cluster # 1071

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Schistosoma mansoni
cluster # 1071 cluster # 1071 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1071#0 length = 572 sequences # 1

consensus_1071#1 length = 384 sequences # 1

consensusID : consensus_1071#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [TTTGCTAAACAAGAAGATGCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATTGGTGGTCAAGCAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTTCGACTTCCAATACCATATGAAACAATTAAATCCGGAAATGATTCAATAACAGGTTATTTCTTAGGTAAAGATCCTGTTTATACACCTCAATGGACAAGAATGATGGAACCAGTTATTATAGCTACAGAAGCAGACGAAATTACCCCAGATGATATCATTAATCCACCAGCTGAAGTAACTGTTCCATTTATGCAACCATATATAGTTCAAGT]

[+] EMBL CD188725             [TTTGCTAAACAAGAAGATGCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATTGGTGGTCAAGCAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTTCGACTTCCAATACCATATGAAACAATTAAATCCGGAAATGATTCAATAACAGGTTATTTCTTAGGTAAAGATCCTGTTTATACACCTCAATGGACAAGAATGATGGAACCAGTTATTATAGCTACAGAAGCAGACGAAATTACCCCAGATGATATCATTAATCCACCAGCTGAAGTAACTGTTCCATTTATGCAACCATATATAGTTCAAGT]




>consensus_1071#0
TTTGCTAAACAAGAAGATGCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAA
GTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTA
CCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCA
CCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATT
GGTGGTCAAGCAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAAT
GGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTT
CGACTTCCAATACCATATGAAACAATTAAATCCGGAAATGATTCAATAACAGGTTATTTC
TTAGGTAAAGATCCTGTTTATACACCTCAATGGACAAGAATGATGGAACCAGTTATTATA
GCTACAGAAGCAGACGAAATTACCCCAGATGATATCATTAATCCACCAGCTGAAGTAACT
GTTCCATTTATGCAACCATATATAGTTCAAGT

consensusID : consensus_1071#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [TATTTCATAAACTGTTAAACCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATTGGTGGTCAAGTAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTTCGACTTCCAATACCATATGAAAC]

[+] EMBL CD187665             [TATTTCATAAACTGTTAAACCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGAAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGTACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCCACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAATTGGTGGTCAAGTAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGTTCGACTTCCAATACCATATGAAAC]




>consensus_1071#1
TATTTCATAAACTGTTAAACCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTGA
AGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATGT
ACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATCC
ACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAAT
TGGTGGTCAAGTAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTAA
TGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTGT
TCGACTTCCAATACCATATGAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1071#0      --TTTGCTAAACAAGAAGATGCTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTG 58
consensus_1071#1      TATTTCATAAACTGTTAAAC-CTGGTGAATATACATGTATTGCTAAAGGAATTGGATCTG 59
                        ***  *****    * *  ***************************************

consensus_1071#0      AAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATG 118
consensus_1071#1      AAGTGAATGAAACATTTTATGTTGTAGTTATTGATCCTAATGCTGTATCATTACCTGATG 119
                      ************************************************************

consensus_1071#0      TACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATC 178
consensus_1071#1      TACCTGAAGATGATGAAATCAATCGAAAATTCCCATTACCTATACCACCAATACATGATC 179
                      ************************************************************

consensus_1071#0      CACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAA 238
consensus_1071#1      CACCAAGTTTAACAGTTTATGAAATAAAAAAAGATCCAGATAATTCTCAAATAACATTAA 239
                      ************************************************************

consensus_1071#0      TTGGTGGTCAAGCAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTA 298
consensus_1071#1      TTGGTGGTCAAGTAAAACCTGAAATCTTAGATACTCATCATACAATTTGGTATTCTATTA 299
                      ************ ***********************************************

consensus_1071#0      ATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTG 358
consensus_1071#1      ATGGAACTCCTATTGATGCAAAAACTGAAATTACAGATACTGCTCGTGGAGCATTTATTG 359
                      ************************************************************

consensus_1071#0      TTCGACTTCCAATACCATATGAAACAATTAAATCCGGAAATGATTCAATAACAGGTTATT 418
consensus_1071#1      TTCGACTTCCAATACCATATGAAAC----------------------------------- 384
                      *************************                                   

consensus_1071#0      TCTTAGGTAAAGATCCTGTTTATACACCTCAATGGACAAGAATGATGGAACCAGTTATTA 478
consensus_1071#1      ------------------------------------------------------------
                                                                                  

consensus_1071#0      TAGCTACAGAAGCAGACGAAATTACCCCAGATGATATCATTAATCCACCAGCTGAAGTAA 538
consensus_1071#1      ------------------------------------------------------------
                                                                                  

consensus_1071#0      CTGTTCCATTTATGCAACCATATATAGTTCAAGT 572
consensus_1071#1      ----------------------------------