These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1009 fasta sequence [AACAAATTGATTTTATTGTTTTAATTGAATAGGTCATTAAGTTATACCAAAGAGTTATTAAATGGTATAATGTCTTATAGTTAACTCGATGGTCATCATCCTTTTTTGATCATGTATACGATATAATACACCAATGTCACGATACTTGAA-CCTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT-CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGTCGTACCGCATCTCCAGGAATTAGGATGGATGGAAACAGATTCAGAACTTCAGAATCTTTTACTGTACGAGAAAATCCGCTGACACAAGCACATGTCAAAAAGCCACCAGGTGG] [+] EMBL CD074230 [AACAAATTGATTTTATTGTTTTAATTGAATAGGTCATTAAGTTATACCAAAGAGTTATTAAATGGTATAATGTCTTATAGTTAACTCGATGGTCATCATCCTTTTTTGATCATGTATACGATATAATACACCAATGTCACGATACTTGAATCCTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGA ] [+] EMBL BG930447 [ ctccTACAATATAA AATAAT TAATAAT CTT A CCTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAAAATGT ] [-] EMBL CD130822 [ tccaTGGA ACTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTG ] [-] EMBL CD134064 [ CACCAACAAACTGTNCCTGAGGGTCACGGCGCAGTCTTATCGAACNCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTA ] [+] EMBL CD179943 [ ACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTGACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTGTCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGG ] [-] EMBL CD077408 [ AGTCTTATCGACCCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCT ] [+] EMBL CD127257 [ ccaatagtAGGTTGTCTCGGATC TATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGA ] [+] EMBL CD095037 [ GGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCAAAGGTGA ] [-] EMBL CD195282 [ TCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGTCGTACCGCATCTCCAGGAATTAGGATGGATGGAAACAGATTCAGAACTTCAGAATCTTTTACTGTACGAGAAAATCCGCTGACACAAGCACATGTCAAAAAGCCACCAGGTG ] [-] EMBL CD118356 [ AGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGTCGTACCGCATCTCCAGGAATTAGGATGGATGGAAACAGATTCAGAACTTCAGAATCTTTTACTGTACGAGAAAATCCGCTGACACAAGCACATGTCAAAAAGCCACCAGGTGG] [-] EMBL CD138549 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ] [-] EMBL CD164232 [ GGATGCGGGATTCCCGTGGATCTCTGTGGCGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCATACTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCAGTAATGAAATCAATGAAAGCAATAT ] [-] EMBL CD138578 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ] [-] EMBL CD164228 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ] [-] EMBL CD138572 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ] [-] EMBL CD164267 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGag ] [-] EMBL CD164265 [ agaGATGCGGGATTCCCGTGGATATCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ] [-] EMBL CD164230 [ TAGAACCTTCAGTGGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATC ] consensusID : consensus_10739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence [GACGAGTTGATTCAGTCCCAATTGAAACGAAATATAGTGAGGAATCCATGCTGAAAGAACACCGCAAGCCATAAGGTCCCTCGGTCGATGTCCATGGAACTGTTACTTCCGGTAATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCNGACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGNTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGNGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATGGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGT] [+] EMBL CD141092 [GACGAGTTGATTCAGTCCCAATTGAAACGAAATATAGTGAGGAATCCATGCTGAAAGAACACCGCAAGCCATAAGGTCCCTCGGTCGATGTCCATGGAACTGTTACTTCCGGTAATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCNGACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGNTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGN ] [-] EMBL CD170665 [ TAGTGAGGAATCCATGCTGAAAGAACACCGCAAGCCATAAGGTCCCTCGGTCGATGTCCATGGAACTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATGGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10739#0 AACAAATTGATTTTATTGTTTTAATTGAATAGGTCATTAAGTTATACCAAAGAGTT-ATT 59 consensus_10739#1 ------------------------------------------------GACGAGTTGATT 12 * ***** *** consensus_10739#0 AAATGGTATAATGTCTTATAGTTAACTCGATGGTCATCATCCTTTTTTGATCATGTATAC 119 consensus_10739#1 CAGTCCCA-ATTGAAACGAAATATAGTGAGGAATC--CATGCTGAAAGAACACCGCAAGC 69 * * * * ** * * * * ** *** ** * * * * consensus_10739#0 GATATAATACACCAATGTCACGATACTTGAACCTGTTACTTCCGGTGATCGAAATGCAAT 179 consensus_10739#1 CATAAGGTCCCTCG--GTCGATGTCCATGGAACTGTTACTTCCGGTAATCGAAATGCAAT 127 *** * * * *** * * ** * ************** ************* consensus_10739#0 ACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCG 239 consensus_10739#1 ACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCG 187 ************************************************************ consensus_10739#0 TAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGC 299 consensus_10739#1 TAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGC 247 ************************************************************ consensus_10739#0 AGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACA 359 consensus_10739#1 AGTCTTATCNGACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGNTGATCAACA 307 ********* *************************************** ********* consensus_10739#0 GTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGA 419 consensus_10739#1 GTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGNGCGACGA 367 **************************************************** ******* consensus_10739#0 TGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATA 479 consensus_10739#1 TGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATG 427 *********************************************************** consensus_10739#0 GAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAA 539 consensus_10739#1 GAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGT-------------- 473 ********************************************** consensus_10739#0 GGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTT 599 consensus_10739#1 ------------------------------------------------------------ consensus_10739#0 GGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATG 659 consensus_10739#1 ------------------------------------------------------------ consensus_10739#0 CGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCA 719 consensus_10739#1 ------------------------------------------------------------ consensus_10739#0 TCTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGA 779 consensus_10739#1 ------------------------------------------------------------ consensus_10739#0 AGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGA 839 consensus_10739#1 ------------------------------------------------------------ consensus_10739#0 CGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGTCGT 899 consensus_10739#1 ------------------------------------------------------------ consensus_10739#0 ACCGCATCTCCAGGAATTAGGATGGATGGAAACAGATTCAGAACTTCAGAATCTTTTACT 959 consensus_10739#1 ------------------------------------------------------------ consensus_10739#0 GTACGAGAAAATCCGCTGACACAAGCACATGTCAAAAAGCCACCAGGTGG 1009 consensus_10739#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||