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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 613 fasta sequence
[TCGGGGATTCGATGGCCGACCCTGAGTTGTACAAATGCTTATTTGTGGATATCTTATTCCCCCATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGTACGGCCATTTGTA-AC-TTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATCC-CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCCCCGACAATCAGCGT-ACCACCGCAAACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTCCGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTGCTGTTCAGTTCTTCCTGTCAATATTTTTAGTCCGCAGAGGTAAACCAATCACACCCCCTTCATATGTGGCGACCGTGGCTATAGCCA]
[+] EMBL CD180212 [TCGGGGATTCGATGGCCGACCCTGAGTTGTACAAATGCTTATTTGTGGATATCTTATTCCCCCATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGTACGGCCATTTGTA AC TTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATCC CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCCCCGACAATCAGCGT ACCACCGCAAACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTCCGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTGCTGTTCAGTTCTTCCTGTCAATATTTTTAGTCCGCAGAGGTAAACCAATCACACCCCCTTCATATGTGGCGACCGT ]
[+] EMBL CD180257 [ TTATTTGTGGATATCTTATTCCCCCATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGTACGGCCATTTGTA AC TTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATCC CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTTATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCCCCGACAATCAGCGT ACCACCGCAAACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTCCGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTGCTGTTCAGTTCTTCCTGTCAATATTTTTAGTCCGCAGAGGTAAACCAATCACACCCNCTTCATATGTGGCGACCGTGGCTATAGCCA]
[-] EMBL CD180174 [ TATCTGTGGATATCTTATTCCCCCATTGCTAACTCCTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTTTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGTACGGCCATTTGTA AC TTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATCCGCCTGGACGTCTCATTTTGATAGTCTTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTATGCTT ]
[-] EMBL CD198765 [ cTGGCCTCNCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGTACGGCCATTTGTA AC TTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATCC CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCCCCGACAATCAGCGT ACCACCGCAAACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTCCGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTG ]
[-] EMBL CD198824 [ ACGTTTCATGTTCTTATGTACGGCCATTTGTA AC TTATTGTGTGGGTGCATGCGCGTTNTCAGTAGCGCACCATATATAAATATTTCATCC CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTAATCGCTTCTTTTGCCCCACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCCCCGACAATCAGCGT ACCACCGCAAACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTCCGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTG ]
[-] EMBL CD198730 [ CGTTTCATTGTCTTATGTACGCCCATTTGTA AC TTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATCC CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCTCTGACAATCAGCGTCACCGCCGCATACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAA ]
[-] EMBL CD198746 [ TTTCATTGTCTTATGTACGGCCA TTGTANNC TTATTGTGTGGGTGCATGCGCGTTNTCAGTAGCGCACCATATATAAATATTTCATCC CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCCCCGACAATCAGCGT ACCACCGCAAACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTCCGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTG ]
[-] EMBL CD198812 [ atTTGTCTTATGTACGGCCATTTGTA AC TTATTGTGTGGGTGCATGCGCGTTNTCAGTAGCGCACCATATATAAATATTTCATCC CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCCCCGACAATCAGCGT ACCACCGCAAACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTCCGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTG ]
[-] EMBL CD070169 [ CTTATGTACGGCCA TTGTA ACTTTATTGTGTGGGTGCATGCGCGTTNTCAGTAGCGCACCATATATAAATATTTCATCC CCTGGACGTCTCATTTTGATAGTATTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCTTGCGTGCGATTGGTTCCCCGACAATCAGCGT ACCACCGCAAACACTATTGCATCGCTTGGAAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTCCGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTG ]
consensusID : consensus_10711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 347 fasta sequence
[CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT-TATTCCCCC-ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGT-ACGGCCATTTGTAACTTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATCCCCTGGACGTC]
[+] EMBL CD198769 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGT ACGGCCATTTGTAACTTATTGTGTGNGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATCCCCTGGACGTC]
[+] EMBL CD070128 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTGTGT ACGGCCATTTGTAACTTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATTTCATC ]
[+] EMBL CD198705 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGT ACGGCCATTTGTAACTTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATANTAATATTTC ]
[+] EMBL CD198805 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGT ACGGCCATTTGTAACTTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATATT ]
[+] EMBL CD198728 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCATATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGT ACGGCCATTTGTAACTTATTGTG GGGTGCGTGCGCGTTTTCAGTAACGCACCATATATAAATATT ]
[+] EMBL CD070068 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTCTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGCTTCATTGTCTTATGT ACGGCCATTTGTAACTTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAAATA ]
[+] EMBL CD198721 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGT ACGGCCATTTGTAACTTATTGTGTGGGTGCATGCGCGTTTTCAGTAGCGCACCATATATAA ]
[+] EMBL CD070091 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTACGTTTCATTGTCTTATGTNAC GCCATTTGTAACTTATTGCGTGNGTGCATGCGCGTTTTCA ]
[+] EMBL CD070093 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGNAGTACGTTTCATTGTCTTATGTNAC GCCATTTGTAACTTATTGCGTGNGTGCATGCGCG ]
[+] EMBL CD198788 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCT TATTCCCCC ATTGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCTAATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCTTGGAGTAC ]
[+] EMBL CD198718 [CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGTCTTTACATTTGCCTCACTGAGTTGCACAAATGCTTATTTGTGGATATCTATATTCCCCCGATTGCTAACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10711#0 -----------------------------------------------------TCGGGGA 7
consensus_10711#1 CGTCCTTGATAATTTGAAAGAAACTGATTTTCGCGTGTATCGAACAAGATGGATTATTGT 60
* *
consensus_10711#0 TTCGATGGCCGACCC--TGAGTTGTACAAATGCTTATTTGTGGATATCTTATTCCCCCAT 65
consensus_10711#1 CTTTACATTTGCCTCACTGAGTTGTACAAATGCTTATTTGTGGATATCTTATTCCCCCAT 120
* * * * * *******************************************
consensus_10711#0 TGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCT 125
consensus_10711#1 TGCTAACTACTTTGTGGAGTTTTACTCAACAAGTAACATGGTTCTCAATCTCATTTCTCT 180
************************************************************
consensus_10711#0 AATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCT 185
consensus_10711#1 AATTTACCCTTTGACTACGATAGTGCTTGGCCTCCCAATAGCTTATGTCATAGATTATCT 240
************************************************************
consensus_10711#0 TGGAGTACGTTTCATTGTCTTATGTACGGCCATTTGTAACTTATTGTGTGGGTGCATGCG 245
consensus_10711#1 TGGAGTACGTTTCATTGTCTTATGTACGGCCATTTGTAACTTATTGTGTGGGTGCATGCG 300
************************************************************
consensus_10711#0 CGTTTTCAGTAGCGCACCATATATAAATATTTCATCCCCTGGACGTCTCATTTTGATAGT 305
consensus_10711#1 CGTTTTCAGTAGCGCACCATATATAAATATTTCATCCCCTGGACGTC------------- 347
***********************************************
consensus_10711#0 ATTCGGGCAGGTAATCGCTTCTTTTGCCCAACCATTCTGCTTGTTCTCCACAACCAGTCT 365
consensus_10711#1 ------------------------------------------------------------
consensus_10711#0 TGCGTGCGATTGGTTCCCCGACAATCAGCGTACCACCGCAAACACTATTGCATCGCTTGG 425
consensus_10711#1 ------------------------------------------------------------
consensus_10711#0 AAATTCAGTAGGCATATTGCTCGGCAATGCATTTGCCCCTAATTATGTCAAGAGTTCTTC 485
consensus_10711#1 ------------------------------------------------------------
consensus_10711#0 CGATATTGTTAGTTTCAATTACATATCCTTGGGATTGGTTGCTGTTCAGTTCTTCCTGTC 545
consensus_10711#1 ------------------------------------------------------------
consensus_10711#0 AATATTTTTAGTCCGCAGAGGTAAACCAATCACACCCCCTTCATATGTGGCGACCGTGGC 605
consensus_10711#1 ------------------------------------------------------------
consensus_10711#0 TATAGCCA 613
consensus_10711#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||