cluster # 10741

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10741 cluster # 10741 Sequences # 21 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10741#0 length = 657 sequences # 15

consensus_10741#1 length = 390 sequences # 6

consensusID : consensus_10741#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 657
fasta sequence

                              [TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC-TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG-TCGCGTATGGC-TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA-TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC-CTCATAATTATTTTGTTGAACTTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCT-GTGACAGATATCAATAC]

[+] EMBL AI395489             [TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTGAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAAGTGCANGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA  TTTTTCCTAGAGGAC                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL SM769                [                        GATAATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAANCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTTCGCGTATGGCNTTGATGGTGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AW017421             [                           AATTTATTCCAACCACAAACCCCAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTCATGGTTC                                                                                                                                                                                                                                                        ]
[-] EMBL CD139613             [                                                 CAAACAGAAAGAATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD139778             [                                                nCAAACAG AAGAATCCAAGCAAGTGTATA TTNTAATGTACAA TNTAC TTTTGTAAGCACGACTAGCACGACGACCTCTAGC TTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGG TCGCGTATGGC TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGC                                                                                                                                                                                                                           ]
[+] EMBL CD146146             [                                                                                                                                                                                                             GCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCAT                                                                                                                                                                                                             ]
[-] EMBL CD060486             [                                                                                                                                                                                                                GAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTCTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATCTTGCTCATAAAAAGTCTCACTCATAA                                                                                                                                        ]
[+] EMBL BG931817             [                                                                                                                                                                                                                                 TTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACCTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCT GTGACAGATATCAATAC]
[-] EMBL CD149825             [                                                                                                                                                                                                                                                          AAGCACTGTA TTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGCTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACA                                                                                                                                                                                                                                             ]
[+] EMBL CD136582             [                                                                                                                                                                                                                                                                       TTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACACCC                                                                                                                                                                                                                         ]
[-] EMBL CD136514             [                                                                                                                                                                                                                                                                         TTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACACCCA                                                                                                                                                                                                                        ]
[-] EMBL CD134199             [                                                                                                                                                                                                                                                                                                                                  GCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACTTTGAACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCATCGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTA CTAGTAACg           ]
[-] EMBL CD180822             [                                                                                                                                                                                                                                                                                                                                         CCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAA TTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTC CTCATAATTATTTTGTTGAACTTT                                                                                                                       ]
[-] EMBL CD120551             [                                                                                                                                                                                                                                                                                                                                                                CTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCG                                                                                                                                                                                                       ]
[-] EMBL CD140742             [                                                                                                                                                                                                                                                                                                                                                                                                                               CAACACAAACAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATAGGGCAGGCTTGTTGATTTTGCTCATAAAA                                                                                                                                                      ]




>consensus_10741#0
TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAG
AATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCAC
GACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGC
TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTC
CCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGA
TTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCAC
ACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAA
CAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATA
GGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTCCTCATAATTATTTTGTTGAACTTTG
AACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCAT
CGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCTGTGACAGATATCAATAC

consensusID : consensus_10741#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 390
fasta sequence

                              [TNNTTGTTTATTTTTTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCCCTCGGACCGAATTCTTGCCTGCG]

[-] EMBL CD077962             [TNNTTGTTTATTTTTTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCCCTCGGACCGAATTCTTGCCTGCG]
[-] EMBL CD139659             [                               ATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA                                                                         ]
[-] EMBL CD139761             [                               ATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCAAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTA TTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCACACA                                                                         ]
[-] EMBL CD130148             [                                   TTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAG                                                                                                                                                                                                                                                                             ]
[+] EMBL CD136377             [                                                                                                                                       TGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCC                                                                                                             ]
[+] EMBL CD136175             [                                                                                                                                         ATGGTGCCCCAGGTGCAGGCCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCC                                                                                                             ]




>consensus_10741#1
TNNTTGTTTATTTTTTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTA
AGCACGACTAGCACGACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTA
GGGTCGCGTATGGCTTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCT
TCCTTTTCTCGGTCCCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAA
ACGGTCGAAAGTGATTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGT
TACTCGAAGAGCACACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGAT
GGTTCCCCTCGGACCGAATTCTTGCCTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10741#0      TTTTTTTTTTTTTTTTAAATTATCGATAATTTATTCCAACCACAAACCCCAAACAGAAAG 60
consensus_10741#1      ----------------------------------------------TNNTTGTTTATTTT 14
                                                                                   

consensus_10741#0      AATCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCAC 120
consensus_10741#1      TTNCCAAGCAAGTGTATATTTTTAATGTACAATTTTACTTTTTGTAAGCACGACTAGCAC 74
                          *********************************************************

consensus_10741#0      GACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGC 180
consensus_10741#1      GACGACCTCTAGCTTTCTCGAACTTACGACCCTTTGAGATAGTGTAGGGTCGCGTATGGC 134
                       ************************************************************

consensus_10741#0      TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTC 240
consensus_10741#1      TTGATGGTGCCCCAGGTGCAGGGCCGAAGTGTTTGACAGCAGTTCTTCCTTTTCTCGGTC 194
                       ************************************************************

consensus_10741#0      CCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGA 300
consensus_10741#1      CCTGAATAAGCACTGTATTTTTTCCTAGAGGACTGAGAATTGCCAAACGGTCGAAAGTGA 254
                       ************************************************************

consensus_10741#0      TTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCAC 360
consensus_10741#1      TTATTTCTCCACCAGCATGCAAAATCCGTTCACGGGCAGCCGTAGTTACTCGAAGAGCAC 314
                       ************************************************************

consensus_10741#0      ACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCAACACAAA 420
consensus_10741#1      ACACTTTCATTTTTGGGAACTCTCGGATTCTCGTATCATTGGTGATGGTTCCC-CTCGGA 373
                       ****************************************************  * *  *

consensus_10741#0      CAGCAATTTTATTTTCACGCCCACTTTTTTTCATTACTCGCATCAAGCGTGCCAGAGATA 480
consensus_10741#1      CCGAATTCTTGCCTGCG------------------------------------------- 390
                       * * * * **   * *                                            

consensus_10741#0      GGGCAGGCTTGTTGATTTTGCTCATAAAAAGTCTCCTCATAATTATTTTGTTGAACTTTG 540
consensus_10741#1      ------------------------------------------------------------
                                                                                   

consensus_10741#0      AACCGGTTCTACGTGCCAAAAATTTATACGCTTTAACAAGCAGACGAAGGTACACATCAT 600
consensus_10741#1      ------------------------------------------------------------
                                                                                   

consensus_10741#0      CGCTTTTTGGATTTTTCCTCTTTACCTTCCTATCGTATCTGTGACAGATATCAATAC 657
consensus_10741#1      ---------------------------------------------------------