These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 657 fasta sequence [TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC-TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG-TCGCGTATGGC-TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA-TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC-CTCATAATTATTTTGTTGAACTTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCT-GTGACAGATATCAATAC] [+] EMBL AI395489 [TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTGAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAAGTGCANGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTCCTAGAGGAC ] [-] EMBL SM769 [ GATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAANCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTTCGCGTATGGCNTTGATGGTGCCC ] [-] EMBL AW017421 [ AATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTCATGGTTC ] [-] EMBL CD139613 [ CAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA ] [-] EMBL CD139778 [ nCAAACAG AAGAATCCAAGCAAGTGTATA TTNTAATGTACAA TNTAC TTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGC ] [+] EMBL CD146146 [ GCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCAT ] [-] EMBL CD060486 [ GAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTCTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATCTTGCTCATAAAAAGTCTCACTCATAA ] [+] EMBL BG931817 [ TTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACCTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCT GTGACAGATATCAATAC] [-] EMBL CD149825 [ AAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGCTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACA ] [+] EMBL CD136582 [ TTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACACCC ] [-] EMBL CD136514 [ TTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACACCCA ] [-] EMBL CD134199 [ GCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACTTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTA CTAGTAACg ] [-] EMBL CD180822 [ CCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAA TTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACTTT ] [-] EMBL CD120551 [ CTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCG ] [-] EMBL CD140742 [ CAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAA ] consensusID : consensus_10741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 390 fasta sequence [TNNTTGTTTATTTTTTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCCCTCGGACCGAATTCTTGCCTGCG] [-] EMBL CD077962 [TNNTTGTTTATTTTTTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCCCTCGGACCGAATTCTTGCCTGCG] [-] EMBL CD139659 [ ATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA ] [-] EMBL CD139761 [ ATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCAAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA ] [-] EMBL CD130148 [ TTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAG ] [+] EMBL CD136377 [ TGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCC ] [+] EMBL CD136175 [ ATGGTGCCCCAGGTGCAGGCCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10741#0 TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAG 60 consensus_10741#1 ----------------------------------------------TNNTTGTTTATTTT 14 consensus_10741#0 AATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCAC 120 consensus_10741#1 TTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCAC 74 ********************************************************* consensus_10741#0 GACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGC 180 consensus_10741#1 GACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGC 134 ************************************************************ consensus_10741#0 TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTC 240 consensus_10741#1 TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTC 194 ************************************************************ consensus_10741#0 CCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGA 300 consensus_10741#1 CCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGA 254 ************************************************************ consensus_10741#0 TTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCAC 360 consensus_10741#1 TTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCAC 314 ************************************************************ consensus_10741#0 ACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAA 420 consensus_10741#1 ACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCC-CTCGGA 373 **************************************************** * * * consensus_10741#0 CAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATA 480 consensus_10741#1 CCGAATTCTTGCCTGCG------------------------------------------- 390 * * * * ** * * consensus_10741#0 GGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTCCTCATAATTATTTTGTTGAACTTTG 540 consensus_10741#1 ------------------------------------------------------------ consensus_10741#0 AACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCAT 600 consensus_10741#1 ------------------------------------------------------------ consensus_10741#0 CGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCTGTGACAGATATCAATAC 657 consensus_10741#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||