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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 657 fasta sequence
[TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC-TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG-TCGCGTATGGC-TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA-TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC-CTCATAATTATTTTGTTGAACTTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCT-GTGACAGATATCAATAC]
[+] EMBL AI395489 [TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTGAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAAGTGCANGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTCCTAGAGGAC ]
[-] EMBL SM769 [ GATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAANCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTTCGCGTATGGCNTTGATGGTGCCC ]
[-] EMBL AW017421 [ AATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTCATGGTTC ]
[-] EMBL CD139613 [ CAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA ]
[-] EMBL CD139778 [ nCAAACAG AAGAATCCAAGCAAGTGTATA TTNTAATGTACAA TNTAC TTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGC ]
[+] EMBL CD146146 [ GCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCAT ]
[-] EMBL CD060486 [ GAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTCTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATCTTGCTCATAAAAAGTCTCACTCATAA ]
[+] EMBL BG931817 [ TTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACCTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCT GTGACAGATATCAATAC]
[-] EMBL CD149825 [ AAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGCTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACA ]
[+] EMBL CD136582 [ TTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACACCC ]
[-] EMBL CD136514 [ TTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACACCCA ]
[-] EMBL CD134199 [ GCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACTTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTA CTAGTAACg ]
[-] EMBL CD180822 [ CCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAA TTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACTTT ]
[-] EMBL CD120551 [ CTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCG ]
[-] EMBL CD140742 [ CAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAA ]
consensusID : consensus_10741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 390 fasta sequence
[TNNTTGTTTATTTTTTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCCCTCGGACCGAATTCTTGCCTGCG]
[-] EMBL CD077962 [TNNTTGTTTATTTTTTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCCCTCGGACCGAATTCTTGCCTGCG]
[-] EMBL CD139659 [ ATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA ]
[-] EMBL CD139761 [ ATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCAAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA ]
[-] EMBL CD130148 [ TTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAG ]
[+] EMBL CD136377 [ TGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCC ]
[+] EMBL CD136175 [ ATGGTGCCCCAGGTGCAGGCCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10741#0 TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAG 60
consensus_10741#1 ----------------------------------------------TNNTTGTTTATTTT 14
consensus_10741#0 AATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCAC 120
consensus_10741#1 TTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCAC 74
*********************************************************
consensus_10741#0 GACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGC 180
consensus_10741#1 GACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGC 134
************************************************************
consensus_10741#0 TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTC 240
consensus_10741#1 TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTC 194
************************************************************
consensus_10741#0 CCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGA 300
consensus_10741#1 CCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGA 254
************************************************************
consensus_10741#0 TTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCAC 360
consensus_10741#1 TTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCAC 314
************************************************************
consensus_10741#0 ACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAA 420
consensus_10741#1 ACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCC-CTCGGA 373
**************************************************** * * *
consensus_10741#0 CAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATA 480
consensus_10741#1 CCGAATTCTTGCCTGCG------------------------------------------- 390
* * * * ** * *
consensus_10741#0 GGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTCCTCATAATTATTTTGTTGAACTTTG 540
consensus_10741#1 ------------------------------------------------------------
consensus_10741#0 AACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCAT 600
consensus_10741#1 ------------------------------------------------------------
consensus_10741#0 CGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCTGTGACAGATATCAATAC 657
consensus_10741#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||