cluster # 1075

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Schistosoma mansoni
cluster # 1075 cluster # 1075 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1075#0 length = 455 sequences # 1

consensus_1075#1 length = 452 sequences # 1

consensusID : consensus_1075#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [GCGTCTGGATAGTGATTTCTAGCTTATTTTCGGGGAAAAATTAAGACGTAATACCATCTATAGTTTATATTATTAATAGCTATAATGTAGAGCTGATGACGATTAGAATTCGCAAGAGGAAGTATTCTATGCCATCATACTGGGAAAACGAGACGGTGTGAAAGCAAAGTTACACAAAACACTTTCTCTCTGATGCCTTATCGAGAGTAGGAATTATGAGCTTATAAGAAAGATCATAAGCTATCAAACGCTAAGGAAATTGTAGAAATCTCTGGTGAACCGTTTTTGATCTTAGCGGCCTGTGTACTCGGTCACTGATGACGACAGAGCACGCATATAATGCATTGACGGAAGTACTCATGCTCAGCAGTATATAACACTGATCCCACTGTTCACAATAATGGCTAAAACTGACAACGCATGTGAAGGATGAATAGGAAGGAAATCGCTGACCG]

[+] EMBL CD187703             [GCGTCTGGATAGTGATTTCTAGCTTATTTTCGGGGAAAAATTAAGACGTAATACCATCTATAGTTTATATTATTAATAGCTATAATGTAGAGCTGATGACGATTAGAATTCGCAAGAGGAAGTATTCTATGCCATCATACTGGGAAAACGAGACGGTGTGAAAGCAAAGTTACACAAAACACTTTCTCTCTGATGCCTTATCGAGAGTAGGAATTATGAGCTTATAAGAAAGATCATAAGCTATCAAACGCTAAGGAAATTGTAGAAATCTCTGGTGAACCGTTTTTGATCTTAGCGGCCTGTGTACTCGGTCACTGATGACGACAGAGCACGCATATAATGCATTGACGGAAGTACTCATGCTCAGCAGTATATAACACTGATCCCACTGTTCACAATAATGGCTAAAACTGACAACGCATGTGAAGGATGAATAGGAAGGAAATCGCTGACCG]




>consensus_1075#0
GCGTCTGGATAGTGATTTCTAGCTTATTTTCGGGGAAAAATTAAGACGTAATACCATCTA
TAGTTTATATTATTAATAGCTATAATGTAGAGCTGATGACGATTAGAATTCGCAAGAGGA
AGTATTCTATGCCATCATACTGGGAAAACGAGACGGTGTGAAAGCAAAGTTACACAAAAC
ACTTTCTCTCTGATGCCTTATCGAGAGTAGGAATTATGAGCTTATAAGAAAGATCATAAG
CTATCAAACGCTAAGGAAATTGTAGAAATCTCTGGTGAACCGTTTTTGATCTTAGCGGCC
TGTGTACTCGGTCACTGATGACGACAGAGCACGCATATAATGCATTGACGGAAGTACTCA
TGCTCAGCAGTATATAACACTGATCCCACTGTTCACAATAATGGCTAAAACTGACAACGC
ATGTGAAGGATGAATAGGAAGGAAATCGCTGACCG

consensusID : consensus_1075#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [GCGTCTGGATAGTGATTTCTAGCTTATTTTCGGGGAAAAATTAAGACGTAATACCATCTAGAGTTTATATTATTAATAGCTCTGATGTAGAGCTGATAACGATTAGAATTCGCAAGAGGAAGTATTCTATGCCATCATACTGGGAAAACGAGACGGTTTGAAAACAAAGTTACACAAAACACTTTCTCTCTGATGCCTTATCAAGATAATGAATTATGAGCTTATAAAAAAGATCATAAGCTATAAAAAGCTAAGGAAATTGTAAAGATCTCTGGTGAACCATTTTTGATTTTAGCGGTCTGTGTACTCAGTCACTAATGAGGACAAAAAACCATTTCAAAGTCATTTCCGGAATTACTCATGTTCAGCAGTATATAACACTATTCCACTGTGAACATTAATGCTAAAACTTACAACGTATGTGAAGATGAATAATAAGGAAATCGCTGACC]

[+] EMBL CD187706             [GCGTCTGGATAGTGATTTCTAGCTTATTTTCGGGGAAAAATTAAGACGTAATACCATCTAGAGTTTATATTATTAATAGCTCTGATGTAGAGCTGATAACGATTAGAATTCGCAAGAGGAAGTATTCTATGCCATCATACTGGGAAAACGAGACGGTTTGAAAACAAAGTTACACAAAACACTTTCTCTCTGATGCCTTATCAAGATAATGAATTATGAGCTTATAAAAAAGATCATAAGCTATAAAAAGCTAAGGAAATTGTAAAGATCTCTGGTGAACCATTTTTGATTTTAGCGGTCTGTGTACTCAGTCACTAATGAGGACAAAAAACCATTTCAAAGTCATTTCCGGAATTACTCATGTTCAGCAGTATATAACACTATTCCACTGTGAACATTAATGCTAAAACTTACAACGTATGTGAAGATGAATAATAAGGAAATCGCTGACC]




>consensus_1075#1
GCGTCTGGATAGTGATTTCTAGCTTATTTTCGGGGAAAAATTAAGACGTAATACCATCTA
GAGTTTATATTATTAATAGCTCTGATGTAGAGCTGATAACGATTAGAATTCGCAAGAGGA
AGTATTCTATGCCATCATACTGGGAAAACGAGACGGTTTGAAAACAAAGTTACACAAAAC
ACTTTCTCTCTGATGCCTTATCAAGATAATGAATTATGAGCTTATAAAAAAGATCATAAG
CTATAAAAAGCTAAGGAAATTGTAAAGATCTCTGGTGAACCATTTTTGATTTTAGCGGTC
TGTGTACTCAGTCACTAATGAGGACAAAAAACCATTTCAAAGTCATTTCCGGAATTACTC
ATGTTCAGCAGTATATAACACTATTCCACTGTGAACATTAATGCTAAAACTTACAACGTA
TGTGAAGATGAATAATAAGGAAATCGCTGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1075#0      GCGTCTGGATAGTGATTTCTAGCTTATTTTCGGGGAAAAATTAAGACGTAATACCATCTA 60
consensus_1075#1      GCGTCTGGATAGTGATTTCTAGCTTATTTTCGGGGAAAAATTAAGACGTAATACCATCTA 60
                      ************************************************************

consensus_1075#0      TAGTTTATATTATTAATAGCTATAATGTAGAGCTGATGACGATTAGAATTCGCAAGAGGA 120
consensus_1075#1      GAGTTTATATTATTAATAGCTCTGATGTAGAGCTGATAACGATTAGAATTCGCAAGAGGA 120
                       ******************** * ************* **********************

consensus_1075#0      AGTATTCTATGCCATCATACTGGGAAAACGAGACGGTGTGAAAGCAAAGTTACACAAAAC 180
consensus_1075#1      AGTATTCTATGCCATCATACTGGGAAAACGAGACGGTTTGAAAACAAAGTTACACAAAAC 180
                      ************************************* ***** ****************

consensus_1075#0      ACTTTCTCTCTGATGCCTTATCGAGAGTAGGAATTATGAGCTTATAAGAAAGATCATAAG 240
consensus_1075#1      ACTTTCTCTCTGATGCCTTATCAAGATAATGAATTATGAGCTTATAAAAAAGATCATAAG 240
                      ********************** ***  * ***************** ************

consensus_1075#0      CTATCAAACGCTAAGGAAATTGTAGAAATCTCTGGTGAACCGTTTTTGATCTTAGCGGCC 300
consensus_1075#1      CTATAAAAAGCTAAGGAAATTGTAAAGATCTCTGGTGAACCATTTTTGATTTTAGCGGTC 300
                      **** *** *************** * ************** ******** ******* *

consensus_1075#0      TGTGTACTCGGTCACTGATGACGACAGAGCACGCATATAATG-CATTGACGGAAGTACTC 359
consensus_1075#1      TGTGTACTCAGTCACTAATGAGGACAAAAAACCATTTCAAAGTCATTTCCGGAATTACTC 360
                      ********* ****** **** **** *  **   *  ** * ****  ***** *****

consensus_1075#0      ATGCTCAGCAGTATATAACACTGATCCCACTGTTCACAATAATGGCTAAAACTGACAACG 419
consensus_1075#1      ATGTTCAGCAGTATATAACACT-ATTCCACTGTGAACATTAATG-CTAAAACTTACAACG 418
                      *** ****************** ** *******  *** ***** ******** ******

consensus_1075#0      CATGTGAAGGATGAATAGGAAGGAAATCGCTGACCG 455
consensus_1075#1      TATGTGAAG-ATGAATAATAAGGAAATCGCTGACC- 452
                       ******** *******  ****************