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Schistosoma mansoni
cluster # 10734 cluster # 10734       Sequences # 20       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10734#0 length = 1240 sequences # 19  
consensus_10734#1 length = 397 sequences # 1  

consensusID : consensus_10734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 19
consensus length = 1240
fasta sequence
                              [GACGTGCCCGACAAATGGTCAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAAAGGAAAAAG-TCAGGCTGGTGATGTTATTACTATTGATAAACCCTCTGGAAAAA-TACAAGACTAGGTCGATCGTTCACTAGGGCTCGAGACTACGATGCTACCGGTGGTCAAACCAAGTTTATTCAGTGTCCCGAAGGTGAATTGCAAAAACGAAAAGAAGTCGTTCACACTGTTACATTACATGAAATCGACGTAATTAACAGCAGAACTCAAGGTTTCCTTGCCCTTTTTAGTGGAGACACAGGTGAAATAAAGTCGGAGGTGAGGGATCAAATTAACCACAAAGTAGCTGAATGGCGGGAAGAAGGCAAGGCAGAAATAGTTCCTGGTGTCCTGTTTATTGACGAAGTGCACATGTTGGATATTGAATGCTTCTCATTTCTTAATCGAGCCCTTGAATCTGATATGGCTCCTGTGTTAATTGTGGCCACAAACAGAGGTATCACAAGAATTCGTGGTACTAATTATCAGAGTCCACACGGAATACCTATTGATCTTCTTGATCGTCTCCTCATCATTTCAACTGATTCGTATACAGACAAAGAAATCCAAGCAATTTTGAAAATTCGTTGCGAAGAAGAGGATGTTGATATTTCGGAAGACGCACTGGTCGTTCTTACCCGAATTGGTATGCAGACGTCCTTACGTTATGCAATCCAACTGATAACCACTGCAA]

[+] EMBL CD123885             [GACGTACCCGACAAATGGTCAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD134432             [acacatcaCGACAAATGGTCAACCTAACTGCAACAGTTCAAGGGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAAAGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACANAGGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD162779             [     gacatACAAATGGTCAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTAGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAAAGGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD162829             [     gacatACAAATGGTCAACCTAACTGCAACGGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCTATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGGAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAAAGGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD134470             [                  TCAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATGGCGGGGgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD133228             [                  TCAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGGAACAGTTTACGATCTAGGTC AAAAATGATAGATTCCCTAACANAGGGAAAAG TCAGGCTGGTGATGTTATTACTATTGATAAACCCTCTGGAAAAA TACAAGACTAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD180657             [                   CAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGNTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAAAGGAAAAAG T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD132135             [                   CAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD113611             [                    AACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAACCTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCGTGACACACCATTCTCTGCAATGGCTGGTAGTGAAATATTCTCATTACAAATGAGCAAGCCAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCGTAATAGATCGCCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD113529             [                    AACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCGTGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD113577             [                    AACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAATTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATGATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAGCTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCGTGACACTCCATTCTCTGCAATGGCTGGTAGTGAAATATTCTCATTACAAATGAGCAAGACACAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGTAGAAGTTGTGCAAGTCGTAATAGATCGCCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD170303             [                                                                                                                                                                                               CTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCAGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD187932             [                                                                                                                                                                                                                                                                       ACTGCAATTGCTATGGGTATGGCTCAGGCGCTTGGTCATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATCGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAAAGGAAAAAGTTCAGGCTGGTGATGTTATTACTATTGATAAACCCTCTGGAAAAATTACAAGACTAGGTCGATCGTTCACTAGGGCTCGAGACTACGATGCTACCGGTGGTCAAACCAAGTTTATTCAGTGTCCCGAAGGTGAATTGCAAAAACGAAAAGAAGTCGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD132468             [                                                                                                                                                                                                                                                                                                                                                                                                      CAATTGGCGTGCGAATCAAAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAAAGGAAAAAGTTCAGGCTGGTGATGTTATTACTATTGATAAACCCTCTGGAAAAA Tt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD130491             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TACTATTGATAAACCCTCTGGAAAAATTACAAGACTAGGTCGATCGTTCACTAGGGCTCGAGACTACGATGCTACCGGTGGTCAAACCAAGTTTATTCAGTGTCCCGAAGGTGAATTGCAAAAACGAAAAGAAGTCGTTCACACTGTTACATTACATGAAATCGACGTAATTAACAGCAGAACTCAAGGTTTCCTTGCCCTTTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BG931944             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTCAAACCAAGTTTATTCAGTGTCCCGAAGGTGAATTGCAAAAACGAAAAGAAGTCGTTCACACTGTTACATTACATGAAATCGACGTAATTAACAGCAGAACTCAAGGTTTCCTTGCCCTTTTTAGTGGAGACACAGGTGAAATAAAGTCGGAGGTGAGGGATCAAATTAACCACAAAGTAGCTGAATGGCGGGAAGAAGGCAAGGCAGAAATAGTTCCTGGTGTCCTGTTTATTGACGAAGTGCACATGTTGGATATTGAATGCTTCTCATTTCTTAATCGAGCCCTTGAATCTGATATGGCTCCTGTGTTAATTGTGGCCACAAACAGAGGTAT                                                                                                                                                                                                                                         ]
[-] EMBL CD138143             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTATTCAGTGTCCCGAAGGTGAATTGCAAAAACGAAAAGAAGTCGTTCACACTGTTACATTACATGAAATCGACGTAATTAACAGCAGAACTCAAGGTTTCCTTGCCCTTTTTAGTGGAGGCACAGGTGAAATAAAGTCGGAGGTGAGGGATCAAATTAACCACAAAGTAGCTGAATGGCGGGAAGAAGGCAAGGCAGAAATAGTTCCTGGTGTCCTGTTTATTGACGAAGTGCACATGTTGGATATTGAATGCTTCTCATTTCTTAATCGAGCCCTTGAATCTGATATGGCTCCTGTGTTAATTGTGGCCACAAACAGAGGTATCACAAGAATTCGTGGTACTAATTATCAGAGTCCACACGGAATACCTATTGATCTTCTTGATCGTCTCCTCATCATTTCAACTGATTCGTATACAGACAAAGAAATCCAAGCAATTTTGAAAATTCGTTGCGAAGAAGAGGATGTTGATATTTCGGAAGACGCACTGGTCGTTCTTACCCGAATTGGTATGCAGACGTCCTTACGTTATGCAATCCAACTGATAACCACTGCAA]
[+] EMBL CD132535             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAATTGCAAAAACGAAAAGAAGTCGTTCACACTGTTACATTACATGAAATCGACGTAATTAACAGCAGAACTCAAGGTTTCCTTGCCCTTTTTAGTGGAGACACGGGTGAAATAAAGTCGGAGGTGAGGGATCAAATTACCCACAAA                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD136469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTACATGAAATCGACGTAATTAACAGCAGAACTCAAGGTTTCCTTGCCCTTTTTAGTGGAGACACAGGTGAAATAAAGTCGGAGGTGAGGGATCAAATTAACCACAAAGTAGCTGAATGGCGGGAAGAAGGCAAGGCAGAAATAGTTCCTGGTGTCCTGTTTATTGACGAAGTGCACATGTTGGATATTGAATGCTTCTCATTTCTTAATCGAGCCCTTGAATCTGATATGGCTCCTGTGTTAATTGTGGCCACAAACAGAGGTATCACAAGAATTCGTGGTACTAATTATCAGAGTCCACACGGAATACCTATTGATCTTCTTGATCGTCTCCTCATCATTT                                                                                                                                                            ]


>consensus_10734#0 GACGTGCCCGACAAATGGTCAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAA TTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATG ATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAG CTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTG CTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTC ATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGA CAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAAGAGGAAGCCG AAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTG CAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTC AAAAAATGATAGATTCCCTAACAAAGGAAAAAGTCAGGCTGGTGATGTTATTACTATTGA TAAACCCTCTGGAAAAATACAAGACTAGGTCGATCGTTCACTAGGGCTCGAGACTACGAT GCTACCGGTGGTCAAACCAAGTTTATTCAGTGTCCCGAAGGTGAATTGCAAAAACGAAAA GAAGTCGTTCACACTGTTACATTACATGAAATCGACGTAATTAACAGCAGAACTCAAGGT TTCCTTGCCCTTTTTAGTGGAGACACAGGTGAAATAAAGTCGGAGGTGAGGGATCAAATT AACCACAAAGTAGCTGAATGGCGGGAAGAAGGCAAGGCAGAAATAGTTCCTGGTGTCCTG TTTATTGACGAAGTGCACATGTTGGATATTGAATGCTTCTCATTTCTTAATCGAGCCCTT GAATCTGATATGGCTCCTGTGTTAATTGTGGCCACAAACAGAGGTATCACAAGAATTCGT GGTACTAATTATCAGAGTCCACACGGAATACCTATTGATCTTCTTGATCGTCTCCTCATC ATTTCAACTGATTCGTATACAGACAAAGAAATCCAAGCAATTTTGAAAATTCGTTGCGAA GAAGAGGATGTTGATATTTCGGAAGACGCACTGGTCGTTCTTACCCGAATTGGTATGCAG ACGTCCTTACGTTATGCAATCCAACTGATAACCACTGCAA



consensusID : consensus_10734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence
                              [TGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACGCCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAGTAAGTCATCTTTTTCTTATTATTTCCTCAGAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAA]

[-] EMBL CD184795             [TGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACGCCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAGTAAGTCATCTTTTTCTTATTATTTCCTCAGAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAA]


>consensus_10734#1 TGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTGCTGGTCCACCTGGCACGG GCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTCATGACACGCCATTCACTG CAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGACAGAAGCTCTTACTCAAG CGTTCAGAAAGTCAATTGGCGTGCGAATCAAGTAAGTCATCTTTTTCTTATTATTTCCTC AGAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTCTTAATAGATCGCCCAGCA ACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACAACCGAAATGGAAACAGTT TACGATCTAGGTCAAAAAATGATAGATTCCCTAACAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10734#0      GACGTGCCCGACAAATGGTCAACCTAACTGCAACAGTTCAAGAGGCGGCAGCTCGAGAAA 60
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      TTACGCGTATTGAACGCATAGGAGCCCATTCACATATTCGTGGTCTGGGATTAAATGATG 120
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      ATCTTGAAGCCCGACAGATCTCTCAGGGTATGGTTGGCCAATGTAAGGCAAGAAGAGCAG 180
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      CTGGCCTTATACTGGGTATGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTG 240
consensus_10734#1      ------------------TGATACGTGAGGGTAAAATTGCTGGGCGTGCCATACTTCTTG 42
                                         ******************************************

consensus_10734#0      CTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTC 300
consensus_10734#1      CTGGTCCACCTGGCACGGGCAAAACTGCAATTGCTATGGGTATGGCTCAGGCACTTGGTC 102
                       ************************************************************

consensus_10734#0      ATGACACACCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGA 360
consensus_10734#1      ATGACACGCCATTCACTGCAATGGCTGGTAGTGAAATATTCTCATTAGAAATGAGCAAGA 162
                       ******* ****************************************************

consensus_10734#0      CAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAA----------- 409
consensus_10734#1      CAGAAGCTCTTACTCAAGCGTTCAGAAAGTCAATTGGCGTGCGAATCAAGTAAGTCATCT 222
                       *************************************************           

consensus_10734#0      --------------------AGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTC 449
consensus_10734#1      TTTTCTTATTATTTCCTCAGAGAGGAAGCCGAAATAATTGAAGGAGAAGTTGTGGAAGTC 282
                                           ****************************************

consensus_10734#0      TTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACA 509
consensus_10734#1      TTAATAGATCGCCCAGCAACTGGAACAGGTGCAAAGATAGGAAAACTAACGCTTAAGACA 342
                       ************************************************************

consensus_10734#0      ACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAAAGGAA 569
consensus_10734#1      ACCGAAATGGAAACAGTTTACGATCTAGGTCAAAAAATGATAGATTCCCTAACAA----- 397
                       *******************************************************     

consensus_10734#0      AAAGTCAGGCTGGTGATGTTATTACTATTGATAAACCCTCTGGAAAAATACAAGACTAGG 629
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      TCGATCGTTCACTAGGGCTCGAGACTACGATGCTACCGGTGGTCAAACCAAGTTTATTCA 689
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      GTGTCCCGAAGGTGAATTGCAAAAACGAAAAGAAGTCGTTCACACTGTTACATTACATGA 749
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      AATCGACGTAATTAACAGCAGAACTCAAGGTTTCCTTGCCCTTTTTAGTGGAGACACAGG 809
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      TGAAATAAAGTCGGAGGTGAGGGATCAAATTAACCACAAAGTAGCTGAATGGCGGGAAGA 869
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      AGGCAAGGCAGAAATAGTTCCTGGTGTCCTGTTTATTGACGAAGTGCACATGTTGGATAT 929
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      TGAATGCTTCTCATTTCTTAATCGAGCCCTTGAATCTGATATGGCTCCTGTGTTAATTGT 989
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      GGCCACAAACAGAGGTATCACAAGAATTCGTGGTACTAATTATCAGAGTCCACACGGAAT 1049
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      ACCTATTGATCTTCTTGATCGTCTCCTCATCATTTCAACTGATTCGTATACAGACAAAGA 1109
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      AATCCAAGCAATTTTGAAAATTCGTTGCGAAGAAGAGGATGTTGATATTTCGGAAGACGC 1169
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      ACTGGTCGTTCTTACCCGAATTGGTATGCAGACGTCCTTACGTTATGCAATCCAACTGAT 1229
consensus_10734#1      ------------------------------------------------------------
                                                                                   

consensus_10734#0      AACCACTGCAA 1240
consensus_10734#1      -----------
                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)