAGCAAAATACCATCAAACTTTGTTTGAAAC 281
* *** ** * * * * ***** ** * ** *** * *
consensus_10700#0 CTTTTCCAAAATTTCTTCTGCTTTTGGACCCCGCACAGTACAATGAACAGCAATTTTCTC 354
consensus_10700#1 CATTTC----ATTGCCTCTTCCTTTTGGACATGATGATTATTGCCGACGCGGCTTTGACA 337
* **** *** * *** * *** * * * * ** ** ***
consensus_10700#0 GTTACGTCTGATCGAAAAAGTCCTGATGGTTTTATGTGCTTTGCTGAAAACGGGTTGCTG 414
consensus_10700#1 ACGACGTCTAGTTAAAAAATT--TAGTCACTGAAAGTACAA------------------- 376
****** * ***** * * * * * ** *
consensus_10700#0 ACCAGTCAACTGCTCTAAAACTTTAGCAGCTCGAGTTAACCTGTCACCACTTTCCCCAAC 474
consensus_10700#1 ------------------------------------------------------------
consensus_10700#0 ACAAATATCAAGACATAGTTTCTGGATTTTTATTTCCCGCATTGGGTTGTTCGTTTTCTC 534
consensus_10700#1 ------------------------------------------------------------
consensus_10700#0 TTTGACTTCCTTTTTTACAACCATTGTGCGCAGATATACGAACTAATCACGCTTGCGTAC 594
consensus_10700#1 ------------------------------------------------------------
consensus_10700#0 GGACGCGC 602
consensus_10700#1 --------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||