cluster # 10715

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Schistosoma mansoni
cluster # 10715 cluster # 10715 Sequences # 20 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10715#0 length = 1486 sequences # 15

consensus_10715#1 length = 871 sequences # 3
consensus_10715#2 length = 610 sequences # 2

consensusID : consensus_10715#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1486
fasta sequence

                              [CTCGAGGCCAAGATTCGGCACGAGGTGGCTGAGTCGGATAAGTTAAACATCGACAGTTTGATATCGAGGCTTTTAGAAGTCCGTGGGTCTCGTCCAGGAAAGAATGTGCAACTATCTGAAGCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTGCTGGAACTCGAGGCACCATTAAAGATTTGTGGCG-ATATTCACGGGCAGTATTATGACCTCCTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGACTACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATAAAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGATATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTGCTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGGTCTCTCAATTCCGGATGGCCTGTTACTCCTCCGAGGAACTCTAAACTCGAAGATAAATGAATTTCCACCATATCATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATATATGTTATTTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTATAATTTAATGTTTTAAGTTTCATGCTTCTCTGTACTTGCAAATTTTAACGCACAAAATATTTCCGTTTTGCCTCCATTTGTTTTGTCCAACATAAAATAATGTACAGACATCTCTGCCCTATTATTAACTCATGCTTATCATTGTACGATAATCTCCATATGTTGTATTTG-AAATGTAGGCACCGTATTTTCATTGTACTTACCTCATTTTGTCATCGATTAGCTTTTCATCGTTATACACATCACAAACGTTTTCCTATTAGTTCTATTAAGATGTCTGTATAAATACAAGTCGTG]

[+] EMBL CD080318             [CTCGAGGCCAAGATTCGGCACGAGGTGGCTGAGTCGGATAAGTTAAACATCGACAGTTTGATATCGAGGCTTTTAGAAGTCCGTGGGTCTCGTCCAGGAAAGAATGTGCAACTATCTGAAGCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTGCTGGAACTCGAGGCACCATTAAAGATTTGTGGCG ATATTCACGGGCAGTATTATGACCTCCTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGACTACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATTAAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGGTTACTGTGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD202079             [                                                                                                       ATGTGCAACTATCTGAAGCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTGCTGGAACTCGAGGCACCATTAAAGATTTGTGGCG ATATTCACGGGCAGTATTATGACCTCCTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGACTACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATAAAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD202010             [                                                                                                       ATGTGCAACTATCTGAAGCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTGCTGGAACTCGAGGCACCATTAAAGATTTGTGGCGTATATTCACGGGCAGTATTATGACCTCCTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGACTACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATAAAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD063490             [                                                                                                                                                                                                                                                                        CTACCCACCAGATGCGAATTATTTGCTCTTGGGTGACTACGTTGATCGGGGCAAACAGTCCCTCTAAACTATTTGTCTTTTACTGGCCTATAAAATAAAATATCCTGAAAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD167289             [                                                                                                                                                                                                                                                                                                                                                                                                                 AGTGCGCATCAATCAACCGCATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGATATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTGCTCCATACTATTGTGGAGAATACGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAA   CCGCAGATAAGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AI976796             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCCATGGTGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGATATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTGCTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGGTCTCTCAATTCCGGATGGCCTGTTACTCCTCCGAGGAACTCTAAACTCGAAGATAAATGAATTTCCACCATATCATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGAATCCAACCAGTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD112343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGAATATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTGCTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAAAACCCGCAGATCAGAAAAAGTTCAACTTCCGGTCTCTCAATTCCGGATGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD114229             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTGCTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGGTCTCTCAATTCCGGATGGCCTGTTACTCCCCCGAGGAACTCTAAACTCGAAGATAAATGAATTTCCACCATATCATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATATATGTTATTTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTATAATTTAATTNTTTAAGTTTCATGCTTCTCTGTACTTGCANATTTTAACGCACAAAATATTTCCGTTCTGCCTCCATTTGTTTTGTCCAACATAAAATAATGTACAGACATCTCTGCCCTATTATTAACTCATGCTTATCATTGTACGATAATCTCCATATGTNGTATTTG AAATGTAGGCACCGTATTT                                                                                                           ]
[-] EMBL BG932615             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGGTCTCTCAATTCCGGATGGCCTGTTACTCCTCCGAGGAACTCTAAACTCGAAGATAAATGAATTTCCACCATATCATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATATATGTTATTTATGTCCTTTATTTACTCCACTa                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD200901             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATTCCGGATGGCCTGTTACTCCTCCGAGGAACTCTAAACTCGAAGATAAATGAATTTCCCCCATATCATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATATATGTTATTTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTATAATTTAATGTTTTAAGTTTCAAGCTTCTCTGTACTTGCAAATTTTAACGCACAAAATATTTCCGTTTTGCCTCCATTTGTTTTGTCCGACATAAAATAATG                                                                                                                                                                                                    ]
[-] EMBL CD076422             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AACTCTAAACTCGAAGATAAATGAATTTCCACCATATCATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATATATGTTATTTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTATAATTTAATGTTTTAAGTTTCATGCTTCTCTGTACTTGCAAATTTTAACGCACAAAATATTTCCGTTTTGCCTCCATTTGTTTTGTCCAACATAAAATAATGTACAGACATCTCTGCCCTATTATTAACTCATGCTTATCATTGTACGATAATCTCCATATGTTGTATTTGAAAATGTAGGCACCGTATTTTCATTGTACTTACCTCATTTTGTCATCGATTAGCTTTTCATCGTTATACACATCACAAACGTTTTCCTATTAGTTCTATTAAGATGTCTGTATAAATACAAGTCGTG]
[+] EMBL CD125366             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATATATGTTATTTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTATAATTTAATGTTTTAAGTTTCATGCTTCTCTGTACTTGCAAATTTTAACGCACAAAATATT                                                                                                                                                                                                                                             ]
[+] EMBL CD125371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATGTATGTTATTTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTATAATTTAATGTTTTAAGTTTCATGCTTCTCTGTACTTGCAAATTTTAACGCACAAAATATT                                                                                                                                                                                                                                             ]
[-] EMBL CD125406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATATATGTTATTTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTATAATTTAATGTTTTAAGTTTCATGCTTCTCTGTACTTGCAAATTTTAACGCACAAAATATTT                                                                                                                                                                                                                                            ]
[-] EMBL AA999227             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGCACTTGCAAATTTTAACGCACAAAATATTTCCGTTTTGCCCCCATTTGTTTTGTCCAACATAAAATAATGTACAGACATCTNTGCCCTATTATTAACTCATGCTTATCATTGTACGATAATCTCCATATGTTGTATTTGAAAATGTAGGCACCGTATTTTCATTGTACTTACCTCATTTTGTCATCGATTAGCTTTTCATCGTTATACACATCACAAACGTTTTCCTATTAGTTCTATTAAGATGTCTGTATAAATACAAGTTGTG]




>consensus_10715#0
CTCGAGGCCAAGATTCGGCACGAGGTGGCTGAGTCGGATAAGTTAAACATCGACAGTTTG
ATATCGAGGCTTTTAGAAGTCCGTGGGTCTCGTCCAGGAAAGAATGTGCAACTATCTGAA
GCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTG
CTGGAACTCGAGGCACCATTAAAGATTTGTGGCGATATTCACGGGCAGTATTATGACCTC
CTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGAC
TACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATA
AAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGC
ATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTC
ACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGC
CATGGTGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCA
ACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGAT
ATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTC
ACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTCGTGGAA
GATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTGCTCCAAACTAT
TGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCC
TTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGGTCTCTCAATTCCGGA
TGGCCTGTTACTCCTCCGAGGAACTCTAAACTCGAAGATAAATGAATTTCCACCATATCA
TTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAATTTGGTAATGA
TTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGAATATATGTTAT
TTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTATAATTTAATGT
TTTAAGTTTCATGCTTCTCTGTACTTGCAAATTTTAACGCACAAAATATTTCCGTTTTGC
CTCCATTTGTTTTGTCCAACATAAAATAATGTACAGACATCTCTGCCCTATTATTAACTC
ATGCTTATCATTGTACGATAATCTCCATATGTTGTATTTGAAATGTAGGCACCGTATTTT
CATTGTACTTACCTCATTTTGTCATCGATTAGCTTTTCATCGTTATACACATCACAAACG
TTTTCCTATTAGTTCTATTAAGATGTCTGTATAAATACAAGTCGTG

consensusID : consensus_10715#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 871
fasta sequence

                              [GGTCATTTATGCTGGTGATTTATGGCTGAGTCGGATAAGTTAAACATCGACAGTTTGATATCGAGGCTTTTAGAAGTCCGTGGGTCTCGTCCAGGAAAGAATGTGCAACTATCTGAAGCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTGCTGGAACTCGAGGCACCATTAAAGATTTGTGGCGATATTCACGGGCAGTATTATGACCTCCTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGACTACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATTAAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATACAGTTGTGGAAGACGTTCACTGATTGTTTC-ACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGTAGGTCACAACCTATACTTGTAAGTACACAGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGATATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCANACGCCAGCTCGTAACTCTATTNTCTGCTCCAAACTATTGT]

[+] EMBL CD083779             [GGTCATTTATGCTGGTGATTTATGGCTGAGTCGGATAAGTTAAACATCGACAGTTTGATATCGAGGCTTTTAGAAGTCCGTGGGTCTCGTCCAGGAAAGAATGTGCAACTATCTGAAGCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTGCTGGAACTCGAGGCACCATTAAAGATTTGTGGCGATATTCACGGGCAGTATTATGACCTCCTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGACTACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATTAAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATACAGTTGTGGAAGACGTTCACTGATTGTTTC ACTGCTTACCAATAGTCGCTATAGTGGAT                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD061933             [                                                                                                                                 GGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCACTCTGCTGGAACTCGAGGCACCGTTAAAGATTTGTGGCGATATTCACGGGCAGTATTATGACCTCCTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGACTACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATTAAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCA C ATCACCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD095610             [                                                                                                                                                                                                                                                                                                                                CCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATTAAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGTAGGTCACAACCTATACTTGTAAGTACACAGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGATATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCANACGCCAGCTCGTAACTCTATTNTCTGCTCCAAACTATTGT]




>consensus_10715#1
GGTCATTTATGCTGGTGATTTATGGCTGAGTCGGATAAGTTAAACATCGACAGTTTGATA
TCGAGGCTTTTAGAAGTCCGTGGGTCTCGTCCAGGAAAGAATGTGCAACTATCTGAAGCA
GAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTGCTG
GAACTCGAGGCACCATTAAAGATTTGTGGCGATATTCACGGGCAGTATTATGACCTCCTC
CGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGACTAC
GTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATTAAA
TATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATA
TACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATACAGTTGTGGAAGACGTTCACT
GATTGTTTCACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATG
GTGGTAGGTCACAACCTATACTTGTAAGTACACAGGCCTCTCCCCTGACCTCCACTCTAT
GGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGA
CCTGCTTTGGTCCGATCCGGATAAGGATATTACTGGATGGGGGGAAAATGACCGTGGTGT
GAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCT
CATCTGCAGAGCACATCAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCANACGCCAGCT
CGTAACTCTATTNTCTGCTCCAAACTATTGT

consensusID : consensus_10715#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 610
fasta sequence

                              [CTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCA-TATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGTTATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTAGGGTTAAACCCCATAATAACTACTTAAATTTGCTAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTGCTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGG]

[+] EMBL CD082833             [CTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCA TATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGTTATTACTGGATGGGGGGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTAGGGTTAAACCCCATAATAACTACTTAAATTTGCTAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTGCTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGG]
[+] EMBL CD167373             [                               GCATCACTCAACCGCACTATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGCCTCTCCCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTT                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_10715#2
CTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGCATATACGGCTTTTA
CGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTCACTGATTGTTTCAA
CTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGCCATGGTGGCCTCTC
CCCTGACCTCCACTCTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGA
ACAAGGTTTACTGTGTGACCTGCTTTGGTCCGATCCGGATAAGGTTATTACTGGATGGGG
GGAAAATGACCGTGGTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCA
CAGTCACGAATTGGACCTCATCTGCAGAGCACATCAGGTAGGGTTAAACCCCATAATAAC
TACTTAAATTTGCTAGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGT
AACTCTATTTTCTGCTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTC
TGTTGACGAAACCCTCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTT
CAACTTCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10715#0      CTCGAGGCCAAGATTCGGCACGAGGTGGCTGAGTCGGATAAGTTAAACATCGACAGTTTG 60
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ---GGTCATTTATGCTGGTGATTTATGGCTGAGTCGGATAAGTTAAACATCGACAGTTTG 57
                                                                                   

consensus_10715#0      ATATCGAGGCTTTTAGAAGTCCGTGGGTCTCGTCCAGGAAAGAATGTGCAACTATCTGAA 120
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ATATCGAGGCTTTTAGAAGTCCGTGGGTCTCGTCCAGGAAAGAATGTGCAACTATCTGAA 117
                                                                                   

consensus_10715#0      GCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTG 180
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      GCAGAAATAAGGGGCCTAGCTCTGAAGTCAAGGGAAATTTTCCTTCGACAGCCCATTCTG 177
                                                                                   

consensus_10715#0      CTGGAACTCGAGGCACCATTAAAGATTTGTGGCGATATTCACGGGCAGTATTATGACCTC 240
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      CTGGAACTCGAGGCACCATTAAAGATTTGTGGCGATATTCACGGGCAGTATTATGACCTC 237
                                                                                   

consensus_10715#0      CTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGAC 300
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      CTCCGTTTGTTCGAGTATGGAGGCTTCCCACCAGATGCGAATTATTTGTTCTTGGGTGAC 297
                                                                                   

consensus_10715#0      TACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATA 360
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      TACGTTGATCGTGGCAAACAGTCCCTCGAAACTATTTGTCTTTTACTGGCCTATAAAATT 357
                                                                                   

consensus_10715#0      AAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGC 420
consensus_10715#2      --------------CTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGC 46
consensus_10715#1      AAATATCCTGAAAACTTTTTCCTTCTTCGTGGAAATCATGAGTGCGCATCAATCAACCGC 417
                                     **********************************************

consensus_10715#0      ATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTC 480
consensus_10715#2      ATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATAAAGTTGTGGAAGACGTTC 106
consensus_10715#1      ATATACGGCTTTTACGATGAATGTAAGCGGAGGTACAACATACAGTTGTGGAAGACGTTC 477
                       ****************************************** *****************

consensus_10715#0      ACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGC 540
consensus_10715#2      ACTGATTGTTTCAACTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGC 166
consensus_10715#1      ACTGATTGTTTCA-CTGCTTACCAATAGTCGCTATAGTGGATGAAAAAATCTTCTGCTGC 536
                       ************* **********************************************

consensus_10715#0      CATGGTGG--------------------------------CCTCTCCCCTGACCTCCACT 568
consensus_10715#2      CATGGTGG--------------------------------CCTCTCCCCTGACCTCCACT 194
consensus_10715#1      CATGGTGGTAGGTCACAACCTATACTTGTAAGTACACAGGCCTCTCCCCTGACCTCCACT 596
                       ********                                ********************

consensus_10715#0      CTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGT 628
consensus_10715#2      CTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGT 254
consensus_10715#1      CTATGGAGCAAATCCGTAGGATTATGCGCCCAACCGATGTCCCGGAACAAGGTTTACTGT 656
                       ************************************************************

consensus_10715#0      GTGACCTGCTTTGGTCCGATCCGGATAAGGATATTACTGGATGGGGGGAAAATGACCGTG 688
consensus_10715#2      GTGACCTGCTTTGGTCCGATCCGGATAAGGTTATTACTGGATGGGGGGAAAATGACCGTG 314
consensus_10715#1      GTGACCTGCTTTGGTCCGATCCGGATAAGGATATTACTGGATGGGGGGAAAATGACCGTG 716
                       ****************************** *****************************

consensus_10715#0      GTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGG 748
consensus_10715#2      GTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGG 374
consensus_10715#1      GTGTGAGTTATACGTTTGGTGCAGATATTGTCACCAAGTTCCTTCACAGTCACGAATTGG 776
                       ************************************************************

consensus_10715#0      ACCTCATCTGCAGAGCACATCAGGT----------------------------------- 773
consensus_10715#2      ACCTCATCTGCAGAGCACATCAGGTAGGGTTAAACCCCATAATAACTACTTAAATTTGCT 434
consensus_10715#1      ACCTCATCTGCAGAGCACATCAGGT----------------------------------- 801
                       *************************                                   

consensus_10715#0      ----CGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTG 829
consensus_10715#2      AGGTCGTGGAAGATGGTTACGAGTTTTTCGCCAAACGCCAGCTCGTAACTCTATTTTCTG 494
consensus_10715#1      ----CGTGGAAGATGGTTACGAGTTTTTCGCCANACGCCAGCTCGTAACTCTATTNTCTG 857
                           ***************************** ********************* ****

consensus_10715#0      CTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCC 889
consensus_10715#2      CTCCAAACTATTGTGGAGAATTCGATAACGCTGGCGCTATGATGTCTGTTGACGAAACCC 554
consensus_10715#1      CTCCAAACTATTGT---------------------------------------------- 871
                       **************                                              

consensus_10715#0      TCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGGTCTC 949
consensus_10715#2      TCACTTGTTCCTTTCAGATATTAAAACCCGCAGATAAGAAAAAGTTCAACTTCCGG---- 610
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      TCAATTCCGGATGGCCTGTTACTCCTCCGAGGAACTCTAAACTCGAAGATAAATGAATTT 1009
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      CCACCATATCATTGTGAGTTACCAGTTTCCACGGTCCGTGGAAATGATACGAACCAGTAA 1069
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      TTTGGTAATGATTTTTAAAATGTACAGTCCTCAGACGTTAACTATTCAGCAACCTGATGA 1129
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      ATATATGTTATTTATGTCCTTTATTTACTCCACTCCTGCTACATTATGGTTAAGATCTTA 1189
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      TAATTTAATGTTTTAAGTTTCATGCTTCTCTGTACTTGCAAATTTTAACGCACAAAATAT 1249
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      TTCCGTTTTGCCTCCATTTGTTTTGTCCAACATAAAATAATGTACAGACATCTCTGCCCT 1309
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      ATTATTAACTCATGCTTATCATTGTACGATAATCTCCATATGTTGTATTTGAAATGTAGG 1369
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      CACCGTATTTTCATTGTACTTACCTCATTTTGTCATCGATTAGCTTTTCATCGTTATACA 1429
consensus_10715#2      ------------------------------------------------------------
consensus_10715#1      ------------------------------------------------------------
                                                                                   

consensus_10715#0      CATCACAAACGTTTTCCTATTAGTTCTATTAAGATGTCTGTATAAATACAAGTCGTG 1486
consensus_10715#2      ---------------------------------------------------------
consensus_10715#1      ---------------------------------------------------------